EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSPREG00000004482 (Gene tree)
Gene ID
103459943
Gene Symbol
CPSF3 (1 of many)
Alias
CPSF-73|CPSF73|YSH1
Full Name
cleavage and polyadenylation specificity factor subunit 3
Gene Type
protein_coding
Species
Poecilia_reticulata
Status
putative
Strand
Plus strand
Length
8200 bases
Position
chrKK215285.1:277124-285323
Accession
103459943
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSPREP00000006485CPSF73-100_CPF11718.81.4e-3012
ENSPREP00000006485CPSF73-100_CPF11718.81.4e-3022
ENSPREP00000006485Beta-CaspPF10996.88.9e-3411
ENSPREP00000006485Lactamase_BPF00753.279.2e-1911
ENSPREP00000006485RMMBLPF07521.122.1e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSPRET00000006571CPSF3 (1 of many)-2011962XM_008401884ENSPREP00000006485653 (aa)XP_008400106-
Gene Model
Click here to download ENSPREG00000004482's gene model file
Pathways
Pathway IDPathway NameSource
pret03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000004482's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSPREG00000004482CPSF39079.647ENSPREG00000014875cpsf310074.161
ENSPREG00000004482CPSF37336.810ENSPREG00000021516ints118136.810
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSPREG00000004482CPSF39882.474ENSG00000119203CPSF310099.265Homo_sapiens
ENSPREG00000004482CPSF37898.625ENSAPOG00000012241CPSF39198.625Acanthochromis_polyacanthus
ENSPREG00000004482CPSF310082.899ENSAPOG00000022087cpsf310082.899Acanthochromis_polyacanthus
ENSPREG00000004482CPSF39882.916ENSAMEG00000008493CPSF39982.916Ailuropoda_melanoleuca
ENSPREG00000004482CPSF39185.737ENSACIG00000023663CPSF310079.595Amphilophus_citrinellus
ENSPREG00000004482CPSF39078.855ENSACIG00000009846cpsf310073.478Amphilophus_citrinellus
ENSPREG00000004482CPSF310083.841ENSAOCG00000022056cpsf310083.841Amphiprion_ocellaris
ENSPREG00000004482CPSF310087.971ENSAOCG00000010077CPSF310087.971Amphiprion_ocellaris
ENSPREG00000004482CPSF310083.043ENSAPEG00000019526cpsf310083.043Amphiprion_percula
ENSPREG00000004482CPSF310087.971ENSAPEG00000021167CPSF310087.971Amphiprion_percula
ENSPREG00000004482CPSF310085.023ENSATEG00000014525CPSF310085.023Anabas_testudineus
ENSPREG00000004482CPSF39982.583ENSATEG00000003959cpsf39982.583Anabas_testudineus
ENSPREG00000004482CPSF39782.687ENSAPLG00000006941CPSF39882.687Anas_platyrhynchos
ENSPREG00000004482CPSF39180.063ENSACAG00000001759CPSF39980.063Anolis_carolinensis
ENSPREG00000004482CPSF39880.804ENSANAG00000031254CPSF39981.184Aotus_nancymaae
ENSPREG00000004482CPSF310079.469ENSACLG00000014484cpsf39982.432Astatotilapia_calliptera
ENSPREG00000004482CPSF39185.737ENSACLG00000018846CPSF310079.450Astatotilapia_calliptera
ENSPREG00000004482CPSF310083.333ENSAMXG00000004786cpsf310083.333Astyanax_mexicanus
ENSPREG00000004482CPSF39882.769ENSBTAG00000019735CPSF39982.769Bos_taurus
ENSPREG00000004482CPSF38164.030WBGene00013460cpsf-37564.030Caenorhabditis_elegans
ENSPREG00000004482CPSF39882.474ENSCJAG00000006276CPSF39982.474Callithrix_jacchus
ENSPREG00000004482CPSF39883.211ENSCAFG00000003375CPSF39583.211Canis_familiaris
ENSPREG00000004482CPSF38984.740ENSCAFG00020026799CPSF39984.740Canis_lupus_dingo
ENSPREG00000004482CPSF39882.769ENSCHIG00000013973CPSF39982.769Capra_hircus
ENSPREG00000004482CPSF39882.474ENSTSYG00000002967CPSF39982.474Carlito_syrichta
ENSPREG00000004482CPSF39682.556ENSCAPG00000013851CPSF39982.556Cavia_aperea
ENSPREG00000004482CPSF39883.063ENSCPOG00000011299CPSF39983.063Cavia_porcellus
ENSPREG00000004482CPSF39882.327ENSCCAG00000036730CPSF39982.327Cebus_capucinus
ENSPREG00000004482CPSF39884.592ENSCATG00000014770CPSF39495.208Cercocebus_atys
ENSPREG00000004482CPSF39883.063ENSCLAG00000002727CPSF39983.063Chinchilla_lanigera
ENSPREG00000004482CPSF39874.521ENSCSAG00000007125CPSF39974.521Chlorocebus_sabaeus
ENSPREG00000004482CPSF385100.000ENSCHOG00000000180CPSF38559.930Choloepus_hoffmanni
ENSPREG00000004482CPSF39982.874ENSCPBG00000014074CPSF39982.874Chrysemys_picta_bellii
ENSPREG00000004482CPSF39865.396ENSCING00000007214-9765.396Ciona_intestinalis
ENSPREG00000004482CPSF39876.807ENSCANG00000034435CPSF39976.807Colobus_angolensis_palliatus
ENSPREG00000004482CPSF39882.500ENSCGRG00001013134Cpsf39982.500Cricetulus_griseus_chok1gshd
ENSPREG00000004482CPSF39882.500ENSCGRG00000018319Cpsf39982.500Cricetulus_griseus_crigri
ENSPREG00000004482CPSF310084.949ENSCSEG00000002021CPSF310085.008Cynoglossus_semilaevis
ENSPREG00000004482CPSF310088.551ENSCVAG00000015067CPSF310088.551Cyprinodon_variegatus
ENSPREG00000004482CPSF310083.768ENSDARG00000027649cpsf310083.768Danio_rerio
ENSPREG00000004482CPSF39882.059ENSDNOG00000008940CPSF39582.059Dasypus_novemcinctus
ENSPREG00000004482CPSF39383.179ENSDORG00000014263Cpsf39983.179Dipodomys_ordii
ENSPREG00000004482CPSF39964.483FBgn0261065Cpsf739964.483Drosophila_melanogaster
ENSPREG00000004482CPSF39371.451ENSETEG00000003893CPSF39971.451Echinops_telfairi
ENSPREG00000004482CPSF39971.751ENSEBUG00000009018cpsf39972.113Eptatretus_burgeri
ENSPREG00000004482CPSF39882.916ENSEASG00005003970CPSF39982.916Equus_asinus_asinus
ENSPREG00000004482CPSF39882.916ENSECAG00000019911CPSF39982.916Equus_caballus
ENSPREG00000004482CPSF39867.206ENSEEUG00000015422CPSF39967.206Erinaceus_europaeus
ENSPREG00000004482CPSF39984.012ENSELUG00000013775cpsf39984.012Esox_lucius
ENSPREG00000004482CPSF39882.769ENSFCAG00000007852CPSF39982.769Felis_catus
ENSPREG00000004482CPSF39382.326ENSFALG00000006572CPSF39982.326Ficedula_albicollis
ENSPREG00000004482CPSF39882.180ENSFDAG00000006317CPSF39982.180Fukomys_damarensis
ENSPREG00000004482CPSF35667.805ENSFHEG00000012186CPSF310067.805Fundulus_heteroclitus
ENSPREG00000004482CPSF310083.508ENSFHEG00000014774cpsf310083.508Fundulus_heteroclitus
ENSPREG00000004482CPSF310082.319ENSGMOG00000003157cpsf310082.319Gadus_morhua
ENSPREG00000004482CPSF39982.387ENSGALG00000016424CPSF39982.387Gallus_gallus
ENSPREG00000004482CPSF310090.870ENSGAFG00000008016CPSF310090.870Gambusia_affinis
ENSPREG00000004482CPSF39079.073ENSGAFG00000019449cpsf310073.654Gambusia_affinis
ENSPREG00000004482CPSF36676.445ENSGAGG00000025583CPSF39376.445Gopherus_agassizii
ENSPREG00000004482CPSF39880.403ENSGGOG00000001757CPSF39198.065Gorilla_gorilla
ENSPREG00000004482CPSF35677.114ENSHBUG00000014332CPSF310077.114Haplochromis_burtoni
ENSPREG00000004482CPSF310082.464ENSHBUG00000001188cpsf310082.464Haplochromis_burtoni
ENSPREG00000004482CPSF39882.474ENSHGLG00000000666CPSF39882.474Heterocephalus_glaber_female
ENSPREG00000004482CPSF39882.474ENSHGLG00100007765CPSF39882.474Heterocephalus_glaber_male
ENSPREG00000004482CPSF39986.047ENSHCOG00000015957CPSF39986.047Hippocampus_comes
ENSPREG00000004482CPSF39981.686ENSHCOG00000007251cpsf39981.686Hippocampus_comes
ENSPREG00000004482CPSF310082.609ENSIPUG00000023488cpsf310082.609Ictalurus_punctatus
ENSPREG00000004482CPSF39882.327ENSSTOG00000004476CPSF39982.327Ictidomys_tridecemlineatus
ENSPREG00000004482CPSF39882.032ENSJJAG00000023415Cpsf39982.032Jaculus_jaculus
ENSPREG00000004482CPSF310081.159ENSKMAG00000002806cpsf310081.159Kryptolebias_marmoratus
ENSPREG00000004482CPSF310087.971ENSKMAG00000007317CPSF310087.971Kryptolebias_marmoratus
ENSPREG00000004482CPSF39977.695ENSLBEG00000020569cpsf39677.695Labrus_bergylta
ENSPREG00000004482CPSF35172.207ENSLBEG00000015018-9972.207Labrus_bergylta
ENSPREG00000004482CPSF39587.823ENSLBEG00000013492CPSF39987.823Labrus_bergylta
ENSPREG00000004482CPSF310075.398ENSLACG00000008308CPSF310075.398Latimeria_chalumnae
ENSPREG00000004482CPSF310083.694ENSLOCG00000016823cpsf310083.694Lepisosteus_oculatus
ENSPREG00000004482CPSF39881.858ENSLAFG00000009467CPSF39981.858Loxodonta_africana
ENSPREG00000004482CPSF39882.327ENSMFAG00000001339CPSF39495.208Macaca_fascicularis
ENSPREG00000004482CPSF38195.301ENSMMUG00000018038CPSF39295.208Macaca_mulatta
ENSPREG00000004482CPSF38997.600ENSMNEG00000039447CPSF39997.600Macaca_nemestrina
ENSPREG00000004482CPSF39882.474ENSMLEG00000026825CPSF39297.854Mandrillus_leucophaeus
ENSPREG00000004482CPSF310081.884ENSMAMG00000003076cpsf310081.884Mastacembelus_armatus
ENSPREG00000004482CPSF39185.623ENSMAMG00000008835CPSF310079.592Mastacembelus_armatus
ENSPREG00000004482CPSF310082.464ENSMZEG00005014358cpsf310082.464Maylandia_zebra
ENSPREG00000004482CPSF310087.536ENSMZEG00005006258CPSF310087.536Maylandia_zebra
ENSPREG00000004482CPSF39682.556ENSMGAG00000013995CPSF39982.556Meleagris_gallopavo
ENSPREG00000004482CPSF35169.251ENSMAUG00000000166Cpsf39969.251Mesocricetus_auratus
ENSPREG00000004482CPSF39882.905ENSMICG00000002363CPSF39982.905Microcebus_murinus
ENSPREG00000004482CPSF39881.860ENSMOCG00000020067Cpsf39981.860Microtus_ochrogaster
ENSPREG00000004482CPSF39382.109ENSMMOG00000018212CPSF39882.109Mola_mola
ENSPREG00000004482CPSF37971.726ENSMMOG00000011923CPSF38578.571Mola_mola
ENSPREG00000004482CPSF39881.514ENSMODG00000014703CPSF39981.514Monodelphis_domestica
ENSPREG00000004482CPSF39182.371ENSMALG00000011474CPSF310082.371Monopterus_albus
ENSPREG00000004482CPSF310082.899ENSMALG00000016416cpsf310082.899Monopterus_albus
ENSPREG00000004482CPSF39882.500MGP_CAROLIEiJ_G0017640Cpsf39982.500Mus_caroli
ENSPREG00000004482CPSF39882.500ENSMUSG00000054309Cpsf39697.881Mus_musculus
ENSPREG00000004482CPSF39882.500MGP_PahariEiJ_G0029397Cpsf39982.500Mus_pahari
ENSPREG00000004482CPSF39882.500MGP_SPRETEiJ_G0018481Cpsf39982.500Mus_spretus
ENSPREG00000004482CPSF39882.769ENSMPUG00000013213CPSF39982.769Mustela_putorius_furo
ENSPREG00000004482CPSF39882.647ENSMLUG00000010636CPSF39982.647Myotis_lucifugus
ENSPREG00000004482CPSF39882.500ENSNGAG00000019836Cpsf39982.500Nannospalax_galili
ENSPREG00000004482CPSF310082.029ENSNBRG00000004770cpsf310082.029Neolamprologus_brichardi
ENSPREG00000004482CPSF39185.737ENSNBRG00000010525CPSF310079.450Neolamprologus_brichardi
ENSPREG00000004482CPSF39882.327ENSNLEG00000013359CPSF39198.065Nomascus_leucogenys
ENSPREG00000004482CPSF39852.135ENSMEUG00000013117-9952.135Notamacropus_eugenii
ENSPREG00000004482CPSF39873.932ENSOPRG00000008902CPSF39973.932Ochotona_princeps
ENSPREG00000004482CPSF39882.769ENSODEG00000003129CPSF39982.769Octodon_degus
ENSPREG00000004482CPSF310082.464ENSONIG00000018812cpsf310082.464Oreochromis_niloticus
ENSPREG00000004482CPSF38079.537ENSOANG00000008577CPSF39979.537Ornithorhynchus_anatinus
ENSPREG00000004482CPSF39883.063ENSOCUG00000003728CPSF39983.063Oryctolagus_cuniculus
ENSPREG00000004482CPSF310082.029ENSORLG00000018854cpsf310082.029Oryzias_latipes
ENSPREG00000004482CPSF310081.884ENSORLG00020013331cpsf310081.884Oryzias_latipes_hni
ENSPREG00000004482CPSF310082.029ENSORLG00015011017cpsf310082.029Oryzias_latipes_hsok
ENSPREG00000004482CPSF310082.464ENSOMEG00000010647cpsf39682.464Oryzias_melastigma
ENSPREG00000004482CPSF39872.206ENSOGAG00000001680CPSF39972.206Otolemur_garnettii
ENSPREG00000004482CPSF39882.769ENSOARG00000015073CPSF39982.769Ovis_aries
ENSPREG00000004482CPSF39882.474ENSPPAG00000042457CPSF39198.065Pan_paniscus
ENSPREG00000004482CPSF39882.647ENSPPRG00000016790CPSF39982.769Panthera_pardus
ENSPREG00000004482CPSF39882.891ENSPTIG00000003920CPSF39982.891Panthera_tigris_altaica
ENSPREG00000004482CPSF39882.474ENSPTRG00000011638CPSF39198.065Pan_troglodytes
ENSPREG00000004482CPSF39882.327ENSPANG00000016798CPSF39495.208Papio_anubis
ENSPREG00000004482CPSF310084.493ENSPKIG00000023646cpsf310084.493Paramormyrops_kingsleyae
ENSPREG00000004482CPSF39881.618ENSPSIG00000016144CPSF39981.618Pelodiscus_sinensis
ENSPREG00000004482CPSF35677.307ENSPMGG00000015311CPSF310077.307Periophthalmus_magnuspinnatus
ENSPREG00000004482CPSF39080.541ENSPMGG00000006141-9974.387Periophthalmus_magnuspinnatus
ENSPREG00000004482CPSF39883.063ENSPEMG00000017668Cpsf39983.063Peromyscus_maniculatus_bairdii
ENSPREG00000004482CPSF38389.908ENSPMAG00000004841cpsf310089.908Petromyzon_marinus
ENSPREG00000004482CPSF39682.583ENSPCIG00000009823CPSF39882.975Phascolarctos_cinereus
ENSPREG00000004482CPSF310081.713ENSPFOG00000015922cpsf310081.713Poecilia_formosa
ENSPREG00000004482CPSF310090.580ENSPFOG00000010418-10090.580Poecilia_formosa
ENSPREG00000004482CPSF35684.198ENSPLAG00000021300-10084.198Poecilia_latipinna
ENSPREG00000004482CPSF310081.713ENSPLAG00000000882cpsf310081.713Poecilia_latipinna
ENSPREG00000004482CPSF310081.858ENSPMEG00000018309cpsf310081.858Poecilia_mexicana
ENSPREG00000004482CPSF39878.498ENSPPYG00000012666CPSF39978.498Pongo_abelii
ENSPREG00000004482CPSF38965.913ENSPCAG00000015042CPSF38965.913Procavia_capensis
ENSPREG00000004482CPSF38689.964ENSPCOG00000023016CPSF39789.964Propithecus_coquereli
ENSPREG00000004482CPSF39882.622ENSPVAG00000005324CPSF39982.622Pteropus_vampyrus
ENSPREG00000004482CPSF37497.095ENSPNYG00000021047CPSF38187.823Pundamilia_nyererei
ENSPREG00000004482CPSF310082.464ENSPNYG00000004405cpsf310082.464Pundamilia_nyererei
ENSPREG00000004482CPSF310083.188ENSPNAG00000023060cpsf310083.188Pygocentrus_nattereri
ENSPREG00000004482CPSF39882.622ENSRNOG00000052418Cpsf39982.622Rattus_norvegicus
ENSPREG00000004482CPSF39877.467ENSRBIG00000041615CPSF39978.140Rhinopithecus_bieti
ENSPREG00000004482CPSF39882.474ENSRROG00000033792CPSF39982.474Rhinopithecus_roxellana
ENSPREG00000004482CPSF38046.459YLR277CYSH17446.459Saccharomyces_cerevisiae
ENSPREG00000004482CPSF39678.625ENSSBOG00000027263CPSF39778.625Saimiri_boliviensis_boliviensis
ENSPREG00000004482CPSF39882.647ENSSHAG00000007024CPSF39982.647Sarcophilus_harrisii
ENSPREG00000004482CPSF310084.058ENSSFOG00015002108cpsf310084.058Scleropages_formosus
ENSPREG00000004482CPSF39587.172ENSSMAG00000020534CPSF39787.172Scophthalmus_maximus
ENSPREG00000004482CPSF310087.681ENSSDUG00000018498CPSF310087.681Seriola_dumerili
ENSPREG00000004482CPSF310082.464ENSSDUG00000002828cpsf39782.464Seriola_dumerili
ENSPREG00000004482CPSF310083.232ENSSLDG00000008469cpsf39783.232Seriola_lalandi_dorsalis
ENSPREG00000004482CPSF310087.681ENSSLDG00000005234CPSF310087.681Seriola_lalandi_dorsalis
ENSPREG00000004482CPSF39484.181ENSSARG00000005186CPSF39084.181Sorex_araneus
ENSPREG00000004482CPSF39680.746ENSSPUG00000015525CPSF39780.746Sphenodon_punctatus
ENSPREG00000004482CPSF310082.754ENSSPAG00000018579cpsf310082.754Stegastes_partitus
ENSPREG00000004482CPSF310087.971ENSSPAG00000002906CPSF310087.971Stegastes_partitus
ENSPREG00000004482CPSF39883.211ENSSSCG00000020799CPSF39983.211Sus_scrofa
ENSPREG00000004482CPSF39982.551ENSTGUG00000013016CPSF39982.551Taeniopygia_guttata
ENSPREG00000004482CPSF39982.003ENSTRUG00000007030cpsf39882.003Takifugu_rubripes
ENSPREG00000004482CPSF35675.266ENSTRUG00000013905CPSF310075.266Takifugu_rubripes
ENSPREG00000004482CPSF38391.989ENSTBEG00000002707CPSF38491.989Tupaia_belangeri
ENSPREG00000004482CPSF38574.939ENSTTRG00000000861CPSF38774.939Tursiops_truncatus
ENSPREG00000004482CPSF39483.664ENSUAMG00000007535CPSF39483.664Ursus_americanus
ENSPREG00000004482CPSF39382.171ENSUMAG00000003676CPSF39982.171Ursus_maritimus
ENSPREG00000004482CPSF39182.677ENSVPAG00000008041CPSF310082.677Vicugna_pacos
ENSPREG00000004482CPSF39882.916ENSVVUG00000002194CPSF39982.916Vulpes_vulpes
ENSPREG00000004482CPSF39981.449ENSXETG00000008263cpsf39981.449Xenopus_tropicalis
ENSPREG00000004482CPSF35182.527ENSXCOG00000000957-8782.527Xiphophorus_couchianus
ENSPREG00000004482CPSF310081.805ENSXCOG00000019695cpsf310081.805Xiphophorus_couchianus
ENSPREG00000004482CPSF310081.594ENSXMAG00000009784cpsf310081.594Xiphophorus_maculatus
ENSPREG00000004482CPSF310090.725ENSXMAG00000027291CPSF310090.725Xiphophorus_maculatus

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