EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSPREG00000005440 (Gene tree)
Gene ID
103456825
Gene Symbol
puf60b
Alias
fe37c05|si:ch211-12p8.2|si:zc12p8.2|wu:fb33e11|wu:fe37c05|zgc:86806
Full Name
poly(U) binding splicing factor 60
Gene Type
protein_coding
Species
Poecilia_reticulata
Status
putative
Strand
Plus strand
Length
13904 bases
Position
chrLG20:21571431-21585334
Accession
103456825
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSPREP00000008284RRM_1PF00076.228.1e-4412
ENSPREP00000008284RRM_1PF00076.228.1e-4422
ENSPREP00000008299RRM_1PF00076.228.9e-4412
ENSPREP00000008299RRM_1PF00076.228.9e-4422
ENSPREP00000008247RRM_1PF00076.221.3e-4312
ENSPREP00000008247RRM_1PF00076.221.3e-4322
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSPRET00000008343-1623XM_008396624ENSPREP00000008247540 (aa)XP_008394846UPI00072E9B70
ENSPRET00000008396-1473-ENSPREP00000008299490 (aa)--
ENSPRET00000008381-1461-ENSPREP00000008284486 (aa)--
Gene Model
Click here to download ENSPREG00000005440's gene model file
Pathways
Pathway IDPathway NameSource
pret03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000005440's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSPREG00000005440puf60b5936.275ENSPREG00000008739u2af2a6838.235
ENSPREG00000005440puf60b5637.255ENSPREG00000013036-6837.255
ENSPREG00000005440puf60b10076.258ENSPREG00000001470afg3l28876.459
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSPREG00000005440puf60b10083.730ENSG00000179950PUF6010082.540Homo_sapiens
ENSPREG00000005440puf60b10095.565ENSAPOG00000001713puf60b10094.259Acanthochromis_polyacanthus
ENSPREG00000005440puf60b9981.331ENSAMEG00000006406PUF609380.222Ailuropoda_melanoleuca
ENSPREG00000005440puf60b10077.823ENSACIG00000003263-9977.823Amphilophus_citrinellus
ENSPREG00000005440puf60b9895.510ENSACIG00000021705puf60b10095.446Amphilophus_citrinellus
ENSPREG00000005440puf60b10095.565ENSAOCG00000005395puf60b10095.066Amphiprion_ocellaris
ENSPREG00000005440puf60b10080.222ENSAOCG00000015558-10080.591Amphiprion_ocellaris
ENSPREG00000005440puf60b10093.145ENSAPEG00000011923puf60b9793.145Amphiprion_percula
ENSPREG00000005440puf60b10078.732ENSAPEG00000001836-9979.675Amphiprion_percula
ENSPREG00000005440puf60b10078.928ENSATEG00000006303-10079.482Anabas_testudineus
ENSPREG00000005440puf60b10095.185ENSATEG00000001730puf60b10095.185Anabas_testudineus
ENSPREG00000005440puf60b9983.734ENSAPLG00000010150PUF6010082.070Anas_platyrhynchos
ENSPREG00000005440puf60b9883.633ENSACAG00000001645PUF609781.365Anolis_carolinensis
ENSPREG00000005440puf60b10083.532ENSANAG00000018626PUF6010081.869Aotus_nancymaae
ENSPREG00000005440puf60b10095.968ENSACLG00000004462puf60b10095.968Astatotilapia_calliptera
ENSPREG00000005440puf60b10080.915ENSAMXG00000041030puf60b10081.909Astyanax_mexicanus
ENSPREG00000005440puf60b10085.629ENSAMXG00000036570puf60a10084.007Astyanax_mexicanus
ENSPREG00000005440puf60b10084.127ENSBTAG00000037493PUF6010081.056Bos_taurus
ENSPREG00000005440puf60b9346.400WBGene00004389rnp-68354.704Caenorhabditis_elegans
ENSPREG00000005440puf60b10083.730ENSCJAG00000021485PUF6010080.692Callithrix_jacchus
ENSPREG00000005440puf60b10083.929ENSCAFG00000001400PUF609282.738Canis_familiaris
ENSPREG00000005440puf60b10083.929ENSCAFG00020018754PUF6010080.874Canis_lupus_dingo
ENSPREG00000005440puf60b9983.364ENSCHIG00000001618PUF608781.701Capra_hircus
ENSPREG00000005440puf60b10082.696ENSTSYG00000011912PUF6010082.243Carlito_syrichta
ENSPREG00000005440puf60b10078.937ENSCPOG00000014613PUF609476.881Cavia_porcellus
ENSPREG00000005440puf60b10083.929ENSCCAG00000007744PUF6010080.874Cebus_capucinus
ENSPREG00000005440puf60b10083.730ENSCATG00000035405PUF6010080.692Cercocebus_atys
ENSPREG00000005440puf60b10083.929ENSCLAG00000009154PUF609381.516Chinchilla_lanigera
ENSPREG00000005440puf60b9883.936ENSCSAG00000008878PUF6010082.056Chlorocebus_sabaeus
ENSPREG00000005440puf60b9883.735ENSCPBG00000005595PUF609981.101Chrysemys_picta_bellii
ENSPREG00000005440puf60b9847.184ENSCING00000008436-9945.704Ciona_intestinalis
ENSPREG00000005440puf60b6361.994ENSCING00000002156-8762.500Ciona_intestinalis
ENSPREG00000005440puf60b9747.826ENSCSAVG00000004765-9746.939Ciona_savignyi
ENSPREG00000005440puf60b9852.529ENSCSAVG00000001385-9952.713Ciona_savignyi
ENSPREG00000005440puf60b8183.623ENSCANG00000041843PUF6010080.734Colobus_angolensis_palliatus
ENSPREG00000005440puf60b10084.127ENSCGRG00001017442Puf609381.701Cricetulus_griseus_chok1gshd
ENSPREG00000005440puf60b9983.364ENSCGRG00000003717Puf609381.701Cricetulus_griseus_crigri
ENSPREG00000005440puf60b10078.088ENSCSEG00000014845-8978.884Cynoglossus_semilaevis
ENSPREG00000005440puf60b9994.805ENSCSEG00000019887puf60b9494.249Cynoglossus_semilaevis
ENSPREG00000005440puf60b9380.128ENSCVAG00000001560-9879.487Cyprinodon_variegatus
ENSPREG00000005440puf60b10096.976ENSCVAG00000009386puf60b10096.976Cyprinodon_variegatus
ENSPREG00000005440puf60b10081.782ENSDARG00000001241puf60b9998.413Danio_rerio
ENSPREG00000005440puf60b10084.029ENSDARG00000032175puf60a9991.925Danio_rerio
ENSPREG00000005440puf60b9771.111ENSDNOG00000043278PUF609068.750Dasypus_novemcinctus
ENSPREG00000005440puf60b10084.127ENSDORG00000004585Puf609581.701Dipodomys_ordii
ENSPREG00000005440puf60b8466.667FBgn0028577hfp7267.843Drosophila_melanogaster
ENSPREG00000005440puf60b10060.174ENSEBUG00000014291puf60b8461.969Eptatretus_burgeri
ENSPREG00000005440puf60b9770.928ENSEBUG00000005470-9464.416Eptatretus_burgeri
ENSPREG00000005440puf60b10083.929ENSEASG00005009695PUF6010080.874Equus_asinus_asinus
ENSPREG00000005440puf60b10083.929ENSECAG00000024681PUF609881.400Equus_caballus
ENSPREG00000005440puf60b10086.715ENSELUG00000006507puf60b10087.074Esox_lucius
ENSPREG00000005440puf60b10086.800ENSELUG00000018443-9986.800Esox_lucius
ENSPREG00000005440puf60b10083.929ENSFCAG00000001045PUF6010082.243Felis_catus
ENSPREG00000005440puf60b9974.861ENSFALG00000001136PUF609873.752Ficedula_albicollis
ENSPREG00000005440puf60b10083.730ENSFDAG00000017177PUF609381.516Fukomys_damarensis
ENSPREG00000005440puf60b10097.782ENSFHEG00000020046puf60b10097.782Fundulus_heteroclitus
ENSPREG00000005440puf60b9880.364ENSFHEG00000021687PUF6010081.743Fundulus_heteroclitus
ENSPREG00000005440puf60b10080.159ENSGMOG00000006392puf60b10079.368Gadus_morhua
ENSPREG00000005440puf60b6489.375ENSGALG00000039901PUF609386.080Gallus_gallus
ENSPREG00000005440puf60b10082.377ENSGAFG00000004334-9982.600Gambusia_affinis
ENSPREG00000005440puf60b10097.222ENSGAFG00000021040puf60b10097.154Gambusia_affinis
ENSPREG00000005440puf60b10071.543ENSGACG00000001484-10070.541Gasterosteus_aculeatus
ENSPREG00000005440puf60b9982.176ENSGACG00000004717puf60b9881.614Gasterosteus_aculeatus
ENSPREG00000005440puf60b10083.333ENSGAGG00000013289PUF609380.952Gopherus_agassizii
ENSPREG00000005440puf60b10083.730ENSGGOG00000004646PUF6010080.692Gorilla_gorilla
ENSPREG00000005440puf60b10095.968ENSHBUG00000015118puf60b10095.968Haplochromis_burtoni
ENSPREG00000005440puf60b10082.093ENSHBUG00000009634-10081.690Haplochromis_burtoni
ENSPREG00000005440puf60b10083.730ENSHGLG00000006111PUF609381.516Heterocephalus_glaber_female
ENSPREG00000005440puf60b10083.730ENSHGLG00100012362PUF609381.516Heterocephalus_glaber_male
ENSPREG00000005440puf60b9895.131ENSHCOG00000015541puf60b10095.318Hippocampus_comes
ENSPREG00000005440puf60b9868.880ENSHCOG00000000378-9966.342Hippocampus_comes
ENSPREG00000005440puf60b10083.735ENSIPUG00000002453puf60a9983.333Ictalurus_punctatus
ENSPREG00000005440puf60b10082.738ENSIPUG00000004660puf60b9982.738Ictalurus_punctatus
ENSPREG00000005440puf60b9983.179ENSSTOG00000025037PUF609481.516Ictidomys_tridecemlineatus
ENSPREG00000005440puf60b10084.127ENSJJAG00000001076Puf609282.937Jaculus_jaculus
ENSPREG00000005440puf60b9877.189ENSKMAG00000010106-10076.493Kryptolebias_marmoratus
ENSPREG00000005440puf60b9896.939ENSKMAG00000016745puf60b10096.774Kryptolebias_marmoratus
ENSPREG00000005440puf60b9895.446ENSLBEG00000012505puf60b9995.446Labrus_bergylta
ENSPREG00000005440puf60b7081.534ENSLACG00000005456PUF609579.379Latimeria_chalumnae
ENSPREG00000005440puf60b10086.347ENSLOCG00000010106puf60b10085.793Lepisosteus_oculatus
ENSPREG00000005440puf60b9982.255ENSLAFG00000022929PUF609480.591Loxodonta_africana
ENSPREG00000005440puf60b10083.730ENSMFAG00000043373PUF6010080.692Macaca_fascicularis
ENSPREG00000005440puf60b10083.730ENSMMUG00000013558PUF6010080.692Macaca_mulatta
ENSPREG00000005440puf60b10083.730ENSMNEG00000031099PUF6010080.692Macaca_nemestrina
ENSPREG00000005440puf60b10083.730ENSMLEG00000040009PUF6010082.540Mandrillus_leucophaeus
ENSPREG00000005440puf60b9896.015ENSMAMG00000010394puf60b10096.015Mastacembelus_armatus
ENSPREG00000005440puf60b10080.258ENSMAMG00000019476-10080.258Mastacembelus_armatus
ENSPREG00000005440puf60b10080.037ENSMZEG00005019425-10079.667Maylandia_zebra
ENSPREG00000005440puf60b10095.968ENSMZEG00005018515puf60b10095.968Maylandia_zebra
ENSPREG00000005440puf60b9983.734ENSMGAG00000013070PUF609882.070Meleagris_gallopavo
ENSPREG00000005440puf60b6989.796ENSMAUG00000014267-8888.047Mesocricetus_auratus
ENSPREG00000005440puf60b9866.998ENSMAUG00000018549-9568.648Mesocricetus_auratus
ENSPREG00000005440puf60b10082.514ENSMICG00000012226PUF6010080.874Microcebus_murinus
ENSPREG00000005440puf60b10084.127ENSMOCG00000018780Puf609381.701Microtus_ochrogaster
ENSPREG00000005440puf60b9895.714ENSMMOG00000004217puf60b10095.636Mola_mola
ENSPREG00000005440puf60b10075.615ENSMMOG00000018059-9978.169Mola_mola
ENSPREG00000005440puf60b10083.929ENSMODG00000009161PUF609382.738Monodelphis_domestica
ENSPREG00000005440puf60b10088.889ENSMALG00000006797puf60b10088.889Monopterus_albus
ENSPREG00000005440puf60b10078.928ENSMALG00000000200-10078.373Monopterus_albus
ENSPREG00000005440puf60b10084.325MGP_CAROLIEiJ_G0019910Puf609382.070Mus_caroli
ENSPREG00000005440puf60b10084.325ENSMUSG00000002524Puf609382.070Mus_musculus
ENSPREG00000005440puf60b10084.325MGP_PahariEiJ_G0019920Puf609382.070Mus_pahari
ENSPREG00000005440puf60b10084.325MGP_SPRETEiJ_G0020812Puf609382.070Mus_spretus
ENSPREG00000005440puf60b9982.994ENSMPUG00000008137PUF609281.331Mustela_putorius_furo
ENSPREG00000005440puf60b10080.357ENSMLUG00000013032-9779.167Myotis_lucifugus
ENSPREG00000005440puf60b9884.476ENSMLUG00000000238-9380.961Myotis_lucifugus
ENSPREG00000005440puf60b10084.127ENSNGAG00000000712Puf6010082.430Nannospalax_galili
ENSPREG00000005440puf60b10080.037ENSNBRG00000017223-10079.667Neolamprologus_brichardi
ENSPREG00000005440puf60b8297.079ENSNBRG00000013047puf60b9697.079Neolamprologus_brichardi
ENSPREG00000005440puf60b10083.730ENSNLEG00000002156PUF609782.540Nomascus_leucogenys
ENSPREG00000005440puf60b7194.094ENSOPRG00000002147PUF607293.863Ochotona_princeps
ENSPREG00000005440puf60b9861.866ENSODEG00000015513-9760.829Octodon_degus
ENSPREG00000005440puf60b7289.783ENSODEG00000014024-8889.783Octodon_degus
ENSPREG00000005440puf60b9995.497ENSONIG00000006247puf60b9895.497Oreochromis_niloticus
ENSPREG00000005440puf60b9881.670ENSONIG00000014030-9979.298Oreochromis_niloticus
ENSPREG00000005440puf60b9669.231ENSOANG00000006962PUF609765.531Ornithorhynchus_anatinus
ENSPREG00000005440puf60b9981.762ENSORLG00000028655-9981.557Oryzias_latipes
ENSPREG00000005440puf60b10096.371ENSORLG00000012279puf60b10095.825Oryzias_latipes
ENSPREG00000005440puf60b9980.074ENSORLG00020018144-9978.598Oryzias_latipes_hni
ENSPREG00000005440puf60b10095.556ENSORLG00020007333puf6010095.825Oryzias_latipes_hni
ENSPREG00000005440puf60b10095.203ENSORLG00015007718puf60b10095.463Oryzias_latipes_hsok
ENSPREG00000005440puf60b9979.889ENSORLG00015016833-9978.413Oryzias_latipes_hsok
ENSPREG00000005440puf60b10097.119ENSOMEG00000001643puf60b10097.119Oryzias_melastigma
ENSPREG00000005440puf60b9981.288ENSOMEG00000022185-9979.482Oryzias_melastigma
ENSPREG00000005440puf60b9983.179ENSOGAG00000006259PUF609381.516Otolemur_garnettii
ENSPREG00000005440puf60b10080.545ENSOARG00000016235PUF609978.085Ovis_aries
ENSPREG00000005440puf60b10083.730ENSPPAG00000029933PUF6010080.692Pan_paniscus
ENSPREG00000005440puf60b10083.929ENSPPRG00000003257PUF6010082.738Panthera_pardus
ENSPREG00000005440puf60b10083.730ENSPTIG00000009795PUF609880.658Panthera_tigris_altaica
ENSPREG00000005440puf60b10083.730ENSPTRG00000043963-9881.331Pan_troglodytes
ENSPREG00000005440puf60b10083.730ENSPTRG00000020670PUF6010080.692Pan_troglodytes
ENSPREG00000005440puf60b10083.730ENSPANG00000021936PUF6010080.692Papio_anubis
ENSPREG00000005440puf60b10088.105ENSPKIG00000012204puf60b10088.046Paramormyrops_kingsleyae
ENSPREG00000005440puf60b10087.600ENSPKIG00000004295puf60a9987.761Paramormyrops_kingsleyae
ENSPREG00000005440puf60b9983.179ENSPSIG00000004679PUF609981.516Pelodiscus_sinensis
ENSPREG00000005440puf60b10095.706ENSPMGG00000013444puf60b9995.706Periophthalmus_magnuspinnatus
ENSPREG00000005440puf60b10084.127ENSPEMG00000008820Puf609381.701Peromyscus_maniculatus_bairdii
ENSPREG00000005440puf60b5285.276ENSPMAG00000009884puf60b10085.276Petromyzon_marinus
ENSPREG00000005440puf60b10083.929ENSPCIG00000020270PUF609981.215Phascolarctos_cinereus
ENSPREG00000005440puf60b10078.782ENSPFOG00000011118-10078.967Poecilia_formosa
ENSPREG00000005440puf60b10097.984ENSPFOG00000019217puf60b9897.984Poecilia_formosa
ENSPREG00000005440puf60b10097.984ENSPLAG00000010754puf60b10097.984Poecilia_latipinna
ENSPREG00000005440puf60b10079.151ENSPLAG00000017025-9278.967Poecilia_latipinna
ENSPREG00000005440puf60b10097.984ENSPMEG00000000838puf60b10097.984Poecilia_mexicana
ENSPREG00000005440puf60b10078.967ENSPMEG00000009767-9279.151Poecilia_mexicana
ENSPREG00000005440puf60b7882.990ENSPPYG00000018951-9579.128Pongo_abelii
ENSPREG00000005440puf60b7984.131ENSPCAG00000014837PUF6010080.734Procavia_capensis
ENSPREG00000005440puf60b10083.730ENSPCOG00000027981PUF6010080.692Propithecus_coquereli
ENSPREG00000005440puf60b9897.037ENSPVAG00000016167PUF608196.203Pteropus_vampyrus
ENSPREG00000005440puf60b10080.037ENSPNYG00000004273-10079.667Pundamilia_nyererei
ENSPREG00000005440puf60b9895.510ENSPNYG00000002556puf60b10095.446Pundamilia_nyererei
ENSPREG00000005440puf60b10085.629ENSPNAG00000019909puf60a9985.828Pygocentrus_nattereri
ENSPREG00000005440puf60b10083.096ENSPNAG00000019415puf60b8982.688Pygocentrus_nattereri
ENSPREG00000005440puf60b10084.325ENSRNOG00000009960Puf609382.070Rattus_norvegicus
ENSPREG00000005440puf60b10083.730ENSRBIG00000035274PUF6010080.692Rhinopithecus_bieti
ENSPREG00000005440puf60b10083.730ENSRROG00000029360PUF6010080.692Rhinopithecus_roxellana
ENSPREG00000005440puf60b10082.341ENSSBOG00000027089PUF609978.976Saimiri_boliviensis_boliviensis
ENSPREG00000005440puf60b8982.413ENSSHAG00000006668PUF609080.573Sarcophilus_harrisii
ENSPREG00000005440puf60b9888.211ENSSFOG00015019371puf60a9988.211Scleropages_formosus
ENSPREG00000005440puf60b9887.708ENSSFOG00015019619puf60b9987.708Scleropages_formosus
ENSPREG00000005440puf60b7797.980ENSSMAG00000016381puf60b7898.366Scophthalmus_maximus
ENSPREG00000005440puf60b9978.810ENSSDUG00000007048-9780.989Seriola_dumerili
ENSPREG00000005440puf60b9997.749ENSSDUG00000009935puf60b9998.323Seriola_dumerili
ENSPREG00000005440puf60b10097.963ENSSLDG00000024011puf60b10098.102Seriola_lalandi_dorsalis
ENSPREG00000005440puf60b10079.845ENSSLDG00000007366-9980.077Seriola_lalandi_dorsalis
ENSPREG00000005440puf60b6578.788ENSSPUG00000013518PUF609278.788Sphenodon_punctatus
ENSPREG00000005440puf60b10079.806ENSSPAG00000020285-10080.943Stegastes_partitus
ENSPREG00000005440puf60b10097.407ENSSPAG00000012144puf60b10097.723Stegastes_partitus
ENSPREG00000005440puf60b10083.929ENSSSCG00000038800PUF609782.738Sus_scrofa
ENSPREG00000005440puf60b9980.996ENSTGUG00000012797-10079.815Taeniopygia_guttata
ENSPREG00000005440puf60b10080.080ENSTRUG00000008843-10079.477Takifugu_rubripes
ENSPREG00000005440puf60b10097.222ENSTRUG00000005420puf60b10097.343Takifugu_rubripes
ENSPREG00000005440puf60b9976.735ENSTNIG00000003069-9976.923Tetraodon_nigroviridis
ENSPREG00000005440puf60b9994.747ENSTNIG00000013675puf60b9994.184Tetraodon_nigroviridis
ENSPREG00000005440puf60b7864.103ENSTBEG00000001899-10064.957Tupaia_belangeri
ENSPREG00000005440puf60b5886.254ENSTBEG00000002751-9785.911Tupaia_belangeri
ENSPREG00000005440puf60b9882.731ENSTTRG00000017088PUF6010081.308Tursiops_truncatus
ENSPREG00000005440puf60b10083.929ENSUAMG00000024917PUF6010080.874Ursus_americanus
ENSPREG00000005440puf60b9881.377ENSUMAG00000000272PUF609376.895Ursus_maritimus
ENSPREG00000005440puf60b10083.929ENSVVUG00000022527PUF6010082.243Vulpes_vulpes
ENSPREG00000005440puf60b10081.944ENSXETG00000012469puf609880.952Xenopus_tropicalis
ENSPREG00000005440puf60b10097.984ENSXCOG00000012355puf60b10097.984Xiphophorus_couchianus
ENSPREG00000005440puf60b10097.984ENSXMAG00000001862puf60b10097.343Xiphophorus_maculatus
ENSPREG00000005440puf60b10080.120ENSXMAG00000010507-9879.920Xiphophorus_maculatus

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us