EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPREG00000004209 (Gene tree)
Gene ID: 103473522
Gene Symbol: chd1
Alias: fc26h11|fk85d05|si:dkey-106m21.4|wu:fc26h11|wu:fk85d05|zgc:173506
Full Name: chromodomain helicase DNA binding protein 1
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Minus strand
Length: 96673 bases
Position: chrLG12:10350828-10447500
Accession: 103473522
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000006265	ResIII	PF04851.15	6.1e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000006351	-	4980	-	ENSPREP00000006265	1659 (aa)	-	-
ENSPRET00000006299	-	7472	-	ENSPREP00000006213	1640 (aa)	-	-
ENSPRET00000006269	-	7805	XM_008423827	ENSPREP00000006183	1751 (aa)	XP_008422049	UPI0004A3BB5E

Gene Model

Click here to download ENSPREG00000004209's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000004209's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPREG00000004209	chd1	57	34.921	ENSPREG00000022653	chd6	94	41.556

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000004209	chd1	97	74.759	ENSG00000153922	CHD1	96	74.265	Homo_sapiens
ENSPREG00000004209	chd1	68	91.996	ENSAPOG00000005764	chd1	96	91.996	Acanthochromis_polyacanthus
ENSPREG00000004209	chd1	90	87.078	ENSAOCG00000023105	chd1	94	87.144	Amphiprion_ocellaris
ENSPREG00000004209	chd1	90	88.278	ENSAPEG00000013544	chd1	94	88.344	Amphiprion_percula
ENSPREG00000004209	chd1	97	85.099	ENSATEG00000010676	chd1	98	84.505	Anabas_testudineus
ENSPREG00000004209	chd1	73	85.149	ENSAMXG00000010843	chd1	93	85.149	Astyanax_mexicanus
ENSPREG00000004209	chd1	97	74.714	ENSCATG00000032035	CHD1	97	74.805	Cercocebus_atys
ENSPREG00000004209	chd1	97	74.669	ENSCSAG00000015339	CHD1	96	74.176	Chlorocebus_sabaeus
ENSPREG00000004209	chd1	97	72.892	ENSCANG00000036916	CHD1	97	72.563	Colobus_angolensis_palliatus
ENSPREG00000004209	chd1	97	73.599	ENSCGRG00001023943	Chd1	96	73.574	Cricetulus_griseus_chok1gshd
ENSPREG00000004209	chd1	97	73.599	ENSCGRG00000008652	Chd1	96	73.574	Cricetulus_griseus_crigri
ENSPREG00000004209	chd1	90	84.937	ENSCSEG00000009553	chd1	95	85.269	Cynoglossus_semilaevis
ENSPREG00000004209	chd1	91	72.543	ENSEASG00005016110	CHD1	97	76.686	Equus_asinus_asinus
ENSPREG00000004209	chd1	90	81.067	ENSELUG00000017677	chd1	93	81.067	Esox_lucius
ENSPREG00000004209	chd1	74	94.531	ENSFHEG00000021164	chd1	89	94.531	Fundulus_heteroclitus
ENSPREG00000004209	chd1	97	83.476	ENSGMOG00000001537	chd1	96	72.938	Gadus_morhua
ENSPREG00000004209	chd1	93	74.318	ENSGALG00000031327	-	94	75.016	Gallus_gallus
ENSPREG00000004209	chd1	85	98.571	ENSGAFG00000019880	chd1	97	92.338	Gambusia_affinis
ENSPREG00000004209	chd1	97	71.971	ENSGGOG00000011463	CHD1	97	71.309	Gorilla_gorilla
ENSPREG00000004209	chd1	90	86.083	ENSHCOG00000014222	chd1	93	86.216	Hippocampus_comes
ENSPREG00000004209	chd1	90	81.605	ENSIPUG00000001369	chd1	95	81.605	Ictalurus_punctatus
ENSPREG00000004209	chd1	60	77.646	ENSLAFG00000023183	CHD1	94	76.500	Loxodonta_africana
ENSPREG00000004209	chd1	97	74.714	ENSMFAG00000031226	CHD1	97	74.805	Macaca_fascicularis
ENSPREG00000004209	chd1	81	77.360	ENSMMUG00000014090	CHD1	95	76.742	Macaca_mulatta
ENSPREG00000004209	chd1	97	74.669	ENSMNEG00000045073	CHD1	97	74.805	Macaca_nemestrina
ENSPREG00000004209	chd1	97	70.652	ENSMLEG00000041096	CHD1	97	70.776	Mandrillus_leucophaeus
ENSPREG00000004209	chd1	74	89.487	ENSMZEG00005010957	chd1	92	89.641	Maylandia_zebra
ENSPREG00000004209	chd1	97	73.349	ENSMOCG00000019121	Chd1	96	73.386	Microtus_ochrogaster
ENSPREG00000004209	chd1	81	87.776	ENSMALG00000013317	chd1	95	86.819	Monopterus_albus
ENSPREG00000004209	chd1	97	73.678	MGP_CAROLIEiJ_G0021099	Chd1	94	77.953	Mus_caroli
ENSPREG00000004209	chd1	97	73.725	ENSMUSG00000023852	Chd1	94	78.051	Mus_musculus
ENSPREG00000004209	chd1	97	73.510	MGP_PahariEiJ_G0023414	Chd1	94	77.974	Mus_pahari
ENSPREG00000004209	chd1	90	85.838	ENSNBRG00000006860	chd1	93	85.904	Neolamprologus_brichardi
ENSPREG00000004209	chd1	97	73.174	ENSNLEG00000014493	CHD1	97	72.689	Nomascus_leucogenys
ENSPREG00000004209	chd1	98	73.913	ENSOANG00000004891	CHD1	100	77.823	Ornithorhynchus_anatinus
ENSPREG00000004209	chd1	61	85.998	ENSORLG00015016725	chd1	95	86.125	Oryzias_latipes_hsok
ENSPREG00000004209	chd1	97	73.770	ENSPPAG00000043367	CHD1	98	73.178	Pan_paniscus
ENSPREG00000004209	chd1	97	74.684	ENSPTRG00000017103	CHD1	97	74.190	Pan_troglodytes
ENSPREG00000004209	chd1	97	74.714	ENSPANG00000006387	CHD1	97	74.805	Papio_anubis
ENSPREG00000004209	chd1	95	81.118	ENSPKIG00000024719	chd1	95	82.113	Paramormyrops_kingsleyae
ENSPREG00000004209	chd1	75	87.440	ENSPMGG00000005785	chd1	93	87.370	Periophthalmus_magnuspinnatus
ENSPREG00000004209	chd1	97	74.424	ENSPEMG00000015939	Chd1	96	73.605	Peromyscus_maniculatus_bairdii
ENSPREG00000004209	chd1	53	98.622	ENSPLAG00000006473	-	89	98.622	Poecilia_latipinna
ENSPREG00000004209	chd1	81	76.809	ENSRNOG00000014434	Chd1	95	76.471	Rattus_norvegicus
ENSPREG00000004209	chd1	97	73.855	ENSRBIG00000044325	CHD1	97	73.630	Rhinopithecus_bieti
ENSPREG00000004209	chd1	97	75.015	ENSRROG00000001726	CHD1	97	74.834	Rhinopithecus_roxellana
ENSPREG00000004209	chd1	75	81.470	ENSSFOG00015007161	chd1	90	82.711	Scleropages_formosus
ENSPREG00000004209	chd1	81	87.823	ENSSDUG00000018314	chd1	95	86.681	Seriola_dumerili
ENSPREG00000004209	chd1	53	91.011	ENSSLDG00000017244	chd1	88	91.705	Seriola_lalandi_dorsalis
ENSPREG00000004209	chd1	81	88.339	ENSSPAG00000007024	chd1	95	89.536	Stegastes_partitus
ENSPREG00000004209	chd1	84	78.516	ENSSSCG00000014177	CHD1	96	78.466	Sus_scrofa
ENSPREG00000004209	chd1	97	81.104	ENSTRUG00000010282	chd1	96	81.212	Takifugu_rubripes
ENSPREG00000004209	chd1	73	86.431	ENSTNIG00000007101	chd1	95	86.967	Tetraodon_nigroviridis
ENSPREG00000004209	chd1	99	90.789	ENSXCOG00000017184	chd1	100	90.789	Xiphophorus_couchianus
ENSPREG00000004209	chd1	83	97.087	ENSXMAG00000014538	chd1	99	97.087	Xiphophorus_maculatus