EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPREG00000006280 (Gene tree)
Gene ID: 103456837
Gene Symbol: si:dkey-37o8.1
Alias: fi12b10|wu:fi12b10
Full Name: elongation factor 1-alpha-like
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Minus strand
Length: 6135 bases
Position: chrLG20:21920750-21926884
Accession: 103456837
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000009235	GTP_EFTU	PF00009.27	5e-54	1	1
ENSPREP00000009261	GTP_EFTU	PF00009.27	2.4e-53	1	1
ENSPREP00000009208	GTP_EFTU	PF00009.27	4.2e-21	1	1
ENSPREP00000009235	MMR_HSR1	PF01926.23	2.8e-08	1	1
ENSPREP00000009261	MMR_HSR1	PF01926.23	1.5e-07	1	1
ENSPREP00000009261	GTP_EFTU_D2	PF03144.25	4.3e-13	1	1
ENSPREP00000009261	GTP_EFTU_D3	PF03143.17	5e-34	1	1
ENSPREP00000009208	GTP_EFTU_D3	PF03143.17	5.3e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000009345	-	765	-	ENSPREP00000009235	254 (aa)	-	-
ENSPRET00000009372	-	1359	XM_008396648	ENSPREP00000009261	452 (aa)	XP_008394870	-
ENSPRET00000009318	-	534	-	ENSPREP00000009208	177 (aa)	-	-

Gene Model

Click here to download ENSPREG00000006280's gene model file

Pathways

Pathway ID	Pathway Name	Source
pret03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000006280's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPREG00000006280	si:dkey-37o8.1	100	67.538	ENSPREG00000004165	EEF1A1	99	67.538
ENSPREG00000006280	si:dkey-37o8.1	93	34.454	ENSPREG00000013913	tufm	87	30.942
ENSPREG00000006280	si:dkey-37o8.1	94	46.091	ENSPREG00000011270	hbs1l	61	38.202
ENSPREG00000006280	si:dkey-37o8.1	95	37.875	ENSPREG00000008023	gspt1l	67	37.875
ENSPREG00000006280	si:dkey-37o8.1	100	67.538	ENSPREG00000001416	eef1a1b	99	67.538
ENSPREG00000006280	si:dkey-37o8.1	95	73.626	ENSPREG00000008243	-	98	68.212
ENSPREG00000006280	si:dkey-37o8.1	96	38.161	ENSPREG00000016668	-	86	38.249

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000006280	si:dkey-37o8.1	98	90.337	ENSAPOG00000016459	si:dkey-37o8.1	98	90.337	Acanthochromis_polyacanthus
ENSPREG00000006280	si:dkey-37o8.1	98	86.637	ENSACIG00000020985	si:dkey-37o8.1	84	86.637	Amphilophus_citrinellus
ENSPREG00000006280	si:dkey-37o8.1	100	89.868	ENSAOCG00000002663	si:dkey-37o8.1	99	89.868	Amphiprion_ocellaris
ENSPREG00000006280	si:dkey-37o8.1	100	89.868	ENSAPEG00000012670	si:dkey-37o8.1	99	89.868	Amphiprion_percula
ENSPREG00000006280	si:dkey-37o8.1	96	88.115	ENSATEG00000002217	si:dkey-37o8.1	98	91.148	Anabas_testudineus
ENSPREG00000006280	si:dkey-37o8.1	98	89.438	ENSACLG00000003519	si:dkey-37o8.1	98	89.438	Astatotilapia_calliptera
ENSPREG00000006280	si:dkey-37o8.1	100	83.956	ENSAMXG00000002728	si:dkey-37o8.1	99	83.956	Astyanax_mexicanus
ENSPREG00000006280	si:dkey-37o8.1	99	71.111	ENSCPBG00000020570	-	89	71.111	Chrysemys_picta_bellii
ENSPREG00000006280	si:dkey-37o8.1	98	84.855	ENSCSEG00000019807	si:dkey-37o8.1	98	84.141	Cynoglossus_semilaevis
ENSPREG00000006280	si:dkey-37o8.1	99	92.920	ENSCVAG00000009828	si:dkey-37o8.1	99	92.920	Cyprinodon_variegatus
ENSPREG00000006280	si:dkey-37o8.1	100	81.319	ENSDARG00000071727	si:dkey-37o8.1	94	81.319	Danio_rerio
ENSPREG00000006280	si:dkey-37o8.1	100	83.956	ENSELUG00000007495	si:dkey-37o8.1	99	83.956	Esox_lucius
ENSPREG00000006280	si:dkey-37o8.1	100	93.172	ENSFHEG00000017452	si:dkey-37o8.1	99	93.172	Fundulus_heteroclitus
ENSPREG00000006280	si:dkey-37o8.1	99	82.072	ENSGMOG00000006122	si:dkey-37o8.1	99	79.379	Gadus_morhua
ENSPREG00000006280	si:dkey-37o8.1	94	97.059	ENSGAFG00000000367	si:dkey-37o8.1	99	89.213	Gambusia_affinis
ENSPREG00000006280	si:dkey-37o8.1	100	86.564	ENSGACG00000004505	si:dkey-37o8.1	99	86.564	Gasterosteus_aculeatus
ENSPREG00000006280	si:dkey-37o8.1	97	73.182	ENSGAGG00000007724	-	93	76.923	Gopherus_agassizii
ENSPREG00000006280	si:dkey-37o8.1	98	89.213	ENSHBUG00000015515	si:dkey-37o8.1	98	89.213	Haplochromis_burtoni
ENSPREG00000006280	si:dkey-37o8.1	99	79.464	ENSHCOG00000001215	si:dkey-37o8.1	99	79.464	Hippocampus_comes
ENSPREG00000006280	si:dkey-37o8.1	100	82.418	ENSIPUG00000004067	si:dkey-37o8.1	99	82.418	Ictalurus_punctatus
ENSPREG00000006280	si:dkey-37o8.1	100	91.189	ENSKMAG00000015910	si:dkey-37o8.1	99	91.189	Kryptolebias_marmoratus
ENSPREG00000006280	si:dkey-37o8.1	99	89.955	ENSLBEG00000021334	si:dkey-37o8.1	89	89.955	Labrus_bergylta
ENSPREG00000006280	si:dkey-37o8.1	99	74.945	ENSLACG00000003948	si:dkey-37o8.1	98	74.945	Latimeria_chalumnae
ENSPREG00000006280	si:dkey-37o8.1	100	80.263	ENSLOCG00000011245	si:dkey-37o8.1	99	80.263	Lepisosteus_oculatus
ENSPREG00000006280	si:dkey-37o8.1	99	75.000	ENSMAMG00000009907	si:dkey-37o8.1	94	75.000	Mastacembelus_armatus
ENSPREG00000006280	si:dkey-37o8.1	98	89.438	ENSMZEG00005018358	si:dkey-37o8.1	98	89.438	Maylandia_zebra
ENSPREG00000006280	si:dkey-37o8.1	98	88.315	ENSMMOG00000004111	si:dkey-37o8.1	97	88.315	Mola_mola
ENSPREG00000006280	si:dkey-37o8.1	96	80.505	ENSMALG00000017152	si:dkey-37o8.1	99	80.505	Monopterus_albus
ENSPREG00000006280	si:dkey-37o8.1	98	89.213	ENSNBRG00000013552	si:dkey-37o8.1	98	89.213	Neolamprologus_brichardi
ENSPREG00000006280	si:dkey-37o8.1	98	88.989	ENSONIG00000006165	si:dkey-37o8.1	98	88.989	Oreochromis_niloticus
ENSPREG00000006280	si:dkey-37o8.1	100	90.308	ENSORLG00000019066	si:dkey-37o8.1	99	90.308	Oryzias_latipes
ENSPREG00000006280	si:dkey-37o8.1	100	90.308	ENSORLG00020008094	si:dkey-37o8.1	99	90.308	Oryzias_latipes_hni
ENSPREG00000006280	si:dkey-37o8.1	100	90.088	ENSORLG00015008410	si:dkey-37o8.1	99	90.088	Oryzias_latipes_hsok
ENSPREG00000006280	si:dkey-37o8.1	100	90.529	ENSOMEG00000001868	si:dkey-37o8.1	99	90.529	Oryzias_melastigma
ENSPREG00000006280	si:dkey-37o8.1	100	82.018	ENSPKIG00000017246	si:dkey-37o8.1	99	82.018	Paramormyrops_kingsleyae
ENSPREG00000006280	si:dkey-37o8.1	59	66.423	ENSPSIG00000008080	-	96	66.423	Pelodiscus_sinensis
ENSPREG00000006280	si:dkey-37o8.1	97	83.041	ENSPMGG00000013752	si:dkey-37o8.1	97	83.041	Periophthalmus_magnuspinnatus
ENSPREG00000006280	si:dkey-37o8.1	100	97.797	ENSPFOG00000013173	si:dkey-37o8.1	99	97.797	Poecilia_formosa
ENSPREG00000006280	si:dkey-37o8.1	100	96.256	ENSPLAG00000010405	si:dkey-37o8.1	99	96.256	Poecilia_latipinna
ENSPREG00000006280	si:dkey-37o8.1	100	97.797	ENSPMEG00000015233	si:dkey-37o8.1	99	97.797	Poecilia_mexicana
ENSPREG00000006280	si:dkey-37o8.1	98	88.764	ENSPNYG00000002059	si:dkey-37o8.1	98	88.764	Pundamilia_nyererei
ENSPREG00000006280	si:dkey-37o8.1	100	83.077	ENSPNAG00000009990	si:dkey-37o8.1	99	83.077	Pygocentrus_nattereri
ENSPREG00000006280	si:dkey-37o8.1	98	81.879	ENSSFOG00015019070	si:dkey-37o8.1	98	81.879	Scleropages_formosus
ENSPREG00000006280	si:dkey-37o8.1	99	90.179	ENSSMAG00000016143	si:dkey-37o8.1	98	90.179	Scophthalmus_maximus
ENSPREG00000006280	si:dkey-37o8.1	100	90.529	ENSSDUG00000009163	si:dkey-37o8.1	99	90.529	Seriola_dumerili
ENSPREG00000006280	si:dkey-37o8.1	100	90.308	ENSSLDG00000023761	si:dkey-37o8.1	99	90.308	Seriola_lalandi_dorsalis
ENSPREG00000006280	si:dkey-37o8.1	99	70.444	ENSSPUG00000007467	-	98	70.444	Sphenodon_punctatus
ENSPREG00000006280	si:dkey-37o8.1	99	90.646	ENSSPAG00000013856	si:dkey-37o8.1	98	90.646	Stegastes_partitus
ENSPREG00000006280	si:dkey-37o8.1	98	90.068	ENSTRUG00000009006	si:dkey-37o8.1	99	90.068	Takifugu_rubripes
ENSPREG00000006280	si:dkey-37o8.1	98	89.213	ENSTNIG00000017138	si:dkey-37o8.1	96	89.213	Tetraodon_nigroviridis
ENSPREG00000006280	si:dkey-37o8.1	97	74.715	ENSXETG00000017744	42Sp50	97	73.392	Xenopus_tropicalis
ENSPREG00000006280	si:dkey-37o8.1	100	97.124	ENSXCOG00000012296	si:dkey-37o8.1	100	97.124	Xiphophorus_couchianus
ENSPREG00000006280	si:dkey-37o8.1	100	96.696	ENSXMAG00000001998	si:dkey-37o8.1	99	96.696	Xiphophorus_maculatus