EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPREG00000005645 (Gene tree)
Gene ID: -
Gene Symbol: trmt13
Alias: ccdc76|fe24e02|wu:fe24e02|zgc:110839
Full Name: tRNA methyltransferase 13 homolog
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Minus strand
Length: 9384 bases
Position: chrLG4:5604213-5613596
Accession: 103463270
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000008277	TRM13	PF05206.14	7.3e-61	1	1
ENSPREP00000008263	TRM13	PF05206.14	4.7e-33	1	1
ENSPREP00000008263	zf-U11-48K	PF05253.12	4.8e-10	1	1
ENSPREP00000008277	zf-U11-48K	PF05253.12	9.8e-10	1	1
ENSPREP00000008263	zf-TRM13_CCCH	PF11722.8	1.8e-12	1	1
ENSPREP00000008277	zf-TRM13_CCCH	PF11722.8	6.3e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000008359	-	864	-	ENSPREP00000008263	287 (aa)	-	-
ENSPRET00000008374	-	1403	XM_017304376	ENSPREP00000008277	467 (aa)	XP_017159865	-

Gene Model

Click here to download ENSPREG00000005645's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000005645's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000005645	trmt13	91	50.719	ENSG00000122435	TRMT13	96	48.837	Homo_sapiens
ENSPREG00000005645	trmt13	95	63.399	ENSAPOG00000015131	trmt13	89	63.014	Acanthochromis_polyacanthus
ENSPREG00000005645	trmt13	91	50.000	ENSAMEG00000008917	TRMT13	75	51.613	Ailuropoda_melanoleuca
ENSPREG00000005645	trmt13	95	65.845	ENSACIG00000005804	trmt13	94	58.209	Amphilophus_citrinellus
ENSPREG00000005645	trmt13	95	62.179	ENSAOCG00000023585	trmt13	81	67.337	Amphiprion_ocellaris
ENSPREG00000005645	trmt13	95	62.179	ENSAPEG00000004025	trmt13	81	67.337	Amphiprion_percula
ENSPREG00000005645	trmt13	92	64.875	ENSATEG00000006597	trmt13	77	69.811	Anabas_testudineus
ENSPREG00000005645	trmt13	76	56.410	ENSAPLG00000014924	TRMT13	75	56.098	Anas_platyrhynchos
ENSPREG00000005645	trmt13	93	53.169	ENSACAG00000003498	TRMT13	78	53.989	Anolis_carolinensis
ENSPREG00000005645	trmt13	91	50.719	ENSANAG00000019525	TRMT13	88	56.000	Aotus_nancymaae
ENSPREG00000005645	trmt13	95	66.551	ENSACLG00000020018	trmt13	86	69.588	Astatotilapia_calliptera
ENSPREG00000005645	trmt13	92	56.786	ENSAMXG00000017963	trmt13	75	58.726	Astyanax_mexicanus
ENSPREG00000005645	trmt13	91	50.903	ENSBTAG00000015781	TRMT13	79	49.490	Bos_taurus
ENSPREG00000005645	trmt13	95	30.034	WBGene00013026	Y49A3A.3	69	30.034	Caenorhabditis_elegans
ENSPREG00000005645	trmt13	91	51.273	ENSCJAG00000000200	TRMT13	89	58.865	Callithrix_jacchus
ENSPREG00000005645	trmt13	93	49.645	ENSCAFG00020011572	TRMT13	93	52.482	Canis_lupus_dingo
ENSPREG00000005645	trmt13	92	50.896	ENSCHIG00000015395	TRMT13	80	49.495	Capra_hircus
ENSPREG00000005645	trmt13	93	50.350	ENSTSYG00000010811	TRMT13	98	57.000	Carlito_syrichta
ENSPREG00000005645	trmt13	51	76.471	ENSCAPG00000009085	TRMT13	95	38.592	Cavia_aperea
ENSPREG00000005645	trmt13	92	49.822	ENSCPOG00000000694	TRMT13	82	48.762	Cavia_porcellus
ENSPREG00000005645	trmt13	91	51.079	ENSCCAG00000023772	TRMT13	88	55.000	Cebus_capucinus
ENSPREG00000005645	trmt13	91	51.079	ENSCATG00000033556	TRMT13	88	57.000	Cercocebus_atys
ENSPREG00000005645	trmt13	76	52.564	ENSCLAG00000008220	TRMT13	76	52.870	Chinchilla_lanigera
ENSPREG00000005645	trmt13	91	50.542	ENSCSAG00000001506	TRMT13	75	52.022	Chlorocebus_sabaeus
ENSPREG00000005645	trmt13	92	55.357	ENSCPBG00000026671	TRMT13	76	54.642	Chrysemys_picta_bellii
ENSPREG00000005645	trmt13	91	50.719	ENSCANG00000034659	TRMT13	88	56.000	Colobus_angolensis_palliatus
ENSPREG00000005645	trmt13	93	49.645	ENSCGRG00001021601	Trmt13	78	49.741	Cricetulus_griseus_chok1gshd
ENSPREG00000005645	trmt13	94	68.116	ENSCSEG00000000591	trmt13	80	70.225	Cynoglossus_semilaevis
ENSPREG00000005645	trmt13	97	68.456	ENSCVAG00000017342	trmt13	79	73.402	Cyprinodon_variegatus
ENSPREG00000005645	trmt13	93	55.872	ENSDARG00000102846	trmt13	79	55.937	Danio_rerio
ENSPREG00000005645	trmt13	93	50.530	ENSDNOG00000001710	TRMT13	82	52.669	Dasypus_novemcinctus
ENSPREG00000005645	trmt13	91	50.360	ENSDORG00000015808	Trmt13	75	51.882	Dipodomys_ordii
ENSPREG00000005645	trmt13	92	32.226	FBgn0037435	CG18048	79	35.263	Drosophila_melanogaster
ENSPREG00000005645	trmt13	91	43.728	ENSETEG00000005819	TRMT13	81	42.260	Echinops_telfairi
ENSPREG00000005645	trmt13	90	46.099	ENSEBUG00000014444	trmt13	82	45.596	Eptatretus_burgeri
ENSPREG00000005645	trmt13	91	49.640	ENSEASG00005015918	TRMT13	78	50.260	Equus_asinus_asinus
ENSPREG00000005645	trmt13	91	49.640	ENSECAG00000022626	TRMT13	78	50.260	Equus_caballus
ENSPREG00000005645	trmt13	80	47.967	ENSEEUG00000000294	TRMT13	61	45.485	Erinaceus_europaeus
ENSPREG00000005645	trmt13	91	55.636	ENSELUG00000003803	trmt13	82	55.725	Esox_lucius
ENSPREG00000005645	trmt13	91	48.921	ENSFCAG00000030618	TRMT13	98	48.485	Felis_catus
ENSPREG00000005645	trmt13	91	55.435	ENSFALG00000002424	TRMT13	84	51.574	Ficedula_albicollis
ENSPREG00000005645	trmt13	91	49.822	ENSFDAG00000006342	TRMT13	76	50.923	Fukomys_damarensis
ENSPREG00000005645	trmt13	93	73.050	ENSFHEG00000022954	trmt13	99	70.813	Fundulus_heteroclitus
ENSPREG00000005645	trmt13	90	58.915	ENSGMOG00000013223	trmt13	85	58.523	Gadus_morhua
ENSPREG00000005645	trmt13	90	55.474	ENSGALG00000005290	TRMT13	80	53.964	Gallus_gallus
ENSPREG00000005645	trmt13	94	85.563	ENSGAFG00000001577	trmt13	88	92.126	Gambusia_affinis
ENSPREG00000005645	trmt13	95	65.505	ENSGACG00000013428	trmt13	79	72.011	Gasterosteus_aculeatus
ENSPREG00000005645	trmt13	92	54.804	ENSGAGG00000023303	TRMT13	96	57.554	Gopherus_agassizii
ENSPREG00000005645	trmt13	91	50.719	ENSGGOG00000005616	TRMT13	88	55.000	Gorilla_gorilla
ENSPREG00000005645	trmt13	95	66.551	ENSHBUG00000007754	trmt13	86	68.798	Haplochromis_burtoni
ENSPREG00000005645	trmt13	91	50.178	ENSHGLG00000002164	TRMT13	76	51.187	Heterocephalus_glaber_female
ENSPREG00000005645	trmt13	91	50.178	ENSHGLG00100001618	TRMT13	76	51.187	Heterocephalus_glaber_male
ENSPREG00000005645	trmt13	92	57.914	ENSHCOG00000020553	trmt13	81	59.511	Hippocampus_comes
ENSPREG00000005645	trmt13	95	53.819	ENSIPUG00000024787	trmt13	89	56.604	Ictalurus_punctatus
ENSPREG00000005645	trmt13	91	50.719	ENSSTOG00000013483	TRMT13	77	50.524	Ictidomys_tridecemlineatus
ENSPREG00000005645	trmt13	94	48.601	ENSJJAG00000018012	Trmt13	76	51.075	Jaculus_jaculus
ENSPREG00000005645	trmt13	92	64.413	ENSLBEG00000020238	trmt13	80	68.901	Labrus_bergylta
ENSPREG00000005645	trmt13	92	53.405	ENSLACG00000013153	TRMT13	78	54.090	Latimeria_chalumnae
ENSPREG00000005645	trmt13	92	54.448	ENSLOCG00000000418	trmt13	77	56.522	Lepisosteus_oculatus
ENSPREG00000005645	trmt13	55	56.051	ENSLAFG00000002383	TRMT13	75	50.350	Loxodonta_africana
ENSPREG00000005645	trmt13	91	50.719	ENSMFAG00000034681	TRMT13	88	56.000	Macaca_fascicularis
ENSPREG00000005645	trmt13	91	50.719	ENSMMUG00000004243	TRMT13	88	56.000	Macaca_mulatta
ENSPREG00000005645	trmt13	91	50.719	ENSMNEG00000036102	TRMT13	88	56.000	Macaca_nemestrina
ENSPREG00000005645	trmt13	91	50.360	ENSMLEG00000034258	TRMT13	88	55.000	Mandrillus_leucophaeus
ENSPREG00000005645	trmt13	92	65.909	ENSMAMG00000016597	trmt13	84	65.337	Mastacembelus_armatus
ENSPREG00000005645	trmt13	95	66.202	ENSMZEG00005020959	trmt13	86	69.330	Maylandia_zebra
ENSPREG00000005645	trmt13	76	56.838	ENSMGAG00000006970	TRMT13	84	51.752	Meleagris_gallopavo
ENSPREG00000005645	trmt13	93	50.877	ENSMAUG00000010448	Trmt13	76	51.451	Mesocricetus_auratus
ENSPREG00000005645	trmt13	91	50.360	ENSMICG00000005283	TRMT13	96	48.837	Microcebus_murinus
ENSPREG00000005645	trmt13	92	49.643	ENSMOCG00000019914	Trmt13	75	50.535	Microtus_ochrogaster
ENSPREG00000005645	trmt13	94	59.191	ENSMMOG00000007762	trmt13	93	59.191	Mola_mola
ENSPREG00000005645	trmt13	92	51.237	ENSMODG00000003646	TRMT13	77	51.436	Monodelphis_domestica
ENSPREG00000005645	trmt13	94	66.667	ENSMALG00000020965	trmt13	90	59.200	Monopterus_albus
ENSPREG00000005645	trmt13	94	50.877	MGP_CAROLIEiJ_G0025568	Trmt13	98	49.733	Mus_caroli
ENSPREG00000005645	trmt13	94	50.699	ENSMUSG00000033439	Trmt13	98	49.733	Mus_musculus
ENSPREG00000005645	trmt13	94	50.526	MGP_PahariEiJ_G0027014	Trmt13	91	53.430	Mus_pahari
ENSPREG00000005645	trmt13	94	50.877	MGP_SPRETEiJ_G0026518	Trmt13	98	49.733	Mus_spretus
ENSPREG00000005645	trmt13	59	50.000	ENSMPUG00000002078	-	75	49.648	Mustela_putorius_furo
ENSPREG00000005645	trmt13	91	50.000	ENSMLUG00000002124	TRMT13	75	51.613	Myotis_lucifugus
ENSPREG00000005645	trmt13	95	58.333	ENSNBRG00000006783	trmt13	85	62.121	Neolamprologus_brichardi
ENSPREG00000005645	trmt13	91	50.360	ENSNLEG00000035917	TRMT13	88	56.000	Nomascus_leucogenys
ENSPREG00000005645	trmt13	83	45.238	ENSMEUG00000013346	-	95	47.561	Notamacropus_eugenii
ENSPREG00000005645	trmt13	90	51.282	ENSOPRG00000012048	TRMT13	54	53.704	Ochotona_princeps
ENSPREG00000005645	trmt13	95	66.551	ENSONIG00000004574	trmt13	86	69.054	Oreochromis_niloticus
ENSPREG00000005645	trmt13	76	55.128	ENSOANG00000012057	TRMT13	82	49.733	Ornithorhynchus_anatinus
ENSPREG00000005645	trmt13	91	49.819	ENSOCUG00000023095	TRMT13	75	51.213	Oryctolagus_cuniculus
ENSPREG00000005645	trmt13	94	56.552	ENSORLG00000003320	trmt13	82	59.897	Oryzias_latipes
ENSPREG00000005645	trmt13	94	63.469	ENSORLG00020005972	trmt13	81	62.467	Oryzias_latipes_hni
ENSPREG00000005645	trmt13	94	64.211	ENSORLG00015002270	trmt13	82	68.766	Oryzias_latipes_hsok
ENSPREG00000005645	trmt13	94	64.561	ENSOMEG00000006724	trmt13	79	69.748	Oryzias_melastigma
ENSPREG00000005645	trmt13	92	49.643	ENSOGAG00000005618	TRMT13	73	50.802	Otolemur_garnettii
ENSPREG00000005645	trmt13	92	50.896	ENSOARG00000017983	TRMT13	80	49.495	Ovis_aries
ENSPREG00000005645	trmt13	91	50.719	ENSPPAG00000043736	TRMT13	88	55.000	Pan_paniscus
ENSPREG00000005645	trmt13	91	48.921	ENSPPRG00000003424	TRMT13	98	48.485	Panthera_pardus
ENSPREG00000005645	trmt13	91	48.921	ENSPTIG00000018598	TRMT13	98	48.485	Panthera_tigris_altaica
ENSPREG00000005645	trmt13	91	50.719	ENSPTRG00000001001	TRMT13	88	55.000	Pan_troglodytes
ENSPREG00000005645	trmt13	91	50.719	ENSPANG00000007598	TRMT13	88	56.000	Papio_anubis
ENSPREG00000005645	trmt13	94	53.684	ENSPKIG00000001514	trmt13	83	56.283	Paramormyrops_kingsleyae
ENSPREG00000005645	trmt13	85	52.308	ENSPSIG00000012703	TRMT13	90	50.646	Pelodiscus_sinensis
ENSPREG00000005645	trmt13	94	62.455	ENSPMGG00000013298	trmt13	77	61.725	Periophthalmus_magnuspinnatus
ENSPREG00000005645	trmt13	91	49.281	ENSPEMG00000000275	Trmt13	77	50.262	Peromyscus_maniculatus_bairdii
ENSPREG00000005645	trmt13	93	48.276	ENSPMAG00000000823	trmt13	76	51.467	Petromyzon_marinus
ENSPREG00000005645	trmt13	94	52.281	ENSPCIG00000007699	TRMT13	76	53.439	Phascolarctos_cinereus
ENSPREG00000005645	trmt13	94	82.206	ENSPFOG00000008675	trmt13	80	91.421	Poecilia_formosa
ENSPREG00000005645	trmt13	95	86.364	ENSPLAG00000009709	trmt13	84	95.479	Poecilia_latipinna
ENSPREG00000005645	trmt13	95	86.364	ENSPMEG00000022954	trmt13	84	95.213	Poecilia_mexicana
ENSPREG00000005645	trmt13	90	51.825	ENSPPYG00000001120	TRMT13	74	53.261	Pongo_abelii
ENSPREG00000005645	trmt13	91	50.182	ENSPCAG00000002340	TRMT13	77	50.000	Procavia_capensis
ENSPREG00000005645	trmt13	91	51.439	ENSPCOG00000017984	TRMT13	88	54.000	Propithecus_coquereli
ENSPREG00000005645	trmt13	91	49.281	ENSPVAG00000017430	TRMT13	77	50.524	Pteropus_vampyrus
ENSPREG00000005645	trmt13	95	66.545	ENSPNYG00000013690	trmt13	86	65.985	Pundamilia_nyererei
ENSPREG00000005645	trmt13	92	56.429	ENSPNAG00000022130	trmt13	78	56.216	Pygocentrus_nattereri
ENSPREG00000005645	trmt13	91	50.181	ENSRNOG00000015140	Trmt13	76	51.169	Rattus_norvegicus
ENSPREG00000005645	trmt13	91	50.719	ENSRBIG00000037686	TRMT13	88	56.000	Rhinopithecus_bieti
ENSPREG00000005645	trmt13	91	51.136	ENSRROG00000044057	TRMT13	88	56.000	Rhinopithecus_roxellana
ENSPREG00000005645	trmt13	91	50.719	ENSSBOG00000026541	TRMT13	88	56.000	Saimiri_boliviensis_boliviensis
ENSPREG00000005645	trmt13	79	53.086	ENSSHAG00000005213	TRMT13	73	52.941	Sarcophilus_harrisii
ENSPREG00000005645	trmt13	95	56.164	ENSSFOG00015017560	trmt13	80	58.621	Scleropages_formosus
ENSPREG00000005645	trmt13	94	64.211	ENSSMAG00000014592	trmt13	78	69.231	Scophthalmus_maximus
ENSPREG00000005645	trmt13	96	64.846	ENSSDUG00000015508	trmt13	78	69.372	Seriola_dumerili
ENSPREG00000005645	trmt13	96	64.846	ENSSLDG00000019060	trmt13	78	69.372	Seriola_lalandi_dorsalis
ENSPREG00000005645	trmt13	92	42.456	ENSSARG00000010344	TRMT13	80	45.244	Sorex_araneus
ENSPREG00000005645	trmt13	90	53.309	ENSSPUG00000016339	TRMT13	77	52.861	Sphenodon_punctatus
ENSPREG00000005645	trmt13	95	65.035	ENSSPAG00000011922	trmt13	87	65.441	Stegastes_partitus
ENSPREG00000005645	trmt13	92	50.951	ENSSSCG00000006869	TRMT13	78	50.909	Sus_scrofa
ENSPREG00000005645	trmt13	91	55.396	ENSTGUG00000005253	TRMT13	87	51.566	Taeniopygia_guttata
ENSPREG00000005645	trmt13	95	62.414	ENSTRUG00000008400	trmt13	80	67.385	Takifugu_rubripes
ENSPREG00000005645	trmt13	52	45.652	ENSTBEG00000008911	TRMT13	61	45.652	Tupaia_belangeri
ENSPREG00000005645	trmt13	91	51.527	ENSUAMG00000017251	TRMT13	74	49.189	Ursus_americanus
ENSPREG00000005645	trmt13	91	50.000	ENSUMAG00000007901	TRMT13	75	51.917	Ursus_maritimus
ENSPREG00000005645	trmt13	63	56.897	ENSVPAG00000001034	TRMT13	60	61.224	Vicugna_pacos
ENSPREG00000005645	trmt13	91	49.281	ENSVVUG00000021996	TRMT13	82	48.462	Vulpes_vulpes
ENSPREG00000005645	trmt13	94	52.962	ENSXETG00000013204	trmt13	78	53.659	Xenopus_tropicalis
ENSPREG00000005645	trmt13	95	86.014	ENSXMAG00000010765	trmt13	84	93.351	Xiphophorus_maculatus