EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPREG00000003662 (Gene tree)
Gene ID: 103476405
Gene Symbol: lrpprc
Alias: fc13c04|im:7150924|im:7151572|wu:fc13c04|wu:fj38h02
Full Name: leucine rich pentatricopeptide repeat containing
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Plus strand
Length: 68098 bases
Position: chrLG15:4498179-4566276
Accession: 103476405
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000005274	PPR	PF01535.20	4.2e-38	1	6
ENSPREP00000005274	PPR	PF01535.20	4.2e-38	2	6
ENSPREP00000005274	PPR	PF01535.20	4.2e-38	3	6
ENSPREP00000005274	PPR	PF01535.20	4.2e-38	4	6
ENSPREP00000005274	PPR	PF01535.20	4.2e-38	5	6
ENSPREP00000005274	PPR	PF01535.20	4.2e-38	6	6
ENSPREP00000005290	PPR	PF01535.20	4.9e-38	1	6
ENSPREP00000005290	PPR	PF01535.20	4.9e-38	2	6
ENSPREP00000005290	PPR	PF01535.20	4.9e-38	3	6
ENSPREP00000005290	PPR	PF01535.20	4.9e-38	4	6
ENSPREP00000005290	PPR	PF01535.20	4.9e-38	5	6
ENSPREP00000005290	PPR	PF01535.20	4.9e-38	6	6

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000005343	-	4230	XM_008428723	ENSPREP00000005274	1409 (aa)	XP_008426945	UPI0004A4B9BC
ENSPRET00000005359	-	4266	-	ENSPREP00000005290	1421 (aa)	-	-

Gene Model

Click here to download ENSPREG00000003662's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000003662's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000003662	lrpprc	99	73.592	ENSAPOG00000016610	lrpprc	99	73.592	Acanthochromis_polyacanthus
ENSPREG00000003662	lrpprc	94	52.213	ENSAMEG00000005852	LRPPRC	97	52.213	Ailuropoda_melanoleuca
ENSPREG00000003662	lrpprc	99	70.349	ENSACIG00000009604	lrpprc	99	70.349	Amphilophus_citrinellus
ENSPREG00000003662	lrpprc	99	74.455	ENSAOCG00000005886	lrpprc	99	74.455	Amphiprion_ocellaris
ENSPREG00000003662	lrpprc	99	70.501	ENSAPEG00000002937	lrpprc	98	70.501	Amphiprion_percula
ENSPREG00000003662	lrpprc	91	72.353	ENSATEG00000010555	lrpprc	98	70.992	Anabas_testudineus
ENSPREG00000003662	lrpprc	95	55.900	ENSACAG00000029278	LRPPRC	99	54.437	Anolis_carolinensis
ENSPREG00000003662	lrpprc	99	50.705	ENSANAG00000027440	LRPPRC	97	54.237	Aotus_nancymaae
ENSPREG00000003662	lrpprc	96	69.158	ENSACLG00000023712	lrpprc	92	77.378	Astatotilapia_calliptera
ENSPREG00000003662	lrpprc	99	50.494	ENSCJAG00000000794	LRPPRC	97	54.631	Callithrix_jacchus
ENSPREG00000003662	lrpprc	98	51.225	ENSCHIG00000020173	LRPPRC	99	50.923	Capra_hircus
ENSPREG00000003662	lrpprc	94	41.493	ENSCAPG00000013631	LRPPRC	97	41.493	Cavia_aperea
ENSPREG00000003662	lrpprc	86	49.261	ENSCPOG00000000204	LRPPRC	99	49.293	Cavia_porcellus
ENSPREG00000003662	lrpprc	99	50.316	ENSCCAG00000031900	LRPPRC	97	54.019	Cebus_capucinus
ENSPREG00000003662	lrpprc	99	49.718	ENSCATG00000014187	LRPPRC	97	54.307	Cercocebus_atys
ENSPREG00000003662	lrpprc	99	48.772	ENSCLAG00000005203	LRPPRC	99	48.794	Chinchilla_lanigera
ENSPREG00000003662	lrpprc	99	50.247	ENSCSAG00000013233	LRPPRC	99	50.496	Chlorocebus_sabaeus
ENSPREG00000003662	lrpprc	84	49.446	ENSCHOG00000003631	LRPPRC	84	49.446	Choloepus_hoffmanni
ENSPREG00000003662	lrpprc	95	49.481	ENSCANG00000034961	LRPPRC	99	55.776	Colobus_angolensis_palliatus
ENSPREG00000003662	lrpprc	99	49.505	ENSCGRG00001016261	Lrpprc	99	50.000	Cricetulus_griseus_chok1gshd
ENSPREG00000003662	lrpprc	99	49.505	ENSCGRG00000004072	Lrpprc	99	50.000	Cricetulus_griseus_crigri
ENSPREG00000003662	lrpprc	99	49.895	ENSCSEG00000003850	lrpprc	96	57.227	Cynoglossus_semilaevis
ENSPREG00000003662	lrpprc	99	81.246	ENSCVAG00000012967	lrpprc	99	81.286	Cyprinodon_variegatus
ENSPREG00000003662	lrpprc	99	57.153	ENSDARG00000043970	lrpprc	98	57.153	Danio_rerio
ENSPREG00000003662	lrpprc	78	42.441	ENSDNOG00000032336	-	95	42.441	Dasypus_novemcinctus
ENSPREG00000003662	lrpprc	99	50.954	ENSDNOG00000012594	-	99	50.961	Dasypus_novemcinctus
ENSPREG00000003662	lrpprc	99	49.789	ENSDORG00000012233	Lrpprc	99	50.106	Dipodomys_ordii
ENSPREG00000003662	lrpprc	99	50.528	ENSETEG00000006657	LRPPRC	99	50.844	Echinops_telfairi
ENSPREG00000003662	lrpprc	72	54.250	ENSEEUG00000012340	LRPPRC	79	54.250	Erinaceus_europaeus
ENSPREG00000003662	lrpprc	96	58.598	ENSELUG00000012803	lrpprc	99	58.598	Esox_lucius
ENSPREG00000003662	lrpprc	99	51.307	ENSFCAG00000013468	LRPPRC	99	51.491	Felis_catus
ENSPREG00000003662	lrpprc	94	50.263	ENSFALG00000012738	LRPPRC	98	50.263	Ficedula_albicollis
ENSPREG00000003662	lrpprc	93	50.227	ENSFDAG00000015328	LRPPRC	94	50.227	Fukomys_damarensis
ENSPREG00000003662	lrpprc	99	78.202	ENSFHEG00000019604	lrpprc	99	78.357	Fundulus_heteroclitus
ENSPREG00000003662	lrpprc	99	61.979	ENSGMOG00000008337	lrpprc	99	61.979	Gadus_morhua
ENSPREG00000003662	lrpprc	100	89.965	ENSGAFG00000001455	lrpprc	100	89.965	Gambusia_affinis
ENSPREG00000003662	lrpprc	99	68.551	ENSGACG00000010679	lrpprc	99	70.772	Gasterosteus_aculeatus
ENSPREG00000003662	lrpprc	99	75.655	ENSHBUG00000000393	lrpprc	97	75.655	Haplochromis_burtoni
ENSPREG00000003662	lrpprc	99	47.771	ENSHGLG00000006123	LRPPRC	99	47.771	Heterocephalus_glaber_female
ENSPREG00000003662	lrpprc	59	47.101	ENSHGLG00100005960	-	99	47.017	Heterocephalus_glaber_male
ENSPREG00000003662	lrpprc	98	70.014	ENSHCOG00000002107	lrpprc	100	70.014	Hippocampus_comes
ENSPREG00000003662	lrpprc	99	61.641	ENSIPUG00000009406	lrpprc	99	61.641	Ictalurus_punctatus
ENSPREG00000003662	lrpprc	99	49.683	ENSSTOG00000011185	LRPPRC	99	50.107	Ictidomys_tridecemlineatus
ENSPREG00000003662	lrpprc	99	49.718	ENSJJAG00000020475	Lrpprc	99	49.824	Jaculus_jaculus
ENSPREG00000003662	lrpprc	98	65.445	ENSKMAG00000003287	lrpprc	84	65.445	Kryptolebias_marmoratus
ENSPREG00000003662	lrpprc	99	62.105	ENSLBEG00000023225	lrpprc	96	70.428	Labrus_bergylta
ENSPREG00000003662	lrpprc	99	57.153	ENSLACG00000014030	LRPPRC	99	57.153	Latimeria_chalumnae
ENSPREG00000003662	lrpprc	99	60.502	ENSLOCG00000016390	lrpprc	97	60.502	Lepisosteus_oculatus
ENSPREG00000003662	lrpprc	99	49.267	ENSLAFG00000008614	LRPPRC	99	49.365	Loxodonta_africana
ENSPREG00000003662	lrpprc	99	49.859	ENSMFAG00000041560	LRPPRC	99	54.934	Macaca_fascicularis
ENSPREG00000003662	lrpprc	95	50.596	ENSMMUG00000019841	LRPPRC	99	54.167	Macaca_mulatta
ENSPREG00000003662	lrpprc	99	49.788	ENSMNEG00000031613	LRPPRC	97	54.120	Macaca_nemestrina
ENSPREG00000003662	lrpprc	98	63.064	ENSMAMG00000021835	lrpprc	98	63.352	Mastacembelus_armatus
ENSPREG00000003662	lrpprc	99	75.725	ENSMZEG00005027379	lrpprc	99	75.725	Maylandia_zebra
ENSPREG00000003662	lrpprc	99	49.505	ENSMAUG00000012118	Lrpprc	99	50.112	Mesocricetus_auratus
ENSPREG00000003662	lrpprc	99	50.707	ENSMICG00000010486	LRPPRC	97	54.717	Microcebus_murinus
ENSPREG00000003662	lrpprc	99	50.710	ENSMOCG00000006048	Lrpprc	99	50.710	Microtus_ochrogaster
ENSPREG00000003662	lrpprc	99	65.814	ENSMMOG00000007830	lrpprc	96	73.563	Mola_mola
ENSPREG00000003662	lrpprc	95	50.665	ENSMODG00000000648	LRPPRC	99	50.665	Monodelphis_domestica
ENSPREG00000003662	lrpprc	100	68.313	ENSMALG00000001271	lrpprc	99	68.336	Monopterus_albus
ENSPREG00000003662	lrpprc	99	50.317	ENSMPUG00000011800	LRPPRC	100	52.049	Mustela_putorius_furo
ENSPREG00000003662	lrpprc	99	50.494	ENSMLUG00000010575	LRPPRC	99	50.779	Myotis_lucifugus
ENSPREG00000003662	lrpprc	99	49.469	ENSNGAG00000013069	Lrpprc	99	49.572	Nannospalax_galili
ENSPREG00000003662	lrpprc	93	68.230	ENSNBRG00000013202	lrpprc	92	76.533	Neolamprologus_brichardi
ENSPREG00000003662	lrpprc	99	49.718	ENSNLEG00000016782	LRPPRC	96	54.749	Nomascus_leucogenys
ENSPREG00000003662	lrpprc	87	52.542	ENSOPRG00000016774	LRPPRC	89	52.542	Ochotona_princeps
ENSPREG00000003662	lrpprc	99	49.047	ENSODEG00000011211	LRPPRC	99	49.050	Octodon_degus
ENSPREG00000003662	lrpprc	99	75.301	ENSONIG00000000917	lrpprc	99	74.344	Oreochromis_niloticus
ENSPREG00000003662	lrpprc	74	46.831	ENSOANG00000014670	-	100	46.831	Ornithorhynchus_anatinus
ENSPREG00000003662	lrpprc	99	50.776	ENSOCUG00000015046	LRPPRC	95	50.923	Oryctolagus_cuniculus
ENSPREG00000003662	lrpprc	99	69.519	ENSORLG00000004605	lrpprc	96	69.470	Oryzias_latipes
ENSPREG00000003662	lrpprc	91	73.127	ENSORLG00020012536	lrpprc	99	73.147	Oryzias_latipes_hni
ENSPREG00000003662	lrpprc	99	67.516	ENSORLG00015018270	lrpprc	99	67.304	Oryzias_latipes_hsok
ENSPREG00000003662	lrpprc	99	50.246	ENSOGAG00000012798	LRPPRC	99	50.385	Otolemur_garnettii
ENSPREG00000003662	lrpprc	95	52.006	ENSOARG00000006522	LRPPRC	99	50.923	Ovis_aries
ENSPREG00000003662	lrpprc	99	48.876	ENSPPAG00000040876	LRPPRC	97	54.104	Pan_paniscus
ENSPREG00000003662	lrpprc	99	51.130	ENSPPRG00000006578	LRPPRC	99	51.138	Panthera_pardus
ENSPREG00000003662	lrpprc	95	52.494	ENSPTIG00000000933	LRPPRC	96	52.494	Panthera_tigris_altaica
ENSPREG00000003662	lrpprc	99	50.000	ENSPTRG00000011880	LRPPRC	97	54.494	Pan_troglodytes
ENSPREG00000003662	lrpprc	99	49.753	ENSPANG00000020731	LRPPRC	97	54.120	Papio_anubis
ENSPREG00000003662	lrpprc	95	49.076	ENSPKIG00000022232	lrpprc	97	58.140	Paramormyrops_kingsleyae
ENSPREG00000003662	lrpprc	61	54.282	ENSPSIG00000006830	-	98	54.282	Pelodiscus_sinensis
ENSPREG00000003662	lrpprc	66	60.684	ENSPMGG00000016597	lrpprc	96	60.684	Periophthalmus_magnuspinnatus
ENSPREG00000003662	lrpprc	93	46.340	ENSPMAG00000002147	lrpprc	99	46.388	Petromyzon_marinus
ENSPREG00000003662	lrpprc	100	96.955	ENSPFOG00000011227	lrpprc	100	96.955	Poecilia_formosa
ENSPREG00000003662	lrpprc	100	96.459	ENSPLAG00000004018	lrpprc	100	96.459	Poecilia_latipinna
ENSPREG00000003662	lrpprc	100	96.671	ENSPMEG00000016425	lrpprc	100	96.671	Poecilia_mexicana
ENSPREG00000003662	lrpprc	57	47.453	ENSPPYG00000029532	-	99	47.453	Pongo_abelii
ENSPREG00000003662	lrpprc	74	57.204	ENSPCAG00000001430	LRPPRC	80	53.731	Procavia_capensis
ENSPREG00000003662	lrpprc	95	48.975	ENSPVAG00000002007	LRPPRC	99	48.446	Pteropus_vampyrus
ENSPREG00000003662	lrpprc	99	66.902	ENSPNYG00000000756	lrpprc	90	77.021	Pundamilia_nyererei
ENSPREG00000003662	lrpprc	99	63.821	ENSPNAG00000002895	lrpprc	99	63.836	Pygocentrus_nattereri
ENSPREG00000003662	lrpprc	99	49.753	ENSRNOG00000005877	Lrpprc	99	49.929	Rattus_norvegicus
ENSPREG00000003662	lrpprc	99	48.980	ENSRBIG00000031552	LRPPRC	99	49.329	Rhinopithecus_bieti
ENSPREG00000003662	lrpprc	99	50.565	ENSSBOG00000011807	LRPPRC	97	55.009	Saimiri_boliviensis_boliviensis
ENSPREG00000003662	lrpprc	95	49.777	ENSSHAG00000018725	LRPPRC	99	49.777	Sarcophilus_harrisii
ENSPREG00000003662	lrpprc	99	55.278	ENSSFOG00015001042	lrpprc	99	55.278	Scleropages_formosus
ENSPREG00000003662	lrpprc	99	71.216	ENSSDUG00000019062	lrpprc	99	71.216	Seriola_dumerili
ENSPREG00000003662	lrpprc	99	64.828	ENSSLDG00000023028	lrpprc	99	65.862	Seriola_lalandi_dorsalis
ENSPREG00000003662	lrpprc	86	49.141	ENSSARG00000000426	LRPPRC	99	48.856	Sorex_araneus
ENSPREG00000003662	lrpprc	99	64.759	ENSSPAG00000000162	lrpprc	99	64.990	Stegastes_partitus
ENSPREG00000003662	lrpprc	99	50.459	ENSSSCG00000008452	LRPPRC	99	50.462	Sus_scrofa
ENSPREG00000003662	lrpprc	93	49.015	ENSTGUG00000003759	LRPPRC	99	49.015	Taeniopygia_guttata
ENSPREG00000003662	lrpprc	100	67.260	ENSTRUG00000008409	lrpprc	96	67.260	Takifugu_rubripes
ENSPREG00000003662	lrpprc	99	65.585	ENSTNIG00000007470	lrpprc	99	66.346	Tetraodon_nigroviridis
ENSPREG00000003662	lrpprc	99	49.119	ENSTTRG00000006403	LRPPRC	99	49.191	Tursiops_truncatus
ENSPREG00000003662	lrpprc	95	49.182	ENSVPAG00000008993	LRPPRC	99	49.182	Vicugna_pacos
ENSPREG00000003662	lrpprc	99	55.406	ENSXETG00000009296	lrpprc	99	55.336	Xenopus_tropicalis
ENSPREG00000003662	lrpprc	99	80.028	ENSXCOG00000013343	lrpprc	97	80.028	Xiphophorus_couchianus
ENSPREG00000003662	lrpprc	100	89.399	ENSXMAG00000018108	lrpprc	100	89.399	Xiphophorus_maculatus