EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPREG00000003874 (Gene tree)
Gene ID: 103472277
Gene Symbol: patl1
Alias: fa11d04|wu:fa11d04|zgc:158239
Full Name: PAT1 homolog 1%2C processing body mRNA decay factor
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Plus strand
Length: 12284 bases
Position: chrLG1:33316549-33328832
Accession: 103472277
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000005572	PAT1	PF09770.9	4.8e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000005646	-	3038	XM_008421786	ENSPREP00000005572	734 (aa)	XP_008420008	-

Gene Model

Click here to download ENSPREG00000003874's gene model file

Pathways

Pathway ID	Pathway Name	Source
pret03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000003874's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000003874	patl1	70	49.652	ENSG00000166889	PATL1	74	47.295	Homo_sapiens
ENSPREG00000003874	patl1	95	77.874	ENSAPOG00000021290	patl1	88	79.053	Acanthochromis_polyacanthus
ENSPREG00000003874	patl1	70	50.174	ENSAMEG00000014215	PATL1	74	47.213	Ailuropoda_melanoleuca
ENSPREG00000003874	patl1	95	77.221	ENSACIG00000005182	patl1	88	78.797	Amphilophus_citrinellus
ENSPREG00000003874	patl1	90	78.676	ENSAOCG00000021993	patl1	84	78.994	Amphiprion_ocellaris
ENSPREG00000003874	patl1	95	80.485	ENSAPEG00000021391	patl1	90	81.989	Amphiprion_percula
ENSPREG00000003874	patl1	95	76.965	ENSATEG00000002230	patl1	89	78.862	Anabas_testudineus
ENSPREG00000003874	patl1	58	47.872	ENSAPLG00000013394	PATL1	94	46.882	Anas_platyrhynchos
ENSPREG00000003874	patl1	55	33.945	ENSAPLG00000003980	PATL2	50	37.658	Anas_platyrhynchos
ENSPREG00000003874	patl1	70	49.476	ENSACAG00000006607	PATL1	73	47.059	Anolis_carolinensis
ENSPREG00000003874	patl1	70	49.738	ENSANAG00000023078	PATL1	74	42.513	Aotus_nancymaae
ENSPREG00000003874	patl1	95	80.242	ENSACLG00000005144	patl1	90	80.780	Astatotilapia_calliptera
ENSPREG00000003874	patl1	70	50.174	ENSBTAG00000005913	PATL1	74	47.561	Bos_taurus
ENSPREG00000003874	patl1	70	49.738	ENSCJAG00000016192	PATL1	74	49.722	Callithrix_jacchus
ENSPREG00000003874	patl1	70	50.348	ENSCAFG00000007581	PATL1	74	47.213	Canis_familiaris
ENSPREG00000003874	patl1	88	49.551	ENSCAFG00020001648	PATL1	88	47.920	Canis_lupus_dingo
ENSPREG00000003874	patl1	88	47.788	ENSCHIG00000025913	PATL1	89	46.737	Capra_hircus
ENSPREG00000003874	patl1	95	45.910	ENSTSYG00000012748	PATL1	85	48.282	Carlito_syrichta
ENSPREG00000003874	patl1	70	49.310	ENSCAPG00000013668	PATL1	73	48.276	Cavia_aperea
ENSPREG00000003874	patl1	70	47.826	ENSCPOG00000006827	PATL1	63	52.786	Cavia_porcellus
ENSPREG00000003874	patl1	70	49.738	ENSCCAG00000023759	PATL1	74	47.469	Cebus_capucinus
ENSPREG00000003874	patl1	70	49.738	ENSCATG00000009629	PATL1	74	47.469	Cercocebus_atys
ENSPREG00000003874	patl1	68	50.181	ENSCLAG00000003427	PATL1	71	48.195	Chinchilla_lanigera
ENSPREG00000003874	patl1	70	49.738	ENSCSAG00000006095	PATL1	81	47.469	Chlorocebus_sabaeus
ENSPREG00000003874	patl1	56	58.000	ENSCHOG00000001611	PATL1	70	58.000	Choloepus_hoffmanni
ENSPREG00000003874	patl1	70	49.738	ENSCANG00000039197	PATL1	78	48.148	Colobus_angolensis_palliatus
ENSPREG00000003874	patl1	70	50.263	ENSCGRG00001024927	Patl1	73	48.336	Cricetulus_griseus_chok1gshd
ENSPREG00000003874	patl1	70	50.263	ENSCGRG00000000461	Patl1	74	48.336	Cricetulus_griseus_crigri
ENSPREG00000003874	patl1	95	74.834	ENSCSEG00000008261	patl1	90	78.209	Cynoglossus_semilaevis
ENSPREG00000003874	patl1	85	90.763	ENSCVAG00000006664	patl1	89	90.763	Cyprinodon_variegatus
ENSPREG00000003874	patl1	95	68.932	ENSDARG00000017423	patl1	90	68.715	Danio_rerio
ENSPREG00000003874	patl1	87	44.077	ENSDNOG00000038865	PATL1	84	44.924	Dasypus_novemcinctus
ENSPREG00000003874	patl1	70	49.477	ENSDORG00000000237	Patl1	74	47.120	Dipodomys_ordii
ENSPREG00000003874	patl1	88	49.278	ENSEASG00005007963	PATL1	88	47.568	Equus_asinus_asinus
ENSPREG00000003874	patl1	70	50.174	ENSECAG00000011411	PATL1	79	47.841	Equus_caballus
ENSPREG00000003874	patl1	95	69.835	ENSELUG00000024249	patl1	89	68.952	Esox_lucius
ENSPREG00000003874	patl1	70	50.262	ENSFCAG00000015573	PATL1	74	49.040	Felis_catus
ENSPREG00000003874	patl1	70	50.342	ENSFALG00000012150	PATL1	88	49.132	Ficedula_albicollis
ENSPREG00000003874	patl1	70	50.174	ENSFDAG00000016128	PATL1	74	48.955	Fukomys_damarensis
ENSPREG00000003874	patl1	95	86.602	ENSFHEG00000017790	patl1	90	86.602	Fundulus_heteroclitus
ENSPREG00000003874	patl1	86	48.542	ENSGALG00000042641	PATL1	89	48.174	Gallus_gallus
ENSPREG00000003874	patl1	95	93.427	ENSGAFG00000006508	patl1	89	93.706	Gambusia_affinis
ENSPREG00000003874	patl1	95	70.315	ENSGACG00000016448	patl1	88	71.096	Gasterosteus_aculeatus
ENSPREG00000003874	patl1	95	44.041	ENSGAGG00000004461	PATL1	89	43.603	Gopherus_agassizii
ENSPREG00000003874	patl1	88	48.490	ENSGGOG00000004335	PATL1	89	46.619	Gorilla_gorilla
ENSPREG00000003874	patl1	95	80.376	ENSHBUG00000005365	patl1	90	80.914	Haplochromis_burtoni
ENSPREG00000003874	patl1	70	49.389	ENSHGLG00000018173	PATL1	74	47.644	Heterocephalus_glaber_female
ENSPREG00000003874	patl1	70	49.389	ENSHGLG00100003453	PATL1	75	47.644	Heterocephalus_glaber_male
ENSPREG00000003874	patl1	95	73.423	ENSHCOG00000001898	patl1	90	74.198	Hippocampus_comes
ENSPREG00000003874	patl1	70	50.436	ENSSTOG00000013764	PATL1	74	48.517	Ictidomys_tridecemlineatus
ENSPREG00000003874	patl1	95	81.941	ENSKMAG00000020848	patl1	90	82.027	Kryptolebias_marmoratus
ENSPREG00000003874	patl1	95	77.261	ENSLBEG00000023617	patl1	90	79.759	Labrus_bergylta
ENSPREG00000003874	patl1	73	68.750	ENSLACG00000004640	PATL1	78	68.750	Latimeria_chalumnae
ENSPREG00000003874	patl1	95	58.288	ENSLOCG00000000717	patl1	89	59.563	Lepisosteus_oculatus
ENSPREG00000003874	patl1	70	50.436	ENSLAFG00000015161	PATL1	74	47.644	Loxodonta_africana
ENSPREG00000003874	patl1	70	49.826	ENSMFAG00000040851	PATL1	74	47.469	Macaca_fascicularis
ENSPREG00000003874	patl1	70	49.738	ENSMMUG00000017287	PATL1	74	47.469	Macaca_mulatta
ENSPREG00000003874	patl1	70	49.738	ENSMNEG00000038692	PATL1	74	47.469	Macaca_nemestrina
ENSPREG00000003874	patl1	70	49.913	ENSMLEG00000030044	PATL1	74	47.644	Mandrillus_leucophaeus
ENSPREG00000003874	patl1	95	76.542	ENSMAMG00000003950	patl1	90	78.016	Mastacembelus_armatus
ENSPREG00000003874	patl1	95	80.108	ENSMZEG00005013404	patl1	90	80.780	Maylandia_zebra
ENSPREG00000003874	patl1	93	44.856	ENSMGAG00000003406	PATL1	92	43.544	Meleagris_gallopavo
ENSPREG00000003874	patl1	70	42.832	ENSMAUG00000012059	Patl1	73	41.860	Mesocricetus_auratus
ENSPREG00000003874	patl1	65	51.248	ENSMICG00000004172	PATL1	80	48.752	Microcebus_murinus
ENSPREG00000003874	patl1	70	50.263	ENSMOCG00000010087	Patl1	73	48.336	Microtus_ochrogaster
ENSPREG00000003874	patl1	74	94.828	ENSMMOG00000013711	patl1	88	79.074	Mola_mola
ENSPREG00000003874	patl1	70	50.607	ENSMODG00000020201	PATL1	74	48.354	Monodelphis_domestica
ENSPREG00000003874	patl1	89	69.910	ENSMALG00000018706	patl1	87	73.054	Monopterus_albus
ENSPREG00000003874	patl1	70	49.913	MGP_CAROLIEiJ_G0022739	Patl1	74	48.866	Mus_caroli
ENSPREG00000003874	patl1	70	49.913	ENSMUSG00000046139	Patl1	74	48.866	Mus_musculus
ENSPREG00000003874	patl1	70	50.000	MGP_PahariEiJ_G0014233	Patl1	74	48.866	Mus_pahari
ENSPREG00000003874	patl1	70	49.913	MGP_SPRETEiJ_G0023652	Patl1	74	48.866	Mus_spretus
ENSPREG00000003874	patl1	70	50.523	ENSMPUG00000014607	PATL1	74	47.387	Mustela_putorius_furo
ENSPREG00000003874	patl1	88	50.717	ENSMLUG00000011169	PATL1	73	48.825	Myotis_lucifugus
ENSPREG00000003874	patl1	70	49.043	ENSNGAG00000003682	Patl1	73	48.606	Nannospalax_galili
ENSPREG00000003874	patl1	76	68.493	ENSNBRG00000015372	patl1	96	54.993	Neolamprologus_brichardi
ENSPREG00000003874	patl1	88	48.490	ENSNLEG00000013081	PATL1	89	46.619	Nomascus_leucogenys
ENSPREG00000003874	patl1	53	57.051	ENSMEUG00000009391	PATL1	61	57.051	Notamacropus_eugenii
ENSPREG00000003874	patl1	55	56.014	ENSOPRG00000007963	PATL1	63	55.670	Ochotona_princeps
ENSPREG00000003874	patl1	84	84.800	ENSONIG00000004170	patl1	90	80.888	Oreochromis_niloticus
ENSPREG00000003874	patl1	70	50.087	ENSOCUG00000002156	PATL1	74	48.342	Oryctolagus_cuniculus
ENSPREG00000003874	patl1	71	82.700	ENSORLG00015022240	patl1	89	70.694	Oryzias_latipes_hsok
ENSPREG00000003874	patl1	70	49.738	ENSOGAG00000004351	PATL1	74	47.469	Otolemur_garnettii
ENSPREG00000003874	patl1	70	49.826	ENSOARG00000012005	PATL1	71	48.258	Ovis_aries
ENSPREG00000003874	patl1	88	48.490	ENSPPAG00000034275	PATL1	89	46.619	Pan_paniscus
ENSPREG00000003874	patl1	70	50.262	ENSPPRG00000020639	PATL1	74	49.040	Panthera_pardus
ENSPREG00000003874	patl1	70	50.262	ENSPTIG00000019298	PATL1	74	49.040	Panthera_tigris_altaica
ENSPREG00000003874	patl1	88	45.423	ENSPTRG00000003697	PATL1	88	42.384	Pan_troglodytes
ENSPREG00000003874	patl1	70	49.738	ENSPANG00000035620	PATL1	74	47.469	Papio_anubis
ENSPREG00000003874	patl1	95	71.489	ENSPKIG00000016224	patl1	89	71.409	Paramormyrops_kingsleyae
ENSPREG00000003874	patl1	70	50.871	ENSPSIG00000016206	PATL1	71	48.780	Pelodiscus_sinensis
ENSPREG00000003874	patl1	95	76.828	ENSPMGG00000002644	patl1	89	76.966	Periophthalmus_magnuspinnatus
ENSPREG00000003874	patl1	70	50.175	ENSPEMG00000014215	Patl1	74	48.601	Peromyscus_maniculatus_bairdii
ENSPREG00000003874	patl1	95	44.935	ENSPCIG00000010852	PATL1	89	44.532	Phascolarctos_cinereus
ENSPREG00000003874	patl1	95	95.927	ENSPFOG00000007768	patl1	98	95.927	Poecilia_formosa
ENSPREG00000003874	patl1	95	95.787	ENSPLAG00000018465	patl1	89	95.927	Poecilia_latipinna
ENSPREG00000003874	patl1	95	96.197	ENSPMEG00000006555	patl1	89	96.197	Poecilia_mexicana
ENSPREG00000003874	patl1	70	49.913	ENSPPYG00000003230	PATL1	74	47.644	Pongo_abelii
ENSPREG00000003874	patl1	88	48.746	ENSPCOG00000020770	PATL1	88	48.094	Propithecus_coquereli
ENSPREG00000003874	patl1	68	49.084	ENSPVAG00000015239	PATL1	82	47.070	Pteropus_vampyrus
ENSPREG00000003874	patl1	82	87.764	ENSPNYG00000018936	patl1	88	87.083	Pundamilia_nyererei
ENSPREG00000003874	patl1	95	71.250	ENSPNAG00000017907	patl1	89	72.423	Pygocentrus_nattereri
ENSPREG00000003874	patl1	70	50.174	ENSRNOG00000021052	Patl1	74	48.258	Rattus_norvegicus
ENSPREG00000003874	patl1	70	42.339	ENSRBIG00000032263	PATL1	74	41.351	Rhinopithecus_bieti
ENSPREG00000003874	patl1	70	49.738	ENSRROG00000032861	PATL1	74	47.469	Rhinopithecus_roxellana
ENSPREG00000003874	patl1	88	48.135	ENSSBOG00000025195	PATL1	89	46.607	Saimiri_boliviensis_boliviensis
ENSPREG00000003874	patl1	95	44.819	ENSSHAG00000004309	PATL1	89	44.125	Sarcophilus_harrisii
ENSPREG00000003874	patl1	95	70.547	ENSSFOG00015009614	patl1	89	71.529	Scleropages_formosus
ENSPREG00000003874	patl1	95	76.037	ENSSMAG00000009482	patl1	90	78.313	Scophthalmus_maximus
ENSPREG00000003874	patl1	95	76.750	ENSSDUG00000005362	patl1	90	78.996	Seriola_dumerili
ENSPREG00000003874	patl1	95	76.720	ENSSLDG00000019146	patl1	90	78.968	Seriola_lalandi_dorsalis
ENSPREG00000003874	patl1	88	50.619	ENSSPUG00000009453	PATL1	89	49.644	Sphenodon_punctatus
ENSPREG00000003874	patl1	95	77.228	ENSSPAG00000003187	patl1	88	77.496	Stegastes_partitus
ENSPREG00000003874	patl1	70	50.087	ENSSSCG00000013124	PATL1	81	48.195	Sus_scrofa
ENSPREG00000003874	patl1	95	45.052	ENSTGUG00000006222	PATL1	74	49.393	Taeniopygia_guttata
ENSPREG00000003874	patl1	95	69.318	ENSTRUG00000000709	patl1	89	69.220	Takifugu_rubripes
ENSPREG00000003874	patl1	54	49.593	ENSTBEG00000000796	PATL1	57	49.593	Tupaia_belangeri
ENSPREG00000003874	patl1	59	55.172	ENSTTRG00000009389	PATL1	67	55.128	Tursiops_truncatus
ENSPREG00000003874	patl1	84	48.872	ENSUMAG00000018634	PATL1	88	46.293	Ursus_maritimus
ENSPREG00000003874	patl1	88	49.642	ENSVVUG00000016668	PATL1	88	47.920	Vulpes_vulpes
ENSPREG00000003874	patl1	66	91.943	ENSXCOG00000010808	patl1	84	91.943	Xiphophorus_couchianus
ENSPREG00000003874	patl1	95	93.147	ENSXMAG00000013834	patl1	89	93.846	Xiphophorus_maculatus