EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPREG00000003649 (Gene tree)
Gene ID: 103463390
Gene Symbol: -
Alias: -
Full Name: Aly/REF export factor
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Minus strand
Length: 1566 bases
Position: chrLG1:17253683-17255248
Accession: 103463390
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000005244	RRM_1	PF00076.22	6.3e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000005313	-	744	XM_008406709	ENSPREP00000005244	247 (aa)	XP_008404931	-

Gene Model

Click here to download ENSPREG00000003649's gene model file

Pathways

Pathway ID	Pathway Name	Source
pret03013	RNA transport	KEGG
pret03015	mRNA surveillance pathway	KEGG
pret03040	Spliceosome	KEGG
pret05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000003649's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPREG00000003649	-	100	47.794	ENSPREG00000015795	alyref	100	50.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000003649	-	100	67.188	ENSAPOG00000000183	-	100	66.406	Acanthochromis_polyacanthus
ENSPREG00000003649	-	100	57.299	ENSACIG00000020351	-	100	58.456	Amphilophus_citrinellus
ENSPREG00000003649	-	99	46.125	ENSACIG00000006351	alyref	98	47.826	Amphilophus_citrinellus
ENSPREG00000003649	-	100	46.715	ENSAOCG00000014012	alyref	100	48.364	Amphiprion_ocellaris
ENSPREG00000003649	-	100	69.444	ENSAOCG00000019305	-	100	68.651	Amphiprion_ocellaris
ENSPREG00000003649	-	100	46.715	ENSAPEG00000014603	alyref	100	48.364	Amphiprion_percula
ENSPREG00000003649	-	100	69.048	ENSAPEG00000013527	-	100	68.651	Amphiprion_percula
ENSPREG00000003649	-	74	50.246	ENSATEG00000004307	alyref	100	47.331	Anabas_testudineus
ENSPREG00000003649	-	100	65.769	ENSATEG00000000382	-	100	63.813	Anabas_testudineus
ENSPREG00000003649	-	53	51.449	ENSAPLG00000014745	-	100	53.623	Anas_platyrhynchos
ENSPREG00000003649	-	100	61.509	ENSACLG00000010184	-	100	60.755	Astatotilapia_calliptera
ENSPREG00000003649	-	100	45.421	ENSACLG00000008432	alyref	100	48.188	Astatotilapia_calliptera
ENSPREG00000003649	-	100	47.331	ENSAMXG00000007359	alyref	100	50.000	Astyanax_mexicanus
ENSPREG00000003649	-	99	39.636	ENSCING00000013568	-	99	43.295	Ciona_intestinalis
ENSPREG00000003649	-	99	40.304	ENSCSAVG00000003324	-	99	40.392	Ciona_savignyi
ENSPREG00000003649	-	100	47.407	ENSCSEG00000017800	alyref	100	49.630	Cynoglossus_semilaevis
ENSPREG00000003649	-	100	84.337	ENSCVAG00000007789	-	100	84.337	Cyprinodon_variegatus
ENSPREG00000003649	-	100	48.519	ENSCVAG00000014869	alyref	100	50.735	Cyprinodon_variegatus
ENSPREG00000003649	-	100	46.479	ENSDARG00000077732	alyref	100	48.214	Danio_rerio
ENSPREG00000003649	-	99	40.794	FBgn0010774	Ref1	66	44.385	Drosophila_melanogaster
ENSPREG00000003649	-	99	43.609	ENSEBUG00000008253	alyref	95	45.385	Eptatretus_burgeri
ENSPREG00000003649	-	100	41.797	ENSEBUG00000006305	alyref	100	42.636	Eptatretus_burgeri
ENSPREG00000003649	-	100	53.208	ENSELUG00000008849	-	100	55.849	Esox_lucius
ENSPREG00000003649	-	100	47.970	ENSELUG00000017178	alyref	100	50.362	Esox_lucius
ENSPREG00000003649	-	61	55.769	ENSFALG00000011923	-	99	55.975	Ficedula_albicollis
ENSPREG00000003649	-	100	47.212	ENSFHEG00000019426	alyref	100	50.000	Fundulus_heteroclitus
ENSPREG00000003649	-	100	89.157	ENSFHEG00000004698	-	100	89.157	Fundulus_heteroclitus
ENSPREG00000003649	-	71	57.143	ENSGMOG00000013122	-	100	57.143	Gadus_morhua
ENSPREG00000003649	-	100	47.794	ENSGMOG00000009882	alyref	100	48.339	Gadus_morhua
ENSPREG00000003649	-	100	48.339	ENSGAFG00000006014	alyref	100	50.000	Gambusia_affinis
ENSPREG00000003649	-	100	90.763	ENSGAFG00000007573	-	100	89.157	Gambusia_affinis
ENSPREG00000003649	-	100	45.421	ENSHBUG00000020196	alyref	100	48.188	Haplochromis_burtoni
ENSPREG00000003649	-	100	61.940	ENSHBUG00000001454	-	100	61.194	Haplochromis_burtoni
ENSPREG00000003649	-	98	59.684	ENSHCOG00000012825	-	94	62.451	Hippocampus_comes
ENSPREG00000003649	-	100	48.708	ENSIPUG00000009469	alyref	100	48.727	Ictalurus_punctatus
ENSPREG00000003649	-	77	50.254	ENSSTOG00000016570	-	99	49.246	Ictidomys_tridecemlineatus
ENSPREG00000003649	-	100	68.273	ENSKMAG00000006462	-	100	66.265	Kryptolebias_marmoratus
ENSPREG00000003649	-	100	47.080	ENSKMAG00000008912	alyref	100	47.985	Kryptolebias_marmoratus
ENSPREG00000003649	-	99	62.353	ENSLBEG00000012930	-	99	58.824	Labrus_bergylta
ENSPREG00000003649	-	100	48.473	ENSLBEG00000023118	alyref	90	50.579	Labrus_bergylta
ENSPREG00000003649	-	100	60.949	ENSLBEG00000005387	-	100	59.854	Labrus_bergylta
ENSPREG00000003649	-	76	49.754	ENSLOCG00000013879	alyref	84	49.065	Lepisosteus_oculatus
ENSPREG00000003649	-	100	65.234	ENSMAMG00000005464	-	100	63.281	Mastacembelus_armatus
ENSPREG00000003649	-	100	46.715	ENSMAMG00000003034	alyref	100	48.736	Mastacembelus_armatus
ENSPREG00000003649	-	100	45.421	ENSMZEG00005008639	alyref	100	48.188	Maylandia_zebra
ENSPREG00000003649	-	100	61.132	ENSMZEG00005012096	-	100	60.377	Maylandia_zebra
ENSPREG00000003649	-	100	46.125	ENSMMOG00000012458	alyref	97	47.619	Mola_mola
ENSPREG00000003649	-	99	56.522	ENSMMOG00000007032	-	98	57.312	Mola_mola
ENSPREG00000003649	-	100	66.667	ENSMALG00000006054	-	100	67.045	Monopterus_albus
ENSPREG00000003649	-	100	45.149	ENSMLUG00000004098	-	100	46.863	Myotis_lucifugus
ENSPREG00000003649	-	98	42.599	ENSMLUG00000022467	-	98	42.086	Myotis_lucifugus
ENSPREG00000003649	-	74	47.959	ENSMLUG00000009247	-	98	42.379	Myotis_lucifugus
ENSPREG00000003649	-	100	45.353	ENSMLUG00000014372	-	100	44.364	Myotis_lucifugus
ENSPREG00000003649	-	74	47.396	ENSMLUG00000028605	-	98	41.241	Myotis_lucifugus
ENSPREG00000003649	-	74	50.811	ENSMLUG00000030671	-	99	41.549	Myotis_lucifugus
ENSPREG00000003649	-	100	44.030	ENSMLUG00000006521	-	100	45.788	Myotis_lucifugus
ENSPREG00000003649	-	74	47.090	ENSMLUG00000022178	-	69	49.215	Myotis_lucifugus
ENSPREG00000003649	-	100	49.393	ENSNGAG00000022014	-	100	51.394	Nannospalax_galili
ENSPREG00000003649	-	100	61.977	ENSNBRG00000017460	-	100	61.217	Neolamprologus_brichardi
ENSPREG00000003649	-	100	45.455	ENSNBRG00000001747	alyref	100	48.201	Neolamprologus_brichardi
ENSPREG00000003649	-	100	44.604	ENSONIG00000019434	alyref	100	48.043	Oreochromis_niloticus
ENSPREG00000003649	-	100	62.069	ENSONIG00000003296	-	100	62.069	Oreochromis_niloticus
ENSPREG00000003649	-	99	57.525	ENSORLG00000001620	-	88	54.849	Oryzias_latipes
ENSPREG00000003649	-	100	47.426	ENSORLG00020011942	alyref	100	48.905	Oryzias_latipes_hni
ENSPREG00000003649	-	100	65.637	ENSORLG00020015673	-	100	65.251	Oryzias_latipes_hni
ENSPREG00000003649	-	100	47.778	ENSORLG00015022664	alyref	100	49.265	Oryzias_latipes_hsok
ENSPREG00000003649	-	100	68.199	ENSORLG00015015143	-	100	65.134	Oryzias_latipes_hsok
ENSPREG00000003649	-	99	72.177	ENSOMEG00000007158	-	97	69.076	Oryzias_melastigma
ENSPREG00000003649	-	100	48.339	ENSOMEG00000019176	alyref	100	48.897	Oryzias_melastigma
ENSPREG00000003649	-	88	47.234	ENSPPAG00000036403	-	82	51.152	Pan_paniscus
ENSPREG00000003649	-	100	47.703	ENSPKIG00000007070	alyref	100	51.838	Paramormyrops_kingsleyae
ENSPREG00000003649	-	99	50.189	ENSPKIG00000006233	-	81	51.362	Paramormyrops_kingsleyae
ENSPREG00000003649	-	67	58.721	ENSPMGG00000012994	-	93	55.814	Periophthalmus_magnuspinnatus
ENSPREG00000003649	-	99	48.708	ENSPMGG00000016600	alyref	91	48.881	Periophthalmus_magnuspinnatus
ENSPREG00000003649	-	100	50.607	ENSPEMG00000016628	-	100	50.202	Peromyscus_maniculatus_bairdii
ENSPREG00000003649	-	100	47.253	ENSPFOG00000022825	alyref	99	49.265	Poecilia_formosa
ENSPREG00000003649	-	100	94.000	ENSPFOG00000017094	-	100	94.000	Poecilia_formosa
ENSPREG00000003649	-	100	47.426	ENSPLAG00000006948	alyref	100	50.923	Poecilia_latipinna
ENSPREG00000003649	-	100	94.000	ENSPLAG00000014380	-	100	94.000	Poecilia_latipinna
ENSPREG00000003649	-	100	94.000	ENSPMEG00000023039	-	100	94.000	Poecilia_mexicana
ENSPREG00000003649	-	100	47.253	ENSPMEG00000003547	alyref	100	49.265	Poecilia_mexicana
ENSPREG00000003649	-	100	45.421	ENSPNYG00000017498	alyref	100	48.188	Pundamilia_nyererei
ENSPREG00000003649	-	99	59.459	ENSPNYG00000002879	-	98	58.846	Pundamilia_nyererei
ENSPREG00000003649	-	100	45.652	ENSPNAG00000002531	alyref	100	50.000	Pygocentrus_nattereri
ENSPREG00000003649	-	73	56.522	ENSSBOG00000030924	-	84	57.065	Saimiri_boliviensis_boliviensis
ENSPREG00000003649	-	99	44.082	ENSSHAG00000000609	-	99	43.307	Sarcophilus_harrisii
ENSPREG00000003649	-	99	40.283	ENSSHAG00000012866	-	99	41.445	Sarcophilus_harrisii
ENSPREG00000003649	-	72	49.744	ENSSFOG00015003678	alyref	83	53.846	Scleropages_formosus
ENSPREG00000003649	-	76	58.201	ENSSFOG00015003923	alyref	71	57.377	Scleropages_formosus
ENSPREG00000003649	-	100	67.045	ENSSMAG00000011169	-	100	65.152	Scophthalmus_maximus
ENSPREG00000003649	-	100	47.273	ENSSMAG00000009283	alyref	100	50.000	Scophthalmus_maximus
ENSPREG00000003649	-	100	46.715	ENSSDUG00000016158	alyref	100	48.399	Seriola_dumerili
ENSPREG00000003649	-	100	45.455	ENSSLDG00000017803	alyref	100	46.403	Seriola_lalandi_dorsalis
ENSPREG00000003649	-	99	68.110	ENSSPAG00000017028	-	96	66.535	Stegastes_partitus
ENSPREG00000003649	-	100	59.470	ENSTRUG00000003051	-	100	56.274	Takifugu_rubripes
ENSPREG00000003649	-	100	45.255	ENSTNIG00000011595	alyref	100	48.302	Tetraodon_nigroviridis
ENSPREG00000003649	-	100	62.451	ENSTNIG00000014136	-	100	59.677	Tetraodon_nigroviridis
ENSPREG00000003649	-	73	56.757	ENSVVUG00000000272	-	90	55.224	Vulpes_vulpes
ENSPREG00000003649	-	99	47.388	ENSXCOG00000018047	alyref	99	48.529	Xiphophorus_couchianus
ENSPREG00000003649	-	99	47.388	ENSXMAG00000012218	alyref	99	48.529	Xiphophorus_maculatus
ENSPREG00000003649	-	100	92.771	ENSXMAG00000018086	-	100	92.771	Xiphophorus_maculatus