EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPREG00000005486 (Gene tree)
Gene ID: 103468124
Gene Symbol: snrnp70
Alias: U1 small ribonucleoprotein 70kd|snrp70|wu:fc20b04|zgc:136450
Full Name: small nuclear ribonucleoprotein U1 subunit 70
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Minus strand
Length: 17071 bases
Position: chrLG8:63596-80666
Accession: 103468124
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000008054	RRM_1	PF00076.22	1.4e-19	1	1
ENSPREP00000008024	RRM_1	PF00076.22	1.4e-19	1	1
ENSPREP00000008054	U1snRNP70_N	PF12220.8	5.1e-25	1	1
ENSPREP00000008024	U1snRNP70_N	PF12220.8	5.3e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000008117	-	3548	XM_008414975	ENSPREP00000008024	466 (aa)	XP_008413197	UPI0004A337A9
ENSPRET00000008145	-	1380	-	ENSPREP00000008054	459 (aa)	-	-

Gene Model

Click here to download ENSPREG00000005486's gene model file

Pathways

Pathway ID	Pathway Name	Source
pret03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000005486's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000005486	snrnp70	100	82.090	ENSACIG00000017909	snrnp70	100	81.450	Amphilophus_citrinellus
ENSPREG00000005486	snrnp70	100	81.590	ENSACLG00000011144	snrnp70	100	77.101	Astatotilapia_calliptera
ENSPREG00000005486	snrnp70	54	47.431	WBGene00004390	rnp-7	58	52.577	Caenorhabditis_elegans
ENSPREG00000005486	snrnp70	100	88.273	ENSFHEG00000010298	snrnp70	100	89.339	Fundulus_heteroclitus
ENSPREG00000005486	snrnp70	100	97.216	ENSGAFG00000003395	snrnp70	100	97.216	Gambusia_affinis
ENSPREG00000005486	snrnp70	100	80.128	ENSHBUG00000018856	snrnp70	100	76.496	Haplochromis_burtoni
ENSPREG00000005486	snrnp70	54	83.465	ENSLAFG00000028536	SNRNP70	96	92.342	Loxodonta_africana
ENSPREG00000005486	snrnp70	100	77.282	ENSMAMG00000004556	snrnp70	100	82.590	Mastacembelus_armatus
ENSPREG00000005486	snrnp70	100	79.744	ENSMZEG00005022849	snrnp70	100	78.252	Maylandia_zebra
ENSPREG00000005486	snrnp70	74	86.087	ENSMALG00000002275	snrnp70	89	84.396	Monopterus_albus
ENSPREG00000005486	snrnp70	100	77.378	ENSORLG00000017158	snrnp70	100	75.796	Oryzias_latipes
ENSPREG00000005486	snrnp70	100	77.590	ENSORLG00015010817	snrnp70	100	75.796	Oryzias_latipes_hsok
ENSPREG00000005486	snrnp70	100	80.769	ENSOMEG00000013002	snrnp70	100	75.107	Oryzias_melastigma
ENSPREG00000005486	snrnp70	50	90.043	ENSOARG00000012608	SNRNP70	61	91.556	Ovis_aries
ENSPREG00000005486	snrnp70	100	99.571	ENSPFOG00000016671	snrnp70	100	99.571	Poecilia_formosa
ENSPREG00000005486	snrnp70	100	99.356	ENSPLAG00000005912	snrnp70	100	99.356	Poecilia_latipinna
ENSPREG00000005486	snrnp70	100	99.571	ENSPMEG00000008496	snrnp70	100	99.571	Poecilia_mexicana
ENSPREG00000005486	snrnp70	57	73.485	ENSPCOG00000023103	SNRNP70	79	84.234	Propithecus_coquereli
ENSPREG00000005486	snrnp70	100	79.957	ENSPNYG00000003258	snrnp70	100	76.333	Pundamilia_nyererei
ENSPREG00000005486	snrnp70	100	69.546	ENSSMAG00000013978	snrnp70	73	91.827	Scophthalmus_maximus
ENSPREG00000005486	snrnp70	100	73.348	ENSTRUG00000009202	snrnp70	100	73.774	Takifugu_rubripes
ENSPREG00000005486	snrnp70	100	94.143	ENSXCOG00000008991	snrnp70	100	94.143	Xiphophorus_couchianus
ENSPREG00000005486	snrnp70	100	97.863	ENSXMAG00000012789	snrnp70	100	97.863	Xiphophorus_maculatus