EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPREG00000005824 (Gene tree)
Gene ID: 103470482
Gene Symbol: smn1
Alias: fa12d01|smn|wu:fa12d01
Full Name: survival motor neuron protein 1-like
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Minus strand
Length: 5470 bases
Position: chrLG9:26357917-26363386
Accession: 103470482
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000008523	SMN	PF06003.12	3.8e-114	1	1
ENSPREP00000008557	SMN	PF06003.12	2.8e-105	1	2
ENSPREP00000008557	SMN	PF06003.12	2.8e-105	2	2
ENSPREP00000008551	SMN	PF06003.12	7.7e-98	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000008621	-	852	XM_008418950	ENSPREP00000008523	283 (aa)	XP_008417172	UPI0004A4CCBB
ENSPRET00000008651	-	774	-	ENSPREP00000008551	257 (aa)	-	-
ENSPRET00000008658	-	927	-	ENSPREP00000008557	308 (aa)	-	-

Gene Model

Click here to download ENSPREG00000005824's gene model file

Pathways

Pathway ID	Pathway Name	Source
pret03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000005824's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000005824	smn1	93	57.261	ENSG00000205571	SMN2	83	68.421	Homo_sapiens
ENSPREG00000005824	smn1	93	57.261	ENSG00000172062	SMN1	90	57.025	Homo_sapiens
ENSPREG00000005824	smn1	86	30.357	ENSAPOG00000012753	-	64	45.283	Acanthochromis_polyacanthus
ENSPREG00000005824	smn1	100	82.332	ENSAPOG00000011324	smn1	100	82.332	Acanthochromis_polyacanthus
ENSPREG00000005824	smn1	94	52.963	ENSAMEG00000003316	-	89	54.380	Ailuropoda_melanoleuca
ENSPREG00000005824	smn1	65	79.167	ENSACIG00000007598	smn1	93	79.762	Amphilophus_citrinellus
ENSPREG00000005824	smn1	93	76.426	ENSACIG00000019772	-	99	76.426	Amphilophus_citrinellus
ENSPREG00000005824	smn1	100	82.686	ENSAOCG00000024444	smn1	100	82.686	Amphiprion_ocellaris
ENSPREG00000005824	smn1	100	82.686	ENSAPEG00000016504	smn1	100	82.686	Amphiprion_percula
ENSPREG00000005824	smn1	95	82.222	ENSATEG00000002182	smn1	82	82.222	Anabas_testudineus
ENSPREG00000005824	smn1	69	42.202	ENSAPLG00000010912	-	96	49.261	Anas_platyrhynchos
ENSPREG00000005824	smn1	98	51.273	ENSACAG00000010017	-	93	55.172	Anolis_carolinensis
ENSPREG00000005824	smn1	96	51.568	ENSANAG00000032133	-	95	52.113	Aotus_nancymaae
ENSPREG00000005824	smn1	99	77.385	ENSACLG00000007308	smn1	94	77.778	Astatotilapia_calliptera
ENSPREG00000005824	smn1	100	62.676	ENSAMXG00000013884	smn1	100	65.845	Astyanax_mexicanus
ENSPREG00000005824	smn1	94	52.536	ENSBTAG00000005743	SMN2	93	53.430	Bos_taurus
ENSPREG00000005824	smn1	93	58.506	ENSCJAG00000016290	-	90	58.264	Callithrix_jacchus
ENSPREG00000005824	smn1	94	54.212	ENSCAFG00000007812	SMN	93	54.745	Canis_familiaris
ENSPREG00000005824	smn1	94	54.212	ENSCAFG00020019229	-	86	54.745	Canis_lupus_dingo
ENSPREG00000005824	smn1	94	52.364	ENSCHIG00000015559	-	91	52.899	Capra_hircus
ENSPREG00000005824	smn1	93	57.676	ENSTSYG00000012058	-	92	57.438	Carlito_syrichta
ENSPREG00000005824	smn1	73	46.860	ENSCAPG00000011021	-	88	45.226	Cavia_aperea
ENSPREG00000005824	smn1	94	52.190	ENSCPOG00000036973	-	92	52.500	Cavia_porcellus
ENSPREG00000005824	smn1	94	51.613	ENSCPOG00000012328	-	93	51.930	Cavia_porcellus
ENSPREG00000005824	smn1	93	58.091	ENSCCAG00000018127	-	90	57.851	Cebus_capucinus
ENSPREG00000005824	smn1	93	57.261	ENSCATG00000037002	-	90	57.025	Cercocebus_atys
ENSPREG00000005824	smn1	94	51.799	ENSCLAG00000000284	-	91	54.762	Chinchilla_lanigera
ENSPREG00000005824	smn1	94	52.768	ENSCSAG00000015688	-	91	54.044	Chlorocebus_sabaeus
ENSPREG00000005824	smn1	71	80.000	ENSCHOG00000007346	-	100	49.004	Choloepus_hoffmanni
ENSPREG00000005824	smn1	96	51.042	ENSCPBG00000010968	-	96	52.800	Chrysemys_picta_bellii
ENSPREG00000005824	smn1	93	57.676	ENSCANG00000038242	-	93	54.924	Colobus_angolensis_palliatus
ENSPREG00000005824	smn1	94	52.675	ENSCANG00000033324	-	90	52.697	Colobus_angolensis_palliatus
ENSPREG00000005824	smn1	94	54.444	ENSCGRG00001017959	-	93	53.091	Cricetulus_griseus_chok1gshd
ENSPREG00000005824	smn1	94	41.418	ENSCGRG00001016998	-	91	40.590	Cricetulus_griseus_chok1gshd
ENSPREG00000005824	smn1	94	54.444	ENSCGRG00000007698	Smn1	93	53.091	Cricetulus_griseus_crigri
ENSPREG00000005824	smn1	97	64.561	ENSCSEG00000015227	smn1	99	64.912	Cynoglossus_semilaevis
ENSPREG00000005824	smn1	100	90.141	ENSCVAG00000007498	smn1	100	90.141	Cyprinodon_variegatus
ENSPREG00000005824	smn1	100	64.931	ENSDARG00000018494	smn1	100	63.448	Danio_rerio
ENSPREG00000005824	smn1	82	47.280	ENSDNOG00000007283	-	97	48.347	Dasypus_novemcinctus
ENSPREG00000005824	smn1	82	43.290	ENSDNOG00000045949	-	70	50.898	Dasypus_novemcinctus
ENSPREG00000005824	smn1	93	44.569	ENSDORG00000007082	Smn1	91	45.817	Dipodomys_ordii
ENSPREG00000005824	smn1	63	50.000	ENSETEG00000001406	-	87	48.045	Echinops_telfairi
ENSPREG00000005824	smn1	96	39.510	ENSEBUG00000011902	smn1	96	42.254	Eptatretus_burgeri
ENSPREG00000005824	smn1	89	47.082	ENSEASG00005018000	-	89	48.077	Equus_asinus_asinus
ENSPREG00000005824	smn1	94	52.206	ENSECAG00000015215	-	93	53.455	Equus_caballus
ENSPREG00000005824	smn1	88	50.951	ENSEEUG00000015777	-	100	49.421	Erinaceus_europaeus
ENSPREG00000005824	smn1	97	69.708	ENSELUG00000018067	smn1	100	68.198	Esox_lucius
ENSPREG00000005824	smn1	93	56.846	ENSFCAG00000028292	SMN	92	56.612	Felis_catus
ENSPREG00000005824	smn1	95	56.522	ENSFALG00000012320	-	95	52.308	Ficedula_albicollis
ENSPREG00000005824	smn1	94	47.872	ENSFDAG00000017683	-	92	50.000	Fukomys_damarensis
ENSPREG00000005824	smn1	97	88.768	ENSFHEG00000018508	smn1	100	88.768	Fundulus_heteroclitus
ENSPREG00000005824	smn1	100	65.724	ENSGMOG00000017279	smn1	98	63.958	Gadus_morhua
ENSPREG00000005824	smn1	94	52.632	ENSGALG00000002430	SMN	95	56.589	Gallus_gallus
ENSPREG00000005824	smn1	100	98.233	ENSGAFG00000009501	smn1	100	98.233	Gambusia_affinis
ENSPREG00000005824	smn1	100	80.212	ENSGACG00000010584	smn1	97	78.445	Gasterosteus_aculeatus
ENSPREG00000005824	smn1	97	36.134	ENSGAGG00000013639	-	95	40.933	Gopherus_agassizii
ENSPREG00000005824	smn1	96	53.069	ENSGAGG00000011374	-	95	56.835	Gopherus_agassizii
ENSPREG00000005824	smn1	67	57.225	ENSGGOG00000026704	-	85	55.376	Gorilla_gorilla
ENSPREG00000005824	smn1	90	57.511	ENSGGOG00000003872	-	93	57.511	Gorilla_gorilla
ENSPREG00000005824	smn1	100	80.212	ENSHBUG00000013987	smn1	100	80.212	Haplochromis_burtoni
ENSPREG00000005824	smn1	94	50.725	ENSHGLG00000001018	-	92	51.064	Heterocephalus_glaber_female
ENSPREG00000005824	smn1	94	47.985	ENSHGLG00000001905	-	94	51.838	Heterocephalus_glaber_female
ENSPREG00000005824	smn1	92	47.940	ENSHGLG00100018676	-	96	51.880	Heterocephalus_glaber_male
ENSPREG00000005824	smn1	94	50.725	ENSHGLG00100011252	-	92	51.064	Heterocephalus_glaber_male
ENSPREG00000005824	smn1	94	71.910	ENSHCOG00000017136	smn1	89	72.453	Hippocampus_comes
ENSPREG00000005824	smn1	100	65.625	ENSIPUG00000012580	smn1	86	66.667	Ictalurus_punctatus
ENSPREG00000005824	smn1	91	51.515	ENSSTOG00000012288	-	93	53.208	Ictidomys_tridecemlineatus
ENSPREG00000005824	smn1	56	51.748	ENSJJAG00000014853	-	80	100.000	Jaculus_jaculus
ENSPREG00000005824	smn1	100	80.769	ENSKMAG00000007239	smn1	100	80.769	Kryptolebias_marmoratus
ENSPREG00000005824	smn1	100	82.042	ENSLBEG00000022550	smn1	100	82.042	Labrus_bergylta
ENSPREG00000005824	smn1	97	36.610	ENSLACG00000009808	-	95	36.364	Latimeria_chalumnae
ENSPREG00000005824	smn1	100	56.204	ENSLOCG00000011339	smn1	100	60.076	Lepisosteus_oculatus
ENSPREG00000005824	smn1	97	32.624	ENSLOCG00000000801	-	94	30.903	Lepisosteus_oculatus
ENSPREG00000005824	smn1	94	51.449	ENSLAFG00000003425	-	99	46.000	Loxodonta_africana
ENSPREG00000005824	smn1	94	49.815	ENSMFAG00000008812	-	91	50.362	Macaca_fascicularis
ENSPREG00000005824	smn1	93	58.091	ENSMFAG00000031523	SMN1	95	53.030	Macaca_fascicularis
ENSPREG00000005824	smn1	94	49.077	ENSMMUG00000030594	-	91	49.638	Macaca_mulatta
ENSPREG00000005824	smn1	93	58.091	ENSMMUG00000020214	SMN1	90	57.851	Macaca_mulatta
ENSPREG00000005824	smn1	76	39.819	ENSMNEG00000036423	-	81	40.465	Macaca_nemestrina
ENSPREG00000005824	smn1	93	58.091	ENSMNEG00000035094	-	90	57.851	Macaca_nemestrina
ENSPREG00000005824	smn1	93	58.091	ENSMLEG00000041902	-	91	57.851	Mandrillus_leucophaeus
ENSPREG00000005824	smn1	100	80.282	ENSMAMG00000011034	smn1	100	80.282	Mastacembelus_armatus
ENSPREG00000005824	smn1	100	80.565	ENSMZEG00005013634	smn1	100	80.565	Maylandia_zebra
ENSPREG00000005824	smn1	69	48.500	ENSMGAG00000008889	-	94	50.829	Meleagris_gallopavo
ENSPREG00000005824	smn1	94	52.222	ENSMAUG00000010262	Smn1	93	53.455	Mesocricetus_auratus
ENSPREG00000005824	smn1	83	46.250	ENSMICG00000034708	-	80	56.354	Microcebus_murinus
ENSPREG00000005824	smn1	94	53.650	ENSMOCG00000017833	Smn1	92	53.309	Microtus_ochrogaster
ENSPREG00000005824	smn1	96	70.722	ENSMMOG00000005504	smn1	97	73.946	Mola_mola
ENSPREG00000005824	smn1	97	52.414	ENSMODG00000001436	-	95	54.577	Monodelphis_domestica
ENSPREG00000005824	smn1	100	82.042	ENSMALG00000008025	smn1	100	82.042	Monopterus_albus
ENSPREG00000005824	smn1	94	53.285	MGP_CAROLIEiJ_G0018836	Smn1	93	53.285	Mus_caroli
ENSPREG00000005824	smn1	94	52.920	ENSMUSG00000021645	Smn1	93	52.963	Mus_musculus
ENSPREG00000005824	smn1	94	54.815	MGP_PahariEiJ_G0015911	Smn1	93	55.311	Mus_pahari
ENSPREG00000005824	smn1	94	53.285	MGP_SPRETEiJ_G0019718	Smn1	93	52.963	Mus_spretus
ENSPREG00000005824	smn1	92	52.963	ENSMPUG00000014470	-	93	54.244	Mustela_putorius_furo
ENSPREG00000005824	smn1	94	51.439	ENSMLUG00000010603	-	89	53.069	Myotis_lucifugus
ENSPREG00000005824	smn1	94	51.282	ENSNGAG00000019833	Smn1	93	53.285	Nannospalax_galili
ENSPREG00000005824	smn1	100	81.979	ENSNBRG00000023000	smn1	100	81.979	Neolamprologus_brichardi
ENSPREG00000005824	smn1	94	57.438	ENSNLEG00000004454	-	90	57.438	Nomascus_leucogenys
ENSPREG00000005824	smn1	80	48.052	ENSMEUG00000011393	-	100	47.619	Notamacropus_eugenii
ENSPREG00000005824	smn1	87	49.802	ENSOPRG00000002015	-	100	53.053	Ochotona_princeps
ENSPREG00000005824	smn1	91	53.030	ENSODEG00000015976	-	90	52.222	Octodon_degus
ENSPREG00000005824	smn1	100	81.625	ENSONIG00000011799	smn1	100	81.625	Oreochromis_niloticus
ENSPREG00000005824	smn1	94	48.485	ENSOANG00000001626	-	95	53.791	Ornithorhynchus_anatinus
ENSPREG00000005824	smn1	94	52.768	ENSOCUG00000017097	-	92	53.285	Oryctolagus_cuniculus
ENSPREG00000005824	smn1	94	42.545	ENSOCUG00000025183	-	92	44.186	Oryctolagus_cuniculus
ENSPREG00000005824	smn1	94	52.536	ENSOCUG00000026649	-	92	52.688	Oryctolagus_cuniculus
ENSPREG00000005824	smn1	100	80.565	ENSORLG00000010552	smn1	100	80.565	Oryzias_latipes
ENSPREG00000005824	smn1	100	81.081	ENSORLG00020007936	smn1	100	81.081	Oryzias_latipes_hni
ENSPREG00000005824	smn1	100	80.565	ENSORLG00015022425	smn1	100	80.565	Oryzias_latipes_hsok
ENSPREG00000005824	smn1	100	80.565	ENSOMEG00000007824	smn1	100	80.565	Oryzias_melastigma
ENSPREG00000005824	smn1	91	47.584	ENSOGAG00000031414	-	92	48.327	Otolemur_garnettii
ENSPREG00000005824	smn1	94	50.909	ENSOARG00000005425	-	97	50.362	Ovis_aries
ENSPREG00000005824	smn1	93	56.846	ENSPPAG00000036640	-	90	56.612	Pan_paniscus
ENSPREG00000005824	smn1	93	57.261	ENSPPRG00000005575	-	92	57.025	Panthera_pardus
ENSPREG00000005824	smn1	93	57.261	ENSPTIG00000007745	-	92	57.025	Panthera_tigris_altaica
ENSPREG00000005824	smn1	93	57.261	ENSPTRG00000016955	-	90	57.025	Pan_troglodytes
ENSPREG00000005824	smn1	94	57.851	ENSPANG00000013601	-	90	57.851	Papio_anubis
ENSPREG00000005824	smn1	94	50.554	ENSPANG00000000253	-	91	51.822	Papio_anubis
ENSPREG00000005824	smn1	100	60.920	ENSPKIG00000011096	smn1	100	60.536	Paramormyrops_kingsleyae
ENSPREG00000005824	smn1	92	52.381	ENSPSIG00000014787	-	83	55.777	Pelodiscus_sinensis
ENSPREG00000005824	smn1	100	67.972	ENSPMGG00000012285	smn1	100	67.500	Periophthalmus_magnuspinnatus
ENSPREG00000005824	smn1	92	42.007	ENSPMAG00000005004	smn1	90	41.045	Petromyzon_marinus
ENSPREG00000005824	smn1	97	52.069	ENSPCIG00000025764	-	97	54.225	Phascolarctos_cinereus
ENSPREG00000005824	smn1	100	98.587	ENSPFOG00000007786	smn1	100	98.587	Poecilia_formosa
ENSPREG00000005824	smn1	100	98.940	ENSPLAG00000012071	smn1	100	98.940	Poecilia_latipinna
ENSPREG00000005824	smn1	100	98.587	ENSPMEG00000017085	smn1	100	98.587	Poecilia_mexicana
ENSPREG00000005824	smn1	88	40.964	ENSPPYG00000019189	-	99	41.365	Pongo_abelii
ENSPREG00000005824	smn1	92	50.758	ENSPPYG00000015533	-	95	52.273	Pongo_abelii
ENSPREG00000005824	smn1	91	48.699	ENSPCAG00000004187	-	97	50.741	Procavia_capensis
ENSPREG00000005824	smn1	70	51.934	ENSPCOG00000022307	-	65	59.722	Propithecus_coquereli
ENSPREG00000005824	smn1	94	53.676	ENSPVAG00000005977	-	92	55.036	Pteropus_vampyrus
ENSPREG00000005824	smn1	100	81.979	ENSPNYG00000014148	smn1	100	81.979	Pundamilia_nyererei
ENSPREG00000005824	smn1	100	64.583	ENSPNAG00000014007	smn1	87	67.018	Pygocentrus_nattereri
ENSPREG00000005824	smn1	95	52.899	ENSRNOG00000018067	Smn1	93	53.091	Rattus_norvegicus
ENSPREG00000005824	smn1	91	51.852	ENSRBIG00000036775	-	88	51.852	Rhinopithecus_bieti
ENSPREG00000005824	smn1	93	57.676	ENSRBIG00000037052	-	90	57.438	Rhinopithecus_bieti
ENSPREG00000005824	smn1	94	51.394	ENSRROG00000031088	-	91	52.049	Rhinopithecus_roxellana
ENSPREG00000005824	smn1	93	57.676	ENSRROG00000039399	-	90	57.438	Rhinopithecus_roxellana
ENSPREG00000005824	smn1	56	58.667	ENSSBOG00000020112	-	87	46.400	Saimiri_boliviensis_boliviensis
ENSPREG00000005824	smn1	93	58.921	ENSSBOG00000011665	-	86	67.123	Saimiri_boliviensis_boliviensis
ENSPREG00000005824	smn1	96	52.595	ENSSHAG00000001499	-	98	53.480	Sarcophilus_harrisii
ENSPREG00000005824	smn1	100	62.595	ENSSFOG00015015507	smn1	100	62.595	Scleropages_formosus
ENSPREG00000005824	smn1	100	78.445	ENSSMAG00000007922	smn1	100	78.445	Scophthalmus_maximus
ENSPREG00000005824	smn1	100	85.563	ENSSDUG00000018533	smn1	100	85.563	Seriola_dumerili
ENSPREG00000005824	smn1	100	85.915	ENSSLDG00000021135	smn1	100	85.915	Seriola_lalandi_dorsalis
ENSPREG00000005824	smn1	96	56.429	ENSSPUG00000000373	-	99	54.909	Sphenodon_punctatus
ENSPREG00000005824	smn1	100	81.979	ENSSPAG00000004345	smn1	100	81.979	Stegastes_partitus
ENSPREG00000005824	smn1	93	42.683	ENSSSCG00000029127	-	91	44.813	Sus_scrofa
ENSPREG00000005824	smn1	94	53.261	ENSSSCG00000016970	-	92	53.763	Sus_scrofa
ENSPREG00000005824	smn1	91	53.818	ENSTGUG00000001548	-	95	49.627	Taeniopygia_guttata
ENSPREG00000005824	smn1	100	66.078	ENSTRUG00000000736	smn	100	68.551	Takifugu_rubripes
ENSPREG00000005824	smn1	100	65.172	ENSTNIG00000009892	smn1	100	67.241	Tetraodon_nigroviridis
ENSPREG00000005824	smn1	59	61.783	ENSTBEG00000002399	-	83	57.303	Tupaia_belangeri
ENSPREG00000005824	smn1	59	60.256	ENSTTRG00000005080	-	91	54.745	Tursiops_truncatus
ENSPREG00000005824	smn1	59	62.179	ENSUAMG00000024947	-	63	58.286	Ursus_americanus
ENSPREG00000005824	smn1	94	53.704	ENSUMAG00000007842	-	69	55.109	Ursus_maritimus
ENSPREG00000005824	smn1	63	77.778	ENSVPAG00000009887	-	93	50.189	Vicugna_pacos
ENSPREG00000005824	smn1	94	54.212	ENSVVUG00000006934	-	93	54.745	Vulpes_vulpes
ENSPREG00000005824	smn1	51	65.517	ENSXETG00000004912	-	80	65.517	Xenopus_tropicalis
ENSPREG00000005824	smn1	95	55.957	ENSXETG00000018189	smn2	95	55.052	Xenopus_tropicalis
ENSPREG00000005824	smn1	100	96.887	ENSXMAG00000001521	smn1	100	96.887	Xiphophorus_maculatus