EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPREG00000005566 (Gene tree)
Gene ID: -
Gene Symbol: upf3a
Alias: -
Full Name: UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Minus strand
Length: 5682 bases
Position: chrLG2:15722870-15728551
Accession: ZDB-GENE-060721-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000008154	Smg4_UPF3	PF03467.15	1.2e-41	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000008249	-	516	-	ENSPREP00000008154	171 (aa)	-	-

Gene Model

Click here to download ENSPREG00000005566's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000005566's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPREG00000005566	upf3a	74	59.722	ENSPREG00000012214	upf3b	100	59.375

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000005566	upf3a	83	64.706	ENSG00000169062	UPF3A	78	50.000	Homo_sapiens
ENSPREG00000005566	upf3a	66	73.451	ENSG00000125351	UPF3B	52	73.451	Homo_sapiens
ENSPREG00000005566	upf3a	89	88.816	ENSACIG00000020468	upf3a	93	76.812	Amphilophus_citrinellus
ENSPREG00000005566	upf3a	66	73.451	ENSANAG00000021894	-	53	73.451	Aotus_nancymaae
ENSPREG00000005566	upf3a	83	68.627	ENSBTAG00000047365	-	70	68.627	Bos_taurus
ENSPREG00000005566	upf3a	66	72.566	ENSCJAG00000004975	UPF3B	53	72.566	Callithrix_jacchus
ENSPREG00000005566	upf3a	66	72.566	ENSTSYG00000014690	UPF3B	54	64.463	Carlito_syrichta
ENSPREG00000005566	upf3a	66	73.451	ENSCATG00000017506	UPF3B	53	73.451	Cercocebus_atys
ENSPREG00000005566	upf3a	66	55.645	ENSCLAG00000000093	-	85	55.645	Chinchilla_lanigera
ENSPREG00000005566	upf3a	63	82.407	ENSCPBG00000022854	-	95	72.000	Chrysemys_picta_bellii
ENSPREG00000005566	upf3a	67	54.783	ENSCING00000008396	-	71	54.783	Ciona_intestinalis
ENSPREG00000005566	upf3a	88	94.040	ENSFHEG00000010418	upf3a	84	93.939	Fundulus_heteroclitus
ENSPREG00000005566	upf3a	69	79.661	ENSGALG00000016815	-	71	82.407	Gallus_gallus
ENSPREG00000005566	upf3a	61	84.762	ENSGAGG00000001952	UPF3A	60	84.762	Gopherus_agassizii
ENSPREG00000005566	upf3a	67	72.807	ENSGGOG00000023995	UPF3B	59	72.174	Gorilla_gorilla
ENSPREG00000005566	upf3a	89	78.289	ENSHCOG00000013985	upf3a	63	78.289	Hippocampus_comes
ENSPREG00000005566	upf3a	89	60.694	ENSSTOG00000030282	-	73	60.694	Ictidomys_tridecemlineatus
ENSPREG00000005566	upf3a	67	76.522	ENSJJAG00000018099	-	63	68.657	Jaculus_jaculus
ENSPREG00000005566	upf3a	66	73.451	ENSMFAG00000045414	UPF3B	53	73.451	Macaca_fascicularis
ENSPREG00000005566	upf3a	66	59.836	ENSMFAG00000045275	-	59	59.836	Macaca_fascicularis
ENSPREG00000005566	upf3a	75	51.449	ENSMMUG00000046682	-	69	51.449	Macaca_mulatta
ENSPREG00000005566	upf3a	66	73.451	ENSMMUG00000020222	UPF3B	53	73.451	Macaca_mulatta
ENSPREG00000005566	upf3a	66	73.451	ENSMNEG00000039794	UPF3B	53	73.451	Macaca_nemestrina
ENSPREG00000005566	upf3a	66	59.836	ENSMNEG00000040898	-	59	59.836	Macaca_nemestrina
ENSPREG00000005566	upf3a	66	73.451	ENSMLEG00000010999	UPF3B	53	73.451	Mandrillus_leucophaeus
ENSPREG00000005566	upf3a	68	53.543	ENSMICG00000042420	-	82	55.906	Microcebus_murinus
ENSPREG00000005566	upf3a	61	93.333	ENSMALG00000002454	-	58	93.333	Monopterus_albus
ENSPREG00000005566	upf3a	89	62.500	ENSNBRG00000011560	upf3b	96	62.252	Neolamprologus_brichardi
ENSPREG00000005566	upf3a	67	72.807	ENSNLEG00000014897	UPF3B	61	72.174	Nomascus_leucogenys
ENSPREG00000005566	upf3a	66	58.407	ENSNLEG00000027516	-	51	58.407	Nomascus_leucogenys
ENSPREG00000005566	upf3a	59	60.396	ENSODEG00000006064	-	51	60.396	Octodon_degus
ENSPREG00000005566	upf3a	67	72.807	ENSPPAG00000040390	UPF3B	59	72.174	Pan_paniscus
ENSPREG00000005566	upf3a	67	72.807	ENSPTRG00000022228	UPF3B	59	72.174	Pan_troglodytes
ENSPREG00000005566	upf3a	66	59.016	ENSPANG00000029350	-	59	59.016	Papio_anubis
ENSPREG00000005566	upf3a	66	73.451	ENSPANG00000000900	UPF3B	53	73.451	Papio_anubis
ENSPREG00000005566	upf3a	92	63.291	ENSPKIG00000019226	upf3b	97	63.291	Paramormyrops_kingsleyae
ENSPREG00000005566	upf3a	80	71.724	ENSPCIG00000019590	-	74	65.680	Phascolarctos_cinereus
ENSPREG00000005566	upf3a	89	98.684	ENSPLAG00000011960	upf3a	91	93.038	Poecilia_latipinna
ENSPREG00000005566	upf3a	66	73.451	ENSRROG00000041031	UPF3B	53	73.451	Rhinopithecus_roxellana
ENSPREG00000005566	upf3a	66	73.451	ENSSBOG00000019740	UPF3B	54	73.451	Saimiri_boliviensis_boliviensis
ENSPREG00000005566	upf3a	91	74.839	ENSSMAG00000003858	upf3a	97	74.839	Scophthalmus_maximus
ENSPREG00000005566	upf3a	92	85.987	ENSSDUG00000009680	upf3a	96	85.987	Seriola_dumerili
ENSPREG00000005566	upf3a	66	73.451	ENSVVUG00000011594	UPF3B	53	72.807	Vulpes_vulpes
ENSPREG00000005566	upf3a	64	74.312	ENSXCOG00000016586	upf3b	81	71.074	Xiphophorus_couchianus