EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPREG00000003764 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: rbm4l|wu:fc25a01
Full Name: RNA-binding protein 4.1-like
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Minus strand
Length: 1452 bases
Position: chrLG18:3972699-3974150
Accession: 103480200
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000005480	zf-CCHC	PF00098.23	5.9e-05	1	1
ENSPREP00000005456	zf-CCHC	PF00098.23	6.9e-05	1	1
ENSPREP00000005480	RRM_5	PF13893.6	4.6e-06	1	1
ENSPREP00000005480	RRM_1	PF00076.22	4.6e-31	1	2
ENSPREP00000005480	RRM_1	PF00076.22	4.6e-31	2	2
ENSPREP00000005456	RRM_1	PF00076.22	6.3e-31	1	2
ENSPREP00000005456	RRM_1	PF00076.22	6.3e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000005554	-	1017	-	ENSPREP00000005480	338 (aa)	-	-
ENSPRET00000005531	-	1148	XM_008435076	ENSPREP00000005456	376 (aa)	XP_008433298	-

Gene Model

Click here to download ENSPREG00000003764's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000003764's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPREG00000003764	-	74	38.931	ENSPREG00000002093	-	97	37.176
ENSPREG00000003764	-	99	44.262	ENSPREG00000003724	rbm4.1	99	45.192
ENSPREG00000003764	-	51	31.169	ENSPREG00000020685	srsf7a	86	31.169

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000003764	-	92	61.881	ENSAPOG00000012353	rbm4.1	99	44.365	Acanthochromis_polyacanthus
ENSPREG00000003764	-	87	65.761	ENSACIG00000016482	rbm4.1	99	45.913	Amphilophus_citrinellus
ENSPREG00000003764	-	92	61.881	ENSAOCG00000010915	rbm4.1	99	44.365	Amphiprion_ocellaris
ENSPREG00000003764	-	92	61.881	ENSAPEG00000009494	rbm4.1	99	44.365	Amphiprion_percula
ENSPREG00000003764	-	88	64.706	ENSATEG00000001904	rbm4.1	99	45.735	Anabas_testudineus
ENSPREG00000003764	-	100	62.016	ENSACLG00000007740	-	100	62.532	Astatotilapia_calliptera
ENSPREG00000003764	-	87	65.761	ENSACLG00000007722	rbm4.1	99	45.913	Astatotilapia_calliptera
ENSPREG00000003764	-	52	55.714	ENSAMXG00000032121	rbm4.2	88	55.714	Astyanax_mexicanus
ENSPREG00000003764	-	99	48.042	ENSAMXG00000036611	rbm4.1	99	48.825	Astyanax_mexicanus
ENSPREG00000003764	-	59	49.275	ENSCPBG00000023666	-	92	49.275	Chrysemys_picta_bellii
ENSPREG00000003764	-	95	63.731	ENSCSEG00000014365	rbm4.1	99	43.705	Cynoglossus_semilaevis
ENSPREG00000003764	-	100	58.015	ENSCSEG00000014359	-	100	58.015	Cynoglossus_semilaevis
ENSPREG00000003764	-	57	67.626	ENSCSEG00000007739	-	99	67.626	Cynoglossus_semilaevis
ENSPREG00000003764	-	84	69.714	ENSCVAG00000019349	rbm4.1	99	44.337	Cyprinodon_variegatus
ENSPREG00000003764	-	99	67.742	ENSDARG00000036386	rbm4.1	99	67.742	Danio_rerio
ENSPREG00000003764	-	99	44.417	ENSDARG00000055080	rbm4.2	99	47.013	Danio_rerio
ENSPREG00000003764	-	99	40.701	ENSEBUG00000008142	-	95	40.568	Eptatretus_burgeri
ENSPREG00000003764	-	51	55.618	ENSEBUG00000007174	-	97	52.874	Eptatretus_burgeri
ENSPREG00000003764	-	88	68.649	ENSELUG00000013205	rbm4.1	99	45.823	Esox_lucius
ENSPREG00000003764	-	99	44.522	ENSFHEG00000022926	rbm4.1	99	44.681	Fundulus_heteroclitus
ENSPREG00000003764	-	99	40.092	ENSGMOG00000007464	rbm4.1	99	42.721	Gadus_morhua
ENSPREG00000003764	-	100	55.076	ENSGMOG00000007455	-	100	55.808	Gadus_morhua
ENSPREG00000003764	-	99	44.028	ENSGAFG00000019302	rbm4.1	99	44.952	Gambusia_affinis
ENSPREG00000003764	-	95	60.287	ENSGACG00000000822	rbm4.1	96	63.636	Gasterosteus_aculeatus
ENSPREG00000003764	-	100	58.140	ENSGACG00000000821	-	100	58.140	Gasterosteus_aculeatus
ENSPREG00000003764	-	59	48.571	ENSGAGG00000014558	-	92	49.275	Gopherus_agassizii
ENSPREG00000003764	-	87	65.761	ENSHBUG00000011610	rbm4.1	99	45.913	Haplochromis_burtoni
ENSPREG00000003764	-	95	43.970	ENSHCOG00000011403	rbm4.1	99	61.321	Hippocampus_comes
ENSPREG00000003764	-	93	47.397	ENSIPUG00000022937	rbm4.2	97	48.429	Ictalurus_punctatus
ENSPREG00000003764	-	96	67.742	ENSIPUG00000022931	rbm4.1	99	63.547	Ictalurus_punctatus
ENSPREG00000003764	-	100	57.895	ENSKMAG00000006528	-	100	58.396	Kryptolebias_marmoratus
ENSPREG00000003764	-	95	46.667	ENSKMAG00000006556	rbm4.1	95	46.348	Kryptolebias_marmoratus
ENSPREG00000003764	-	96	65.241	ENSLBEG00000019782	rbm4.1	99	44.762	Labrus_bergylta
ENSPREG00000003764	-	100	62.016	ENSLBEG00000019756	-	100	63.566	Labrus_bergylta
ENSPREG00000003764	-	88	64.706	ENSMAMG00000001765	rbm4.1	74	61.386	Mastacembelus_armatus
ENSPREG00000003764	-	100	62.755	ENSMAMG00000001760	-	100	63.776	Mastacembelus_armatus
ENSPREG00000003764	-	87	65.761	ENSMZEG00005009205	rbm4.1	99	45.913	Maylandia_zebra
ENSPREG00000003764	-	92	65.775	ENSMMOG00000020479	rbm4.1	99	44.976	Mola_mola
ENSPREG00000003764	-	100	65.810	ENSMALG00000020557	-	100	65.810	Monopterus_albus
ENSPREG00000003764	-	99	44.828	ENSMALG00000020544	rbm4.1	99	45.131	Monopterus_albus
ENSPREG00000003764	-	87	65.761	ENSNBRG00000017755	rbm4.1	99	45.913	Neolamprologus_brichardi
ENSPREG00000003764	-	87	65.761	ENSONIG00000015730	rbm4.1	99	45.913	Oreochromis_niloticus
ENSPREG00000003764	-	99	43.287	ENSORLG00000012496	rbm4.1	99	67.778	Oryzias_latipes
ENSPREG00000003764	-	99	43.287	ENSORLG00020012454	rbm4.1	99	67.778	Oryzias_latipes_hni
ENSPREG00000003764	-	99	43.287	ENSORLG00015013678	rbm4.1	99	67.778	Oryzias_latipes_hsok
ENSPREG00000003764	-	99	43.972	ENSOMEG00000001001	rbm4.1	99	68.333	Oryzias_melastigma
ENSPREG00000003764	-	93	65.263	ENSPKIG00000020805	rbm4.1	99	62.069	Paramormyrops_kingsleyae
ENSPREG00000003764	-	51	53.448	ENSPMAG00000003433	rbm4.2	82	53.448	Petromyzon_marinus
ENSPREG00000003764	-	99	45.215	ENSPFOG00000012675	rbm4.1	99	45.324	Poecilia_formosa
ENSPREG00000003764	-	100	92.876	ENSPFOG00000012685	-	100	92.876	Poecilia_formosa
ENSPREG00000003764	-	99	44.262	ENSPLAG00000018572	rbm4.1	99	45.192	Poecilia_latipinna
ENSPREG00000003764	-	60	97.826	ENSPLAG00000018569	-	88	97.826	Poecilia_latipinna
ENSPREG00000003764	-	99	44.262	ENSPMEG00000006290	rbm4.1	99	45.192	Poecilia_mexicana
ENSPREG00000003764	-	60	97.826	ENSPMEG00000006278	-	88	97.826	Poecilia_mexicana
ENSPREG00000003764	-	87	65.761	ENSPNYG00000004662	rbm4.1	99	45.913	Pundamilia_nyererei
ENSPREG00000003764	-	87	67.742	ENSPNAG00000002539	rbm4.1	99	46.472	Pygocentrus_nattereri
ENSPREG00000003764	-	95	48.919	ENSPNAG00000013057	rbm4.2	95	50.000	Pygocentrus_nattereri
ENSPREG00000003764	-	93	65.789	ENSSFOG00015021996	sf1	99	62.562	Scleropages_formosus
ENSPREG00000003764	-	99	66.845	ENSSMAG00000007571	rbm4.1	99	45.476	Scophthalmus_maximus
ENSPREG00000003764	-	100	63.520	ENSSDUG00000003936	-	100	64.031	Seriola_dumerili
ENSPREG00000003764	-	88	64.171	ENSSDUG00000003925	rbm4.1	99	45.346	Seriola_dumerili
ENSPREG00000003764	-	88	64.171	ENSSLDG00000013147	rbm4.1	99	45.346	Seriola_lalandi_dorsalis
ENSPREG00000003764	-	100	61.990	ENSSLDG00000013157	-	100	63.010	Seriola_lalandi_dorsalis
ENSPREG00000003764	-	100	64.267	ENSSPAG00000019046	-	100	64.267	Stegastes_partitus
ENSPREG00000003764	-	88	64.171	ENSSPAG00000019053	rbm4.1	99	45.476	Stegastes_partitus
ENSPREG00000003764	-	91	61.881	ENSTRUG00000013334	rbm4.1	98	43.276	Takifugu_rubripes
ENSPREG00000003764	-	100	59.487	ENSTRUG00000013328	-	100	59.536	Takifugu_rubripes
ENSPREG00000003764	-	100	57.772	ENSTNIG00000000316	-	100	58.247	Tetraodon_nigroviridis
ENSPREG00000003764	-	94	49.096	ENSTNIG00000004821	rbm4.1	94	50.769	Tetraodon_nigroviridis
ENSPREG00000003764	-	75	48.872	ENSXETG00000026649	rbm4b	93	43.082	Xenopus_tropicalis
ENSPREG00000003764	-	99	44.262	ENSXCOG00000003731	rbm4.1	99	45.192	Xiphophorus_couchianus
ENSPREG00000003764	-	100	91.534	ENSXMAG00000008059	-	100	91.534	Xiphophorus_maculatus
ENSPREG00000003764	-	99	44.262	ENSXMAG00000008069	rbm4.1	99	45.192	Xiphophorus_maculatus