EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPREG00000004100 (Gene tree)
Gene ID: 103458114
Gene Symbol: dkc1
Alias: fc87a02|fi24a05|fv62a07|wu:fa28f10|wu:fc87a02|wu:fi24a05|wu:fv62a07|zgc:110395
Full Name: dyskerin pseudouridine synthase 1
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Plus strand
Length: 10084 bases
Position: chrLG22:2786227-2796310
Accession: 103458114
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000006003	TruB_N	PF01509.18	7.7e-22	1	1
ENSPREP00000005982	TruB_N	PF01509.18	7.4e-20	1	1
ENSPREP00000006003	PUA	PF01472.20	5.9e-17	1	1
ENSPREP00000005982	PUA	PF01472.20	6.5e-17	1	1
ENSPREP00000006003	DKCLD	PF08068.12	4.5e-31	1	1
ENSPREP00000005982	DKCLD	PF08068.12	5.2e-31	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000006085	-	1536	-	ENSPREP00000006003	511 (aa)	-	-
ENSPRET00000006063	-	4324	XM_008398696	ENSPREP00000005982	553 (aa)	XP_008396918	-

Gene Model

Click here to download ENSPREG00000004100's gene model file

Pathways

Pathway ID	Pathway Name	Source
pret03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000004100's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000004100	dkc1	78	86.398	ENSG00000130826	DKC1	99	88.350	Homo_sapiens
ENSPREG00000004100	dkc1	92	88.136	ENSAPOG00000007799	dkc1	89	89.602	Acanthochromis_polyacanthus
ENSPREG00000004100	dkc1	84	81.693	ENSAMEG00000002776	DKC1	86	81.693	Ailuropoda_melanoleuca
ENSPREG00000004100	dkc1	96	86.531	ENSACIG00000022614	dkc1	94	87.872	Amphilophus_citrinellus
ENSPREG00000004100	dkc1	96	86.613	ENSAOCG00000013159	dkc1	88	90.826	Amphiprion_ocellaris
ENSPREG00000004100	dkc1	91	89.172	ENSAPEG00000002284	dkc1	88	90.741	Amphiprion_percula
ENSPREG00000004100	dkc1	86	87.892	ENSATEG00000013682	dkc1	86	88.063	Anabas_testudineus
ENSPREG00000004100	dkc1	84	82.313	ENSACAG00000015600	DKC1	85	77.189	Anolis_carolinensis
ENSPREG00000004100	dkc1	84	80.499	ENSANAG00000022732	DKC1	86	81.179	Aotus_nancymaae
ENSPREG00000004100	dkc1	92	87.131	ENSACLG00000015605	dkc1	88	89.498	Astatotilapia_calliptera
ENSPREG00000004100	dkc1	85	86.957	ENSAMXG00000017108	dkc1	85	87.500	Astyanax_mexicanus
ENSPREG00000004100	dkc1	84	81.279	ENSBTAG00000013045	DKC1	88	80.405	Bos_taurus
ENSPREG00000004100	dkc1	79	65.012	WBGene00010478	K01G5.5	97	61.201	Caenorhabditis_elegans
ENSPREG00000004100	dkc1	84	80.455	ENSCJAG00000004210	DKC1	85	81.136	Callithrix_jacchus
ENSPREG00000004100	dkc1	87	78.146	ENSCAFG00000019620	-	80	83.981	Canis_familiaris
ENSPREG00000004100	dkc1	87	71.461	ENSCAFG00000009311	-	95	67.835	Canis_familiaris
ENSPREG00000004100	dkc1	78	75.940	ENSCAFG00020009379	-	91	67.152	Canis_lupus_dingo
ENSPREG00000004100	dkc1	87	78.146	ENSCAFG00020008918	-	80	83.981	Canis_lupus_dingo
ENSPREG00000004100	dkc1	84	81.279	ENSCHIG00000017392	DKC1	88	80.405	Capra_hircus
ENSPREG00000004100	dkc1	84	78.714	ENSTSYG00000007681	DKC1	86	78.936	Carlito_syrichta
ENSPREG00000004100	dkc1	72	87.978	ENSCAPG00000003342	DKC1	91	82.836	Cavia_aperea
ENSPREG00000004100	dkc1	83	81.465	ENSCPOG00000008825	DKC1	85	81.922	Cavia_porcellus
ENSPREG00000004100	dkc1	84	70.748	ENSCCAG00000027418	DKC1	84	71.429	Cebus_capucinus
ENSPREG00000004100	dkc1	84	80.272	ENSCATG00000033602	DKC1	86	80.499	Cercocebus_atys
ENSPREG00000004100	dkc1	83	81.881	ENSCLAG00000000720	DKC1	86	81.881	Chinchilla_lanigera
ENSPREG00000004100	dkc1	84	80.045	ENSCSAG00000006706	DKC1	86	80.726	Chlorocebus_sabaeus
ENSPREG00000004100	dkc1	77	86.514	ENSCPBG00000005858	DKC1	86	84.975	Chrysemys_picta_bellii
ENSPREG00000004100	dkc1	79	78.870	ENSCING00000004599	-	83	75.688	Ciona_intestinalis
ENSPREG00000004100	dkc1	81	77.240	ENSCSAVG00000010047	-	89	79.345	Ciona_savignyi
ENSPREG00000004100	dkc1	84	80.045	ENSCANG00000027987	DKC1	86	80.726	Colobus_angolensis_palliatus
ENSPREG00000004100	dkc1	75	66.319	ENSCGRG00001016789	-	89	59.368	Cricetulus_griseus_chok1gshd
ENSPREG00000004100	dkc1	84	80.405	ENSCGRG00001014574	-	86	81.179	Cricetulus_griseus_chok1gshd
ENSPREG00000004100	dkc1	84	80.405	ENSCGRG00000016075	-	86	81.179	Cricetulus_griseus_crigri
ENSPREG00000004100	dkc1	75	66.319	ENSCGRG00000014809	-	78	66.846	Cricetulus_griseus_crigri
ENSPREG00000004100	dkc1	92	86.170	ENSCSEG00000012633	dkc1	90	87.529	Cynoglossus_semilaevis
ENSPREG00000004100	dkc1	88	93.196	ENSCVAG00000010155	dkc1	94	92.324	Cyprinodon_variegatus
ENSPREG00000004100	dkc1	79	90.640	ENSDARG00000016484	dkc1	87	88.662	Danio_rerio
ENSPREG00000004100	dkc1	84	80.499	ENSDNOG00000004218	DKC1	86	81.179	Dasypus_novemcinctus
ENSPREG00000004100	dkc1	54	71.841	ENSDORG00000013566	-	91	71.841	Dipodomys_ordii
ENSPREG00000004100	dkc1	77	72.658	FBgn0259937	Nop60B	88	68.000	Drosophila_melanogaster
ENSPREG00000004100	dkc1	77	84.596	ENSETEG00000016095	DKC1	90	78.685	Echinops_telfairi
ENSPREG00000004100	dkc1	67	74.344	ENSEBUG00000015962	dkc1	98	81.100	Eptatretus_burgeri
ENSPREG00000004100	dkc1	84	78.571	ENSEASG00005007484	DKC1	86	78.795	Equus_asinus_asinus
ENSPREG00000004100	dkc1	84	78.571	ENSECAG00000023524	DKC1	86	78.795	Equus_caballus
ENSPREG00000004100	dkc1	76	86.340	ENSEEUG00000003323	DKC1	99	81.604	Erinaceus_europaeus
ENSPREG00000004100	dkc1	86	87.330	ENSELUG00000014538	dkc1	90	87.965	Esox_lucius
ENSPREG00000004100	dkc1	77	86.616	ENSFCAG00000006577	DKC1	86	81.149	Felis_catus
ENSPREG00000004100	dkc1	83	81.735	ENSFALG00000011496	DKC1	86	81.556	Ficedula_albicollis
ENSPREG00000004100	dkc1	84	82.831	ENSFDAG00000002516	DKC1	88	81.922	Fukomys_damarensis
ENSPREG00000004100	dkc1	85	92.130	ENSFHEG00000004627	dkc1	90	94.222	Fundulus_heteroclitus
ENSPREG00000004100	dkc1	77	89.770	ENSGMOG00000017277	dkc1	100	89.770	Gadus_morhua
ENSPREG00000004100	dkc1	83	83.023	ENSGALG00000005054	DKC1	86	81.166	Gallus_gallus
ENSPREG00000004100	dkc1	100	96.564	ENSGAFG00000011486	dkc1	95	96.564	Gambusia_affinis
ENSPREG00000004100	dkc1	78	93.216	ENSGACG00000004373	dkc1	96	93.921	Gasterosteus_aculeatus
ENSPREG00000004100	dkc1	84	81.524	ENSGAGG00000011330	DKC1	84	82.217	Gopherus_agassizii
ENSPREG00000004100	dkc1	84	80.272	ENSGGOG00000001045	DKC1	86	80.952	Gorilla_gorilla
ENSPREG00000004100	dkc1	91	88.817	ENSHBUG00000012436	dkc1	90	90.487	Haplochromis_burtoni
ENSPREG00000004100	dkc1	77	85.859	ENSHGLG00000000649	DKC1	85	80.365	Heterocephalus_glaber_female
ENSPREG00000004100	dkc1	77	85.859	ENSHGLG00100001153	DKC1	86	80.365	Heterocephalus_glaber_male
ENSPREG00000004100	dkc1	90	86.393	ENSHCOG00000021099	dkc1	88	88.616	Hippocampus_comes
ENSPREG00000004100	dkc1	85	85.194	ENSIPUG00000010309	dkc1	85	85.973	Ictalurus_punctatus
ENSPREG00000004100	dkc1	84	74.253	ENSSTOG00000020149	-	85	74.306	Ictidomys_tridecemlineatus
ENSPREG00000004100	dkc1	84	69.595	ENSSTOG00000011904	-	82	69.595	Ictidomys_tridecemlineatus
ENSPREG00000004100	dkc1	84	80.135	ENSSTOG00000001074	-	91	80.361	Ictidomys_tridecemlineatus
ENSPREG00000004100	dkc1	54	72.302	ENSJJAG00000010086	-	92	72.302	Jaculus_jaculus
ENSPREG00000004100	dkc1	85	88.657	ENSKMAG00000008010	dkc1	90	89.357	Kryptolebias_marmoratus
ENSPREG00000004100	dkc1	89	88.621	ENSLBEG00000019122	dkc1	93	88.962	Labrus_bergylta
ENSPREG00000004100	dkc1	85	80.876	ENSLACG00000014025	DKC1	90	86.111	Latimeria_chalumnae
ENSPREG00000004100	dkc1	85	87.844	ENSLOCG00000013713	dkc1	88	89.858	Lepisosteus_oculatus
ENSPREG00000004100	dkc1	85	79.043	ENSLAFG00000000221	DKC1	87	80.313	Loxodonta_africana
ENSPREG00000004100	dkc1	84	80.317	ENSMFAG00000032398	DKC1	74	80.995	Macaca_fascicularis
ENSPREG00000004100	dkc1	84	80.045	ENSMMUG00000005768	DKC1	86	80.726	Macaca_mulatta
ENSPREG00000004100	dkc1	84	80.045	ENSMNEG00000034503	DKC1	86	80.726	Macaca_nemestrina
ENSPREG00000004100	dkc1	84	80.045	ENSMLEG00000034422	DKC1	86	80.726	Mandrillus_leucophaeus
ENSPREG00000004100	dkc1	80	94.840	ENSMAMG00000005427	dkc1	89	95.960	Mastacembelus_armatus
ENSPREG00000004100	dkc1	91	89.032	ENSMZEG00005014503	dkc1	90	90.708	Maylandia_zebra
ENSPREG00000004100	dkc1	71	90.083	ENSMGAG00000009238	DKC1	89	83.252	Meleagris_gallopavo
ENSPREG00000004100	dkc1	54	71.841	ENSMAUG00000016454	-	91	71.841	Mesocricetus_auratus
ENSPREG00000004100	dkc1	78	72.372	ENSMICG00000002818	-	99	75.616	Microcebus_murinus
ENSPREG00000004100	dkc1	84	78.851	ENSMICG00000038751	-	87	78.851	Microcebus_murinus
ENSPREG00000004100	dkc1	54	69.675	ENSMOCG00000001169	-	91	69.675	Microtus_ochrogaster
ENSPREG00000004100	dkc1	80	92.927	ENSMMOG00000020348	dkc1	89	91.198	Mola_mola
ENSPREG00000004100	dkc1	83	82.394	ENSMODG00000009243	DKC1	74	82.783	Monodelphis_domestica
ENSPREG00000004100	dkc1	88	88.419	ENSMALG00000009454	dkc1	85	91.244	Monopterus_albus
ENSPREG00000004100	dkc1	85	68.653	MGP_CAROLIEiJ_G0033191	Dkc1	86	81.102	Mus_caroli
ENSPREG00000004100	dkc1	87	78.478	ENSMUSG00000031403	Dkc1	86	80.866	Mus_musculus
ENSPREG00000004100	dkc1	87	78.775	MGP_PahariEiJ_G0031735	Dkc1	85	81.193	Mus_pahari
ENSPREG00000004100	dkc1	87	78.478	MGP_SPRETEiJ_G0034351	Dkc1	86	80.866	Mus_spretus
ENSPREG00000004100	dkc1	91	77.106	ENSMPUG00000016136	DKC1	84	77.996	Mustela_putorius_furo
ENSPREG00000004100	dkc1	84	76.802	ENSMLUG00000011918	DKC1	89	76.017	Myotis_lucifugus
ENSPREG00000004100	dkc1	54	72.202	ENSNGAG00000015724	-	92	72.202	Nannospalax_galili
ENSPREG00000004100	dkc1	78	95.729	ENSNBRG00000005638	dkc1	80	95.729	Neolamprologus_brichardi
ENSPREG00000004100	dkc1	84	80.045	ENSNLEG00000014323	DKC1	86	80.726	Nomascus_leucogenys
ENSPREG00000004100	dkc1	78	82.045	ENSMEUG00000001066	DKC1	87	82.707	Notamacropus_eugenii
ENSPREG00000004100	dkc1	68	79.598	ENSOPRG00000005248	DKC1	69	79.598	Ochotona_princeps
ENSPREG00000004100	dkc1	54	71.841	ENSODEG00000000549	-	91	71.841	Octodon_degus
ENSPREG00000004100	dkc1	77	87.626	ENSODEG00000011816	-	86	82.380	Octodon_degus
ENSPREG00000004100	dkc1	91	89.871	ENSONIG00000013889	dkc1	86	92.379	Oreochromis_niloticus
ENSPREG00000004100	dkc1	82	83.295	ENSOANG00000008713	-	90	83.028	Ornithorhynchus_anatinus
ENSPREG00000004100	dkc1	55	64.169	ENSOANG00000022295	-	86	63.462	Ornithorhynchus_anatinus
ENSPREG00000004100	dkc1	84	79.545	ENSOCUG00000012646	DKC1	86	80.000	Oryctolagus_cuniculus
ENSPREG00000004100	dkc1	90	86.928	ENSORLG00000018748	dkc1	85	88.046	Oryzias_latipes
ENSPREG00000004100	dkc1	84	88.167	ENSOMEG00000005786	dkc1	82	90.377	Oryzias_melastigma
ENSPREG00000004100	dkc1	84	78.492	ENSOGAG00000003399	DKC1	86	78.714	Otolemur_garnettii
ENSPREG00000004100	dkc1	84	81.507	ENSOARG00000003047	DKC1	88	80.631	Ovis_aries
ENSPREG00000004100	dkc1	77	86.364	ENSPPAG00000023820	DKC1	86	81.179	Pan_paniscus
ENSPREG00000004100	dkc1	77	86.616	ENSPPRG00000009104	DKC1	86	81.149	Panthera_pardus
ENSPREG00000004100	dkc1	83	82.243	ENSPTIG00000017469	DKC1	85	83.215	Panthera_tigris_altaica
ENSPREG00000004100	dkc1	84	80.272	ENSPTRG00000043416	-	74	80.952	Pan_troglodytes
ENSPREG00000004100	dkc1	84	80.272	ENSPTRG00000022449	DKC1	86	80.952	Pan_troglodytes
ENSPREG00000004100	dkc1	84	80.045	ENSPANG00000011978	DKC1	86	80.726	Papio_anubis
ENSPREG00000004100	dkc1	85	86.927	ENSPKIG00000008443	dkc1	92	86.927	Paramormyrops_kingsleyae
ENSPREG00000004100	dkc1	70	88.547	ENSPSIG00000013765	DKC1	86	88.796	Pelodiscus_sinensis
ENSPREG00000004100	dkc1	92	76.613	ENSPMGG00000004097	dkc1	83	80.531	Periophthalmus_magnuspinnatus
ENSPREG00000004100	dkc1	65	80.000	ENSPEMG00000013348	Dkc1	83	84.916	Peromyscus_maniculatus_bairdii
ENSPREG00000004100	dkc1	77	86.616	ENSPCIG00000016706	DKC1	72	82.326	Phascolarctos_cinereus
ENSPREG00000004100	dkc1	94	96.050	ENSPFOG00000018653	dkc1	100	99.200	Poecilia_formosa
ENSPREG00000004100	dkc1	100	98.192	ENSPLAG00000003272	dkc1	100	98.192	Poecilia_latipinna
ENSPREG00000004100	dkc1	94	95.833	ENSPMEG00000010413	dkc1	100	98.600	Poecilia_mexicana
ENSPREG00000004100	dkc1	84	80.272	ENSPPYG00000020892	DKC1	86	80.952	Pongo_abelii
ENSPREG00000004100	dkc1	71	87.293	ENSPCAG00000015034	DKC1	73	85.829	Procavia_capensis
ENSPREG00000004100	dkc1	84	79.365	ENSPCOG00000026874	DKC1	86	80.045	Propithecus_coquereli
ENSPREG00000004100	dkc1	84	80.974	ENSPVAG00000009222	DKC1	86	81.671	Pteropus_vampyrus
ENSPREG00000004100	dkc1	92	87.474	ENSPNYG00000020063	dkc1	88	89.462	Pundamilia_nyererei
ENSPREG00000004100	dkc1	86	87.185	ENSPNAG00000005780	dkc1	86	87.586	Pygocentrus_nattereri
ENSPREG00000004100	dkc1	84	77.551	ENSRNOG00000055562	Dkc1	86	77.778	Rattus_norvegicus
ENSPREG00000004100	dkc1	84	80.045	ENSRBIG00000028457	DKC1	74	80.726	Rhinopithecus_bieti
ENSPREG00000004100	dkc1	84	80.045	ENSRROG00000044780	DKC1	86	80.726	Rhinopithecus_roxellana
ENSPREG00000004100	dkc1	84	65.046	YLR175W	-	89	65.509	Saccharomyces_cerevisiae
ENSPREG00000004100	dkc1	84	80.272	ENSSBOG00000033746	DKC1	85	80.952	Saimiri_boliviensis_boliviensis
ENSPREG00000004100	dkc1	83	82.243	ENSSHAG00000002463	DKC1	93	80.455	Sarcophilus_harrisii
ENSPREG00000004100	dkc1	85	85.977	ENSSFOG00015009585	dkc1	85	86.207	Scleropages_formosus
ENSPREG00000004100	dkc1	87	85.809	ENSSMAG00000002552	dkc1	89	87.665	Scophthalmus_maximus
ENSPREG00000004100	dkc1	84	90.465	ENSSDUG00000009963	dkc1	90	90.287	Seriola_dumerili
ENSPREG00000004100	dkc1	95	84.091	ENSSLDG00000019342	dkc1	87	90.300	Seriola_lalandi_dorsalis
ENSPREG00000004100	dkc1	78	81.407	ENSSARG00000001822	DKC1	87	77.397	Sorex_araneus
ENSPREG00000004100	dkc1	77	85.606	ENSSPUG00000018907	DKC1	87	78.509	Sphenodon_punctatus
ENSPREG00000004100	dkc1	95	84.990	ENSSPAG00000002585	dkc1	85	88.791	Stegastes_partitus
ENSPREG00000004100	dkc1	89	75.208	ENSSSCG00000012823	DKC1	84	85.750	Sus_scrofa
ENSPREG00000004100	dkc1	77	85.678	ENSTGUG00000006781	DKC1	99	78.478	Taeniopygia_guttata
ENSPREG00000004100	dkc1	92	82.231	ENSTRUG00000004413	dkc1	90	88.444	Takifugu_rubripes
ENSPREG00000004100	dkc1	85	72.072	ENSTNIG00000002582	dkc1	91	70.323	Tetraodon_nigroviridis
ENSPREG00000004100	dkc1	53	87.361	ENSTBEG00000011262	DKC1	85	80.583	Tupaia_belangeri
ENSPREG00000004100	dkc1	54	86.282	ENSTTRG00000008089	DKC1	55	86.282	Tursiops_truncatus
ENSPREG00000004100	dkc1	78	85.894	ENSUAMG00000022721	DKC1	89	82.464	Ursus_americanus
ENSPREG00000004100	dkc1	87	78.700	ENSUMAG00000016899	DKC1	98	83.709	Ursus_maritimus
ENSPREG00000004100	dkc1	77	84.367	ENSVVUG00000020734	-	72	82.578	Vulpes_vulpes
ENSPREG00000004100	dkc1	77	71.212	ENSVVUG00000021671	-	74	71.178	Vulpes_vulpes
ENSPREG00000004100	dkc1	88	82.340	ENSXETG00000032517	DKC1	91	80.467	Xenopus_tropicalis
ENSPREG00000004100	dkc1	92	97.665	ENSXCOG00000005498	dkc1	100	97.665	Xiphophorus_couchianus
ENSPREG00000004100	dkc1	90	97.800	ENSXMAG00000004919	dkc1	100	97.800	Xiphophorus_maculatus