EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPREG00000004440 (Gene tree)
Gene ID: 103462703
Gene Symbol: ddb1
Alias: -
Full Name: damage specific DNA binding protein 1
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Plus strand
Length: 45285 bases
Position: chrLG3:22793572-22838856
Accession: 103462703
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000006475	CPSF_A	PF03178.15	9.3e-77	1	1
ENSPREP00000006514	CPSF_A	PF03178.15	5.9e-61	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000006600	-	3144	-	ENSPREP00000006514	1047 (aa)	-	-
ENSPRET00000006562	-	3903	XM_008405646	ENSPREP00000006475	1102 (aa)	XP_008403868	-

Gene Model

Click here to download ENSPREG00000004440's gene model file

Pathways

Pathway ID	Pathway Name	Source
pret03420	Nucleotide excision repair	KEGG
pret04120	Ubiquitin mediated proteolysis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000004440's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000004440	ddb1	98	91.256	ENSG00000167986	DDB1	100	96.575	Homo_sapiens
ENSPREG00000004440	ddb1	98	98.233	ENSAPOG00000005036	ddb1	99	98.469	Acanthochromis_polyacanthus
ENSPREG00000004440	ddb1	98	91.349	ENSAMEG00000016518	DDB1	94	91.349	Ailuropoda_melanoleuca
ENSPREG00000004440	ddb1	89	98.571	ENSACIG00000020624	ddb1	99	98.571	Amphilophus_citrinellus
ENSPREG00000004440	ddb1	98	98.140	ENSAOCG00000003066	ddb1	94	98.140	Amphiprion_ocellaris
ENSPREG00000004440	ddb1	98	98.140	ENSAPEG00000000092	ddb1	99	98.417	Amphiprion_percula
ENSPREG00000004440	ddb1	99	97.974	ENSATEG00000020571	ddb1	98	97.974	Anabas_testudineus
ENSPREG00000004440	ddb1	96	90.085	ENSAPLG00000007174	DDB1	93	90.085	Anas_platyrhynchos
ENSPREG00000004440	ddb1	98	90.419	ENSACAG00000017758	DDB1	94	90.419	Anolis_carolinensis
ENSPREG00000004440	ddb1	98	91.256	ENSANAG00000021878	DDB1	94	91.256	Aotus_nancymaae
ENSPREG00000004440	ddb1	98	98.047	ENSACLG00000012401	ddb1	99	97.763	Astatotilapia_calliptera
ENSPREG00000004440	ddb1	59	30.464	ENSAMXG00000008485	cpsf1	52	30.464	Astyanax_mexicanus
ENSPREG00000004440	ddb1	98	91.256	ENSBTAG00000021569	DDB1	88	91.256	Bos_taurus
ENSPREG00000004440	ddb1	97	37.296	WBGene00010890	ddb-1	94	37.296	Caenorhabditis_elegans
ENSPREG00000004440	ddb1	98	91.256	ENSCJAG00000019319	DDB1	94	91.256	Callithrix_jacchus
ENSPREG00000004440	ddb1	98	91.628	ENSCAFG00000016264	DDB1	99	91.628	Canis_familiaris
ENSPREG00000004440	ddb1	98	91.628	ENSCAFG00020012722	DDB1	99	91.628	Canis_lupus_dingo
ENSPREG00000004440	ddb1	98	91.256	ENSCHIG00000014969	DDB1	94	91.256	Capra_hircus
ENSPREG00000004440	ddb1	98	90.884	ENSTSYG00000008027	DDB1	94	90.884	Carlito_syrichta
ENSPREG00000004440	ddb1	96	91.082	ENSCAPG00000010786	DDB1	94	91.082	Cavia_aperea
ENSPREG00000004440	ddb1	98	91.070	ENSCPOG00000009956	DDB1	94	91.070	Cavia_porcellus
ENSPREG00000004440	ddb1	98	91.256	ENSCCAG00000035883	DDB1	94	91.256	Cebus_capucinus
ENSPREG00000004440	ddb1	97	89.362	ENSCATG00000044495	DDB1	94	89.362	Cercocebus_atys
ENSPREG00000004440	ddb1	98	91.163	ENSCLAG00000004126	DDB1	94	91.163	Chinchilla_lanigera
ENSPREG00000004440	ddb1	98	91.256	ENSCSAG00000006392	DDB1	94	91.256	Chlorocebus_sabaeus
ENSPREG00000004440	ddb1	87	83.673	ENSCHOG00000011377	DDB1	86	83.673	Choloepus_hoffmanni
ENSPREG00000004440	ddb1	98	90.791	ENSCPBG00000017728	DDB1	94	90.791	Chrysemys_picta_bellii
ENSPREG00000004440	ddb1	98	61.270	ENSCING00000007437	-	94	61.270	Ciona_intestinalis
ENSPREG00000004440	ddb1	93	59.904	ENSCSAVG00000004783	-	100	60.285	Ciona_savignyi
ENSPREG00000004440	ddb1	98	91.256	ENSCANG00000019948	DDB1	94	91.256	Colobus_angolensis_palliatus
ENSPREG00000004440	ddb1	98	91.349	ENSCGRG00001016599	Ddb1	98	90.485	Cricetulus_griseus_chok1gshd
ENSPREG00000004440	ddb1	98	91.349	ENSCGRG00000013427	Ddb1	94	91.349	Cricetulus_griseus_crigri
ENSPREG00000004440	ddb1	96	97.832	ENSCSEG00000012499	ddb1	99	96.154	Cynoglossus_semilaevis
ENSPREG00000004440	ddb1	97	98.790	ENSCVAG00000019531	ddb1	99	98.790	Cyprinodon_variegatus
ENSPREG00000004440	ddb1	97	91.978	ENSDARG00000074431	ddb1	94	91.978	Danio_rerio
ENSPREG00000004440	ddb1	98	91.628	ENSDNOG00000014884	DDB1	97	91.628	Dasypus_novemcinctus
ENSPREG00000004440	ddb1	81	95.455	ENSDORG00000000127	Ddb1	93	95.455	Dipodomys_ordii
ENSPREG00000004440	ddb1	97	66.216	FBgn0260962	pic	90	66.216	Drosophila_melanogaster
ENSPREG00000004440	ddb1	67	95.276	ENSETEG00000001053	-	64	95.276	Echinops_telfairi
ENSPREG00000004440	ddb1	81	84.477	ENSEBUG00000014593	ddb1	97	84.477	Eptatretus_burgeri
ENSPREG00000004440	ddb1	98	91.349	ENSEASG00005008184	DDB1	94	91.349	Equus_asinus_asinus
ENSPREG00000004440	ddb1	98	91.349	ENSECAG00000012136	DDB1	94	91.349	Equus_caballus
ENSPREG00000004440	ddb1	88	87.037	ENSEEUG00000003194	DDB1	85	87.037	Erinaceus_europaeus
ENSPREG00000004440	ddb1	98	96.558	ENSELUG00000023868	ddb1	94	96.558	Esox_lucius
ENSPREG00000004440	ddb1	98	91.349	ENSFCAG00000029716	DDB1	94	91.349	Felis_catus
ENSPREG00000004440	ddb1	98	90.698	ENSFALG00000011981	DDB1	94	90.698	Ficedula_albicollis
ENSPREG00000004440	ddb1	98	91.163	ENSFDAG00000005128	DDB1	94	91.163	Fukomys_damarensis
ENSPREG00000004440	ddb1	97	92.702	ENSFHEG00000022133	ddb1	93	98.913	Fundulus_heteroclitus
ENSPREG00000004440	ddb1	82	98.328	ENSGMOG00000019386	ddb1	94	98.328	Gadus_morhua
ENSPREG00000004440	ddb1	98	90.698	ENSGALG00000042333	DDB1	94	90.698	Gallus_gallus
ENSPREG00000004440	ddb1	97	99.814	ENSGAFG00000013142	ddb1	99	99.814	Gambusia_affinis
ENSPREG00000004440	ddb1	97	98.131	ENSGACG00000017182	ddb1	98	98.131	Gasterosteus_aculeatus
ENSPREG00000004440	ddb1	92	90.579	ENSGAGG00000014124	DDB1	94	90.579	Gopherus_agassizii
ENSPREG00000004440	ddb1	98	91.256	ENSGGOG00000004052	DDB1	94	91.256	Gorilla_gorilla
ENSPREG00000004440	ddb1	98	98.047	ENSHBUG00000008873	ddb1	94	98.047	Haplochromis_burtoni
ENSPREG00000004440	ddb1	98	91.163	ENSHGLG00000018430	DDB1	94	91.163	Heterocephalus_glaber_female
ENSPREG00000004440	ddb1	98	90.140	ENSHGLG00100014475	DDB1	94	90.140	Heterocephalus_glaber_male
ENSPREG00000004440	ddb1	98	97.410	ENSHCOG00000018670	ddb1	99	97.410	Hippocampus_comes
ENSPREG00000004440	ddb1	98	95.349	ENSIPUG00000005612	DDB1	98	95.624	Ictalurus_punctatus
ENSPREG00000004440	ddb1	98	91.256	ENSSTOG00000007552	DDB1	94	91.256	Ictidomys_tridecemlineatus
ENSPREG00000004440	ddb1	98	91.256	ENSJJAG00000017769	Ddb1	94	91.256	Jaculus_jaculus
ENSPREG00000004440	ddb1	97	98.883	ENSKMAG00000002315	ddb1	99	98.883	Kryptolebias_marmoratus
ENSPREG00000004440	ddb1	87	98.647	ENSLBEG00000017065	ddb1	99	98.647	Labrus_bergylta
ENSPREG00000004440	ddb1	97	91.053	ENSLACG00000017611	DDB1	97	90.892	Latimeria_chalumnae
ENSPREG00000004440	ddb1	89	87.266	ENSLOCG00000000012	ddb1	93	87.266	Lepisosteus_oculatus
ENSPREG00000004440	ddb1	98	91.163	ENSLAFG00000011513	DDB1	94	91.163	Loxodonta_africana
ENSPREG00000004440	ddb1	98	91.256	ENSMFAG00000042035	DDB1	94	91.256	Macaca_fascicularis
ENSPREG00000004440	ddb1	59	30.065	ENSMMUG00000007380	CPSF1	56	30.065	Macaca_mulatta
ENSPREG00000004440	ddb1	98	91.256	ENSMMUG00000002691	DDB1	100	90.789	Macaca_mulatta
ENSPREG00000004440	ddb1	98	91.256	ENSMNEG00000031559	DDB1	94	91.256	Macaca_nemestrina
ENSPREG00000004440	ddb1	98	91.256	ENSMLEG00000044136	DDB1	99	88.829	Mandrillus_leucophaeus
ENSPREG00000004440	ddb1	98	98.605	ENSMAMG00000014372	ddb1	94	98.605	Mastacembelus_armatus
ENSPREG00000004440	ddb1	98	97.953	ENSMZEG00005013835	ddb1	94	97.953	Maylandia_zebra
ENSPREG00000004440	ddb1	91	90.258	ENSMGAG00000004990	DDB1	94	90.258	Meleagris_gallopavo
ENSPREG00000004440	ddb1	98	91.349	ENSMAUG00000012926	Ddb1	94	91.349	Mesocricetus_auratus
ENSPREG00000004440	ddb1	98	91.442	ENSMICG00000013703	DDB1	94	91.442	Microcebus_murinus
ENSPREG00000004440	ddb1	98	91.256	ENSMOCG00000020499	Ddb1	94	91.256	Microtus_ochrogaster
ENSPREG00000004440	ddb1	89	98.878	ENSMMOG00000001758	ddb1	99	98.878	Mola_mola
ENSPREG00000004440	ddb1	98	83.010	ENSMODG00000020353	DDB1	94	83.010	Monodelphis_domestica
ENSPREG00000004440	ddb1	98	98.419	ENSMALG00000014071	ddb1	94	98.419	Monopterus_albus
ENSPREG00000004440	ddb1	98	91.349	MGP_CAROLIEiJ_G0022695	Ddb1	94	91.349	Mus_caroli
ENSPREG00000004440	ddb1	98	91.442	ENSMUSG00000024740	Ddb1	94	91.442	Mus_musculus
ENSPREG00000004440	ddb1	98	91.349	MGP_PahariEiJ_G0014189	Ddb1	94	91.349	Mus_pahari
ENSPREG00000004440	ddb1	98	91.442	MGP_SPRETEiJ_G0023609	Ddb1	94	91.442	Mus_spretus
ENSPREG00000004440	ddb1	98	88.186	ENSMPUG00000014200	DDB1	94	88.186	Mustela_putorius_furo
ENSPREG00000004440	ddb1	98	91.442	ENSMLUG00000013232	DDB1	94	91.442	Myotis_lucifugus
ENSPREG00000004440	ddb1	98	91.256	ENSNGAG00000009384	Ddb1	94	91.256	Nannospalax_galili
ENSPREG00000004440	ddb1	98	98.140	ENSNBRG00000019581	ddb1	94	98.140	Neolamprologus_brichardi
ENSPREG00000004440	ddb1	97	88.807	ENSNLEG00000002022	DDB1	94	88.807	Nomascus_leucogenys
ENSPREG00000004440	ddb1	92	95.434	ENSMEUG00000001099	DDB1	87	95.434	Notamacropus_eugenii
ENSPREG00000004440	ddb1	88	82.091	ENSOPRG00000008254	DDB1	85	82.091	Ochotona_princeps
ENSPREG00000004440	ddb1	98	91.256	ENSODEG00000002419	DDB1	94	91.256	Octodon_degus
ENSPREG00000004440	ddb1	98	98.140	ENSONIG00000005804	ddb1	94	98.140	Oreochromis_niloticus
ENSPREG00000004440	ddb1	88	90.693	ENSOANG00000004897	DDB1	94	90.693	Ornithorhynchus_anatinus
ENSPREG00000004440	ddb1	98	91.349	ENSOCUG00000001667	DDB1	94	91.349	Oryctolagus_cuniculus
ENSPREG00000004440	ddb1	98	97.953	ENSORLG00000001399	ddb1	98	97.887	Oryzias_latipes
ENSPREG00000004440	ddb1	98	97.860	ENSORLG00020001277	ddb1	96	97.860	Oryzias_latipes_hni
ENSPREG00000004440	ddb1	98	97.953	ENSORLG00015002080	ddb1	99	97.953	Oryzias_latipes_hsok
ENSPREG00000004440	ddb1	97	98.138	ENSOMEG00000006181	ddb1	97	98.138	Oryzias_melastigma
ENSPREG00000004440	ddb1	98	91.442	ENSOGAG00000016103	DDB1	94	91.442	Otolemur_garnettii
ENSPREG00000004440	ddb1	98	91.256	ENSOARG00000011716	DDB1	93	91.256	Ovis_aries
ENSPREG00000004440	ddb1	98	91.256	ENSPPAG00000035343	DDB1	94	91.256	Pan_paniscus
ENSPREG00000004440	ddb1	98	91.349	ENSPPRG00000013300	DDB1	94	91.349	Panthera_pardus
ENSPREG00000004440	ddb1	96	91.366	ENSPTIG00000006909	DDB1	92	91.366	Panthera_tigris_altaica
ENSPREG00000004440	ddb1	98	91.256	ENSPTRG00000003737	DDB1	94	91.256	Pan_troglodytes
ENSPREG00000004440	ddb1	98	91.256	ENSPANG00000000242	DDB1	94	91.256	Papio_anubis
ENSPREG00000004440	ddb1	99	94.166	ENSPKIG00000019213	ddb1	96	94.166	Paramormyrops_kingsleyae
ENSPREG00000004440	ddb1	96	90.179	ENSPSIG00000013275	DDB1	94	90.179	Pelodiscus_sinensis
ENSPREG00000004440	ddb1	89	98.469	ENSPMGG00000021179	ddb1	99	98.469	Periophthalmus_magnuspinnatus
ENSPREG00000004440	ddb1	98	91.349	ENSPEMG00000012241	Ddb1	94	91.349	Peromyscus_maniculatus_bairdii
ENSPREG00000004440	ddb1	92	87.033	ENSPMAG00000008479	ddb1	100	87.033	Petromyzon_marinus
ENSPREG00000004440	ddb1	98	91.349	ENSPCIG00000002643	DDB1	94	91.349	Phascolarctos_cinereus
ENSPREG00000004440	ddb1	97	100.000	ENSPFOG00000002768	ddb1	94	100.000	Poecilia_formosa
ENSPREG00000004440	ddb1	98	99.908	ENSPLAG00000017227	ddb1	99	99.908	Poecilia_latipinna
ENSPREG00000004440	ddb1	98	99.908	ENSPMEG00000011398	ddb1	99	99.908	Poecilia_mexicana
ENSPREG00000004440	ddb1	98	87.094	ENSPPYG00000003193	DDB1	94	87.094	Pongo_abelii
ENSPREG00000004440	ddb1	82	88.926	ENSPCAG00000011040	DDB1	79	88.926	Procavia_capensis
ENSPREG00000004440	ddb1	98	90.842	ENSPCOG00000015176	DDB1	95	90.842	Propithecus_coquereli
ENSPREG00000004440	ddb1	98	91.163	ENSPVAG00000003847	DDB1	94	91.163	Pteropus_vampyrus
ENSPREG00000004440	ddb1	98	96.104	ENSPNAG00000006635	ddb1	97	96.104	Pygocentrus_nattereri
ENSPREG00000004440	ddb1	98	91.442	ENSRNOG00000020715	Ddb1	94	91.442	Rattus_norvegicus
ENSPREG00000004440	ddb1	59	30.065	ENSRBIG00000044907	CPSF1	56	30.065	Rhinopithecus_bieti
ENSPREG00000004440	ddb1	98	91.256	ENSRBIG00000033611	DDB1	95	91.256	Rhinopithecus_bieti
ENSPREG00000004440	ddb1	59	30.065	ENSRROG00000044861	CPSF1	56	30.065	Rhinopithecus_roxellana
ENSPREG00000004440	ddb1	98	91.256	ENSRROG00000041407	DDB1	94	91.256	Rhinopithecus_roxellana
ENSPREG00000004440	ddb1	98	91.349	ENSSBOG00000019775	DDB1	94	91.349	Saimiri_boliviensis_boliviensis
ENSPREG00000004440	ddb1	91	88.856	ENSSHAG00000011600	DDB1	94	88.856	Sarcophilus_harrisii
ENSPREG00000004440	ddb1	98	96.093	ENSSFOG00015011151	ddb1	97	96.093	Scleropages_formosus
ENSPREG00000004440	ddb1	98	98.047	ENSSMAG00000009495	ddb1	94	98.047	Scophthalmus_maximus
ENSPREG00000004440	ddb1	98	98.605	ENSSDUG00000004642	ddb1	94	98.605	Seriola_dumerili
ENSPREG00000004440	ddb1	98	98.605	ENSSLDG00000015804	ddb1	94	98.605	Seriola_lalandi_dorsalis
ENSPREG00000004440	ddb1	74	94.340	ENSSARG00000003290	-	71	94.340	Sorex_araneus
ENSPREG00000004440	ddb1	98	90.698	ENSSPUG00000019338	DDB1	94	90.698	Sphenodon_punctatus
ENSPREG00000004440	ddb1	98	98.698	ENSSPAG00000009888	ddb1	99	98.698	Stegastes_partitus
ENSPREG00000004440	ddb1	97	91.020	ENSSSCG00000013094	DDB1	94	91.020	Sus_scrofa
ENSPREG00000004440	ddb1	97	90.994	ENSTGUG00000006414	DDB1	94	90.994	Taeniopygia_guttata
ENSPREG00000004440	ddb1	97	97.393	ENSTRUG00000016682	ddb1	99	97.393	Takifugu_rubripes
ENSPREG00000004440	ddb1	85	91.676	ENSTNIG00000009565	ddb1	93	91.676	Tetraodon_nigroviridis
ENSPREG00000004440	ddb1	90	84.801	ENSTTRG00000011055	DDB1	84	91.810	Tursiops_truncatus
ENSPREG00000004440	ddb1	98	91.628	ENSUAMG00000017793	DDB1	93	91.628	Ursus_americanus
ENSPREG00000004440	ddb1	98	91.628	ENSUMAG00000011788	DDB1	98	91.628	Ursus_maritimus
ENSPREG00000004440	ddb1	83	98.246	ENSVPAG00000007963	DDB1	78	98.246	Vicugna_pacos
ENSPREG00000004440	ddb1	98	91.349	ENSVVUG00000004987	DDB1	94	91.349	Vulpes_vulpes
ENSPREG00000004440	ddb1	98	88.415	ENSXETG00000008820	ddb1	94	88.415	Xenopus_tropicalis
ENSPREG00000004440	ddb1	89	99.796	ENSXCOG00000013956	ddb1	99	99.796	Xiphophorus_couchianus
ENSPREG00000004440	ddb1	97	99.814	ENSXMAG00000000022	ddb1	99	99.814	Xiphophorus_maculatus