EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
Description
Ensembl ID
ENSPREG00000004417 (Gene tree)
Gene ID
103459275
Gene Symbol
cpsf6
Alias
wu:fa22f12|zgc:85819
Full Name
cleavage and polyadenylation specific factor 6
Gene Type
protein_coding
Species
Poecilia_reticulata
Status
putative
Strand
Minus strand
Length
6081 bases
Position
chrLG23:5654913-5660993
Accession
103459275
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSPREP00000006400RRM_1PF00076.223.4e-0711
ENSPREP00000006376RRM_1PF00076.224.1e-0711
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSPRET00000006485-1632-ENSPREP00000006400543 (aa)--
ENSPRET00000006462-1761XM_008400713ENSPREP00000006376586 (aa)XP_008398935UPI0004A2B2CF
Gene Model
Click here to download ENSPREG00000004417's gene model file
Pathways
Pathway IDPathway NameSource
pret03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000004417's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSPREG00000004417cpsf65278.873ENSG00000111605CPSF68879.787Homo_sapiens
ENSPREG00000004417cpsf66672.222ENSG00000149532CPSF710050.000Homo_sapiens
ENSPREG00000004417cpsf65278.947ENSAMEG00000011781CPSF65378.547Ailuropoda_melanoleuca
ENSPREG00000004417cpsf65938.750ENSAOCG00000012357CPSF76337.278Amphiprion_ocellaris
ENSPREG00000004417cpsf69490.944ENSAOCG00000017865cpsf69490.944Amphiprion_ocellaris
ENSPREG00000004417cpsf65939.375ENSAPEG00000015375CPSF76337.278Amphiprion_percula
ENSPREG00000004417cpsf65278.169ENSACAG00000004381CPSF65377.778Anolis_carolinensis
ENSPREG00000004417cpsf66344.767ENSANAG00000024635CPSF76946.073Aotus_nancymaae
ENSPREG00000004417cpsf67783.051ENSANAG00000019240CPSF65077.407Aotus_nancymaae
ENSPREG00000004417cpsf69592.252ENSACLG00000026325cpsf65592.260Astatotilapia_calliptera
ENSPREG00000004417cpsf69477.351ENSAMXG00000016745CPSF68790.361Astyanax_mexicanus
ENSPREG00000004417cpsf66153.571ENSBTAG00000015263CPSF77150.811Bos_taurus
ENSPREG00000004417cpsf65278.873ENSBTAG00000007323CPSF65278.472Bos_taurus
ENSPREG00000004417cpsf66574.286ENSCJAG00000019282CPSF78055.414Callithrix_jacchus
ENSPREG00000004417cpsf69276.265ENSCJAG00000001798CPSF65278.472Callithrix_jacchus
ENSPREG00000004417cpsf65758.865ENSCAFG00000016152CPSF77151.351Canis_familiaris
ENSPREG00000004417cpsf67482.166ENSCAFG00000000424CPSF67183.444Canis_familiaris
ENSPREG00000004417cpsf65758.865ENSCAFG00020012753CPSF77151.351Canis_lupus_dingo
ENSPREG00000004417cpsf65278.873ENSCAFG00020016950CPSF65278.472Canis_lupus_dingo
ENSPREG00000004417cpsf66153.571ENSCHIG00000014655CPSF77150.811Capra_hircus
ENSPREG00000004417cpsf65278.873ENSCHIG00000010792CPSF65278.472Capra_hircus
ENSPREG00000004417cpsf65758.865ENSTSYG00000010138-7151.351Carlito_syrichta
ENSPREG00000004417cpsf68976.265ENSTSYG00000008591CPSF67781.579Carlito_syrichta
ENSPREG00000004417cpsf65458.865ENSCAPG00000006384CPSF77051.351Cavia_aperea
ENSPREG00000004417cpsf65278.873ENSCPOG00000015201CPSF65278.472Cavia_porcellus
ENSPREG00000004417cpsf65758.865ENSCPOG00000009980CPSF77151.351Cavia_porcellus
ENSPREG00000004417cpsf69275.969ENSCCAG00000028149CPSF65278.472Cebus_capucinus
ENSPREG00000004417cpsf65758.156ENSCCAG00000032367CPSF77150.811Cebus_capucinus
ENSPREG00000004417cpsf66058.156ENSCATG00000042801CPSF77350.811Cercocebus_atys
ENSPREG00000004417cpsf65278.873ENSCATG00000039288CPSF65278.472Cercocebus_atys
ENSPREG00000004417cpsf65758.865ENSCLAG00000003174CPSF77150.811Chinchilla_lanigera
ENSPREG00000004417cpsf66058.156ENSCSAG00000006414CPSF77350.811Chlorocebus_sabaeus
ENSPREG00000004417cpsf65279.225ENSCPBG00000013322CPSF65278.819Chrysemys_picta_bellii
ENSPREG00000004417cpsf65758.865ENSCGRG00001020382Cpsf77153.804Cricetulus_griseus_chok1gshd
ENSPREG00000004417cpsf65278.873ENSCGRG00001018082Cpsf65278.472Cricetulus_griseus_chok1gshd
ENSPREG00000004417cpsf65175.090ENSCGRG00000016909Cpsf65077.612Cricetulus_griseus_crigri
ENSPREG00000004417cpsf69540.111ENSCGRG00000017954Cpsf77353.804Cricetulus_griseus_crigri
ENSPREG00000004417cpsf65039.175ENSCSEG00000001956CPSF75743.972Cynoglossus_semilaevis
ENSPREG00000004417cpsf69590.811ENSCSEG00000008967cpsf69489.788Cynoglossus_semilaevis
ENSPREG00000004417cpsf610096.587ENSCVAG00000014857cpsf610096.587Cyprinodon_variegatus
ENSPREG00000004417cpsf66637.864ENSCVAG00000007392CPSF76643.448Cyprinodon_variegatus
ENSPREG00000004417cpsf65283.446ENSDARG00000018618cpsf65272.840Danio_rerio
ENSPREG00000004417cpsf66675.714ENSDNOG00000018517CPSF78056.051Dasypus_novemcinctus
ENSPREG00000004417cpsf65279.225ENSDNOG00000015292CPSF65278.819Dasypus_novemcinctus
ENSPREG00000004417cpsf66581.106ENSETEG00000002097CPSF66382.126Echinops_telfairi
ENSPREG00000004417cpsf69540.665ENSETEG00000003765CPSF77055.556Echinops_telfairi
ENSPREG00000004417cpsf69056.579ENSEBUG00000003540cpsf66777.381Eptatretus_burgeri
ENSPREG00000004417cpsf65278.873ENSEASG00005008066CPSF65278.472Equus_asinus_asinus
ENSPREG00000004417cpsf65758.865ENSEASG00005008196CPSF77151.351Equus_asinus_asinus
ENSPREG00000004417cpsf66673.611ENSECAG00000018521CPSF78256.051Equus_caballus
ENSPREG00000004417cpsf65278.873ENSECAG00000015988CPSF65278.472Equus_caballus
ENSPREG00000004417cpsf65281.690ENSFCAG00000002855CPSF65278.472Felis_catus
ENSPREG00000004417cpsf66673.611ENSFCAG00000013677CPSF78256.051Felis_catus
ENSPREG00000004417cpsf66448.705ENSFALG00000011927CPSF77654.545Ficedula_albicollis
ENSPREG00000004417cpsf68841.718ENSFDAG00000003919CPSF77151.351Fukomys_damarensis
ENSPREG00000004417cpsf65274.823ENSFDAG00000002281CPSF65174.476Fukomys_damarensis
ENSPREG00000004417cpsf610093.333ENSFHEG00000019693cpsf610093.333Fundulus_heteroclitus
ENSPREG00000004417cpsf65394.798ENSGMOG00000012951cpsf65395.000Gadus_morhua
ENSPREG00000004417cpsf66152.850ENSGALG00000040962CPSF76356.250Gallus_gallus
ENSPREG00000004417cpsf65279.225ENSGAGG00000010228CPSF65278.819Gopherus_agassizii
ENSPREG00000004417cpsf65278.873ENSGGOG00000008211CPSF65278.472Gorilla_gorilla
ENSPREG00000004417cpsf69592.432ENSHBUG00000005998cpsf69490.559Haplochromis_burtoni
ENSPREG00000004417cpsf65278.873ENSHGLG00000000792CPSF65278.472Heterocephalus_glaber_female
ENSPREG00000004417cpsf66058.865ENSHGLG00000019090-7351.351Heterocephalus_glaber_female
ENSPREG00000004417cpsf65274.558ENSHGLG00100013861CPSF65077.612Heterocephalus_glaber_male
ENSPREG00000004417cpsf66058.865ENSHGLG00100013933-7351.351Heterocephalus_glaber_male
ENSPREG00000004417cpsf69584.643ENSHCOG00000014555cpsf69586.607Hippocampus_comes
ENSPREG00000004417cpsf65758.865ENSSTOG00000007708CPSF77151.351Ictidomys_tridecemlineatus
ENSPREG00000004417cpsf66058.865ENSJJAG00000019390Cpsf77351.351Jaculus_jaculus
ENSPREG00000004417cpsf69493.050ENSKMAG00000014794cpsf69492.857Kryptolebias_marmoratus
ENSPREG00000004417cpsf65740.714ENSLBEG00000000947CPSF77538.798Labrus_bergylta
ENSPREG00000004417cpsf69586.501ENSLBEG00000015762cpsf69590.409Labrus_bergylta
ENSPREG00000004417cpsf69332.576ENSLACG00000005542CPSF75845.638Latimeria_chalumnae
ENSPREG00000004417cpsf65281.338ENSLACG00000008625CPSF65277.431Latimeria_chalumnae
ENSPREG00000004417cpsf66688.442ENSLOCG00000016190cpsf66687.615Lepisosteus_oculatus
ENSPREG00000004417cpsf68373.529ENSLAFG00000030413CPSF67881.250Loxodonta_africana
ENSPREG00000004417cpsf65759.574ENSLAFG00000032084CPSF77151.351Loxodonta_africana
ENSPREG00000004417cpsf65758.156ENSMFAG00000001401CPSF77150.811Macaca_fascicularis
ENSPREG00000004417cpsf65278.873ENSMFAG00000045318CPSF65278.472Macaca_fascicularis
ENSPREG00000004417cpsf65278.873ENSMMUG00000002921CPSF65278.472Macaca_mulatta
ENSPREG00000004417cpsf66058.156ENSMMUG00000015280CPSF77350.811Macaca_mulatta
ENSPREG00000004417cpsf66058.156ENSMNEG00000029585CPSF77350.811Macaca_nemestrina
ENSPREG00000004417cpsf65278.873ENSMNEG00000036311CPSF65278.472Macaca_nemestrina
ENSPREG00000004417cpsf65758.156ENSMLEG00000031269CPSF76950.811Mandrillus_leucophaeus
ENSPREG00000004417cpsf69587.027ENSMAMG00000010385cpsf69590.991Mastacembelus_armatus
ENSPREG00000004417cpsf69592.432ENSMZEG00005007975cpsf69490.559Maylandia_zebra
ENSPREG00000004417cpsf69641.538ENSMGAG00000004876CPSF76258.235Meleagris_gallopavo
ENSPREG00000004417cpsf65274.733ENSMGAG00000010552CPSF65077.612Meleagris_gallopavo
ENSPREG00000004417cpsf65758.865ENSMAUG00000013020Cpsf77151.351Mesocricetus_auratus
ENSPREG00000004417cpsf65278.873ENSMAUG00000013240Cpsf65278.472Mesocricetus_auratus
ENSPREG00000004417cpsf65278.873ENSMICG00000007385-5278.472Microcebus_murinus
ENSPREG00000004417cpsf65758.865ENSMICG00000013788CPSF77151.351Microcebus_murinus
ENSPREG00000004417cpsf65278.873ENSMOCG00000013982Cpsf65278.472Microtus_ochrogaster
ENSPREG00000004417cpsf65758.865ENSMOCG00000000072Cpsf77151.351Microtus_ochrogaster
ENSPREG00000004417cpsf65278.521ENSMODG00000007123CPSF65278.125Monodelphis_domestica
ENSPREG00000004417cpsf66549.721ENSMODG00000020364CPSF77251.295Monodelphis_domestica
ENSPREG00000004417cpsf67492.202ENSMALG00000014908cpsf67692.727Monopterus_albus
ENSPREG00000004417cpsf65758.865MGP_CAROLIEiJ_G0022690Cpsf77151.351Mus_caroli
ENSPREG00000004417cpsf65278.873MGP_CAROLIEiJ_G0015834Cpsf65278.472Mus_caroli
ENSPREG00000004417cpsf65758.865ENSMUSG00000034820Cpsf77151.351Mus_musculus
ENSPREG00000004417cpsf65278.873ENSMUSG00000055531Cpsf65278.472Mus_musculus
ENSPREG00000004417cpsf65758.865MGP_PahariEiJ_G0014184Cpsf77151.351Mus_pahari
ENSPREG00000004417cpsf66881.567MGP_PahariEiJ_G0031253Cpsf65678.472Mus_pahari
ENSPREG00000004417cpsf65278.873MGP_SPRETEiJ_G0016657Cpsf65278.472Mus_spretus
ENSPREG00000004417cpsf65758.865MGP_SPRETEiJ_G0023604Cpsf77151.351Mus_spretus
ENSPREG00000004417cpsf65458.156ENSMPUG00000014163CPSF76650.270Mustela_putorius_furo
ENSPREG00000004417cpsf67374.576ENSMLUG00000023960-7969.714Myotis_lucifugus
ENSPREG00000004417cpsf66453.571ENSMLUG00000013278CPSF77351.351Myotis_lucifugus
ENSPREG00000004417cpsf66384.783ENSMLUG00000028728-8679.866Myotis_lucifugus
ENSPREG00000004417cpsf65274.733ENSMLUG00000004172-5374.386Myotis_lucifugus
ENSPREG00000004417cpsf66548.603ENSNGAG00000005031Cpsf77151.351Nannospalax_galili
ENSPREG00000004417cpsf65278.873ENSNGAG00000015901Cpsf65278.472Nannospalax_galili
ENSPREG00000004417cpsf69490.559ENSNBRG00000004089cpsf69490.559Neolamprologus_brichardi
ENSPREG00000004417cpsf65278.873ENSNLEG00000003798CPSF65278.472Nomascus_leucogenys
ENSPREG00000004417cpsf65758.156ENSNLEG00000002529CPSF76550.811Nomascus_leucogenys
ENSPREG00000004417cpsf66549.721ENSMEUG00000002261CPSF77151.892Notamacropus_eugenii
ENSPREG00000004417cpsf67965.563ENSODEG00000007109-6664.780Octodon_degus
ENSPREG00000004417cpsf65754.861ENSODEG00000002610CPSF77151.064Octodon_degus
ENSPREG00000004417cpsf67180.808ENSODEG00000004418-8184.337Octodon_degus
ENSPREG00000004417cpsf65278.169ENSODEG00000018399-5277.778Octodon_degus
ENSPREG00000004417cpsf69589.730ENSONIG00000011702cpsf69590.450Oreochromis_niloticus
ENSPREG00000004417cpsf69640.901ENSOCUG00000024726CPSF77150.811Oryctolagus_cuniculus
ENSPREG00000004417cpsf67632.673ENSORLG00000006495CPSF75549.123Oryzias_latipes
ENSPREG00000004417cpsf67632.673ENSORLG00020012657CPSF75549.123Oryzias_latipes_hni
ENSPREG00000004417cpsf65758.865ENSOGAG00000027958CPSF76651.351Otolemur_garnettii
ENSPREG00000004417cpsf69536.707ENSOARG00000012937CPSF76450.811Ovis_aries
ENSPREG00000004417cpsf65758.156ENSPPAG00000028232CPSF77050.811Pan_paniscus
ENSPREG00000004417cpsf65281.690ENSPPRG00000021620CPSF65278.472Panthera_pardus
ENSPREG00000004417cpsf65758.865ENSPPRG00000008538CPSF77151.351Panthera_pardus
ENSPREG00000004417cpsf65758.865ENSPTIG00000021699CPSF77151.351Panthera_tigris_altaica
ENSPREG00000004417cpsf65758.156ENSPTRG00000003742CPSF77150.811Pan_troglodytes
ENSPREG00000004417cpsf65278.873ENSPTRG00000005205CPSF65278.472Pan_troglodytes
ENSPREG00000004417cpsf65758.156ENSPANG00000006037CPSF76750.811Papio_anubis
ENSPREG00000004417cpsf67880.882ENSPANG00000011641CPSF66182.609Papio_anubis
ENSPREG00000004417cpsf65746.067ENSPKIG00000018054CPSF75955.963Paramormyrops_kingsleyae
ENSPREG00000004417cpsf65284.211ENSPKIG00000003081-5282.578Paramormyrops_kingsleyae
ENSPREG00000004417cpsf65289.161ENSPKIG00000022613CPSF65289.236Paramormyrops_kingsleyae
ENSPREG00000004417cpsf66058.865ENSPEMG00000012648Cpsf77351.351Peromyscus_maniculatus_bairdii
ENSPREG00000004417cpsf65142.230ENSPMAG00000008077-6849.198Petromyzon_marinus
ENSPREG00000004417cpsf66549.721ENSPCIG00000002551CPSF77066.387Phascolarctos_cinereus
ENSPREG00000004417cpsf65278.521ENSPCIG00000019063CPSF65278.125Phascolarctos_cinereus
ENSPREG00000004417cpsf682100.000ENSPFOG00000006990cpsf699100.000Poecilia_formosa
ENSPREG00000004417cpsf610099.829ENSPLAG00000005715cpsf610099.829Poecilia_latipinna
ENSPREG00000004417cpsf610099.829ENSPMEG00000001353cpsf610099.829Poecilia_mexicana
ENSPREG00000004417cpsf65281.690ENSPPYG00000004756CPSF65278.472Pongo_abelii
ENSPREG00000004417cpsf65758.156ENSPPYG00000003188CPSF77150.811Pongo_abelii
ENSPREG00000004417cpsf69275.969ENSPCOG00000024384CPSF65278.472Propithecus_coquereli
ENSPREG00000004417cpsf65758.865ENSPCOG00000011976CPSF77151.351Propithecus_coquereli
ENSPREG00000004417cpsf65758.865ENSPVAG00000010675CPSF77151.351Pteropus_vampyrus
ENSPREG00000004417cpsf69592.432ENSPNYG00000020315cpsf65592.570Pundamilia_nyererei
ENSPREG00000004417cpsf65288.772ENSPNAG00000024098CPSF69487.115Pygocentrus_nattereri
ENSPREG00000004417cpsf66336.893ENSPNAG00000015073CPSF76649.640Pygocentrus_nattereri
ENSPREG00000004417cpsf65279.225ENSRNOG00000005927Cpsf65278.819Rattus_norvegicus
ENSPREG00000004417cpsf66059.574ENSRNOG00000020668Cpsf77351.892Rattus_norvegicus
ENSPREG00000004417cpsf66672.222ENSRBIG00000031429CPSF78255.414Rhinopithecus_bieti
ENSPREG00000004417cpsf65278.873ENSRBIG00000042827CPSF65278.472Rhinopithecus_bieti
ENSPREG00000004417cpsf65758.156ENSRROG00000045009CPSF77150.811Rhinopithecus_roxellana
ENSPREG00000004417cpsf65278.873ENSRROG00000042758CPSF65278.472Rhinopithecus_roxellana
ENSPREG00000004417cpsf65758.156ENSSBOG00000018431CPSF77150.811Saimiri_boliviensis_boliviensis
ENSPREG00000004417cpsf65953.769ENSSHAG00000011964CPSF76851.892Sarcophilus_harrisii
ENSPREG00000004417cpsf65379.791ENSSFOG00015015803CPSF65175.958Scleropages_formosus
ENSPREG00000004417cpsf66942.529ENSSFOG00015010288cpsf76745.000Scleropages_formosus
ENSPREG00000004417cpsf69587.568ENSSMAG00000000471cpsf65591.022Scophthalmus_maximus
ENSPREG00000004417cpsf69588.288ENSSDUG00000005024cpsf69592.252Seriola_dumerili
ENSPREG00000004417cpsf69588.288ENSSLDG00000009042cpsf69592.252Seriola_lalandi_dorsalis
ENSPREG00000004417cpsf68579.724ENSSARG00000006743CPSF67884.190Sorex_araneus
ENSPREG00000004417cpsf66155.385ENSSPUG00000019344CPSF77353.889Sphenodon_punctatus
ENSPREG00000004417cpsf69593.333ENSSPAG00000013906cpsf69491.329Stegastes_partitus
ENSPREG00000004417cpsf66675.714ENSSSCG00000013083CPSF78056.051Sus_scrofa
ENSPREG00000004417cpsf65278.873ENSSSCG00000038031CPSF65278.472Sus_scrofa
ENSPREG00000004417cpsf66248.333ENSTGUG00000006513CPSF77154.286Taeniopygia_guttata
ENSPREG00000004417cpsf69487.283ENSTNIG00000007576cpsf69487.283Tetraodon_nigroviridis
ENSPREG00000004417cpsf65458.156ENSTTRG00000011085CPSF77051.351Tursiops_truncatus
ENSPREG00000004417cpsf65758.865ENSUAMG00000017809CPSF77151.351Ursus_americanus
ENSPREG00000004417cpsf66058.865ENSUMAG00000011825CPSF77351.351Ursus_maritimus
ENSPREG00000004417cpsf65686.061ENSUMAG00000020779CPSF67086.061Ursus_maritimus
ENSPREG00000004417cpsf66675.714ENSVVUG00000004939CPSF78056.051Vulpes_vulpes
ENSPREG00000004417cpsf69740.441ENSXETG00000006715cpsf76546.893Xenopus_tropicalis
ENSPREG00000004417cpsf610097.091ENSXCOG00000013423cpsf610097.091Xiphophorus_couchianus
ENSPREG00000004417cpsf610099.829ENSXMAG00000003459cpsf610099.829Xiphophorus_maculatus

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