EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPREG00000007323 (Gene tree)
Gene ID: 103476505
Gene Symbol: lig4
Alias: zgc:165595
Full Name: DNA ligase 4
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Plus strand
Length: 3133 bases
Position: chrLG2:1163627-1166759
Accession: 103476505
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000010713	RNA_ligase	PF09414.10	5e-09	1	1
ENSPREP00000010705	RNA_ligase	PF09414.10	5.2e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000010831	-	2735	XM_008428912	ENSPREP00000010705	908 (aa)	XP_008427134	UPI0004A466E1
ENSPRET00000010839	-	2663	-	ENSPREP00000010713	884 (aa)	-	-

Gene Model

Click here to download ENSPREG00000007323's gene model file

Pathways

Pathway ID	Pathway Name	Source
pret03450	Non-homologous end-joining	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000007323's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000007323	lig4	99	65.275	ENSG00000174405	LIG4	100	66.114	Homo_sapiens
ENSPREG00000007323	lig4	100	88.377	ENSAPOG00000000866	lig4	100	87.829	Acanthochromis_polyacanthus
ENSPREG00000007323	lig4	99	64.372	ENSAMEG00000019685	LIG4	98	64.627	Ailuropoda_melanoleuca
ENSPREG00000007323	lig4	99	88.694	ENSACIG00000018309	lig4	98	89.262	Amphilophus_citrinellus
ENSPREG00000007323	lig4	100	88.048	ENSAOCG00000011768	lig4	100	87.500	Amphiprion_ocellaris
ENSPREG00000007323	lig4	100	88.268	ENSAPEG00000017815	lig4	100	87.719	Amphiprion_percula
ENSPREG00000007323	lig4	100	88.048	ENSATEG00000005583	lig4	100	87.610	Anabas_testudineus
ENSPREG00000007323	lig4	96	67.503	ENSAPLG00000001673	LIG4	99	67.389	Anas_platyrhynchos
ENSPREG00000007323	lig4	99	67.774	ENSACAG00000014566	LIG4	99	68.121	Anolis_carolinensis
ENSPREG00000007323	lig4	99	65.423	ENSANAG00000012446	LIG4	99	65.406	Aotus_nancymaae
ENSPREG00000007323	lig4	100	87.390	ENSACLG00000027051	lig4	100	87.061	Astatotilapia_calliptera
ENSPREG00000007323	lig4	100	80.480	ENSAMXG00000008192	lig4	95	80.480	Astyanax_mexicanus
ENSPREG00000007323	lig4	99	64.835	ENSBTAG00000015868	LIG4	99	65.295	Bos_taurus
ENSPREG00000007323	lig4	99	64.874	ENSCJAG00000014689	LIG4	99	65.072	Callithrix_jacchus
ENSPREG00000007323	lig4	99	64.615	ENSCAFG00000006031	LIG4	99	64.961	Canis_familiaris
ENSPREG00000007323	lig4	99	64.615	ENSCAFG00020021230	LIG4	99	64.961	Canis_lupus_dingo
ENSPREG00000007323	lig4	99	64.725	ENSCHIG00000001019	LIG4	99	65.184	Capra_hircus
ENSPREG00000007323	lig4	98	64.270	ENSCAPG00000006284	LIG4	99	63.960	Cavia_aperea
ENSPREG00000007323	lig4	99	63.776	ENSCPOG00000014266	LIG4	99	63.849	Cavia_porcellus
ENSPREG00000007323	lig4	99	65.165	ENSCCAG00000019971	LIG4	99	65.406	Cebus_capucinus
ENSPREG00000007323	lig4	99	65.495	ENSCATG00000021075	LIG4	99	65.517	Cercocebus_atys
ENSPREG00000007323	lig4	99	64.874	ENSCLAG00000003376	LIG4	99	65.072	Chinchilla_lanigera
ENSPREG00000007323	lig4	99	65.165	ENSCSAG00000000211	LIG4	99	65.517	Chlorocebus_sabaeus
ENSPREG00000007323	lig4	98	68.812	ENSCPBG00000023291	LIG4	98	68.973	Chrysemys_picta_bellii
ENSPREG00000007323	lig4	70	46.986	ENSCING00000009536	-	96	47.468	Ciona_intestinalis
ENSPREG00000007323	lig4	83	45.132	ENSCSAVG00000010336	-	98	45.046	Ciona_savignyi
ENSPREG00000007323	lig4	99	64.725	ENSCANG00000005805	LIG4	99	65.184	Colobus_angolensis_palliatus
ENSPREG00000007323	lig4	99	63.886	ENSCGRG00001012072	Lig4	99	64.333	Cricetulus_griseus_chok1gshd
ENSPREG00000007323	lig4	99	63.886	ENSCGRG00000013417	Lig4	99	64.333	Cricetulus_griseus_crigri
ENSPREG00000007323	lig4	97	84.589	ENSCSEG00000013905	lig4	94	85.121	Cynoglossus_semilaevis
ENSPREG00000007323	lig4	100	91.019	ENSCVAG00000007896	lig4	100	90.361	Cyprinodon_variegatus
ENSPREG00000007323	lig4	100	79.386	ENSDARG00000060620	lig4	100	79.167	Danio_rerio
ENSPREG00000007323	lig4	99	64.654	ENSDNOG00000000513	LIG4	99	64.889	Dasypus_novemcinctus
ENSPREG00000007323	lig4	99	65.055	ENSDORG00000027303	Lig4	99	65.406	Dipodomys_ordii
ENSPREG00000007323	lig4	89	31.140	FBgn0030506	Lig4	86	31.475	Drosophila_melanogaster
ENSPREG00000007323	lig4	98	63.566	ENSETEG00000015563	LIG4	99	63.556	Echinops_telfairi
ENSPREG00000007323	lig4	99	45.026	ENSEBUG00000014243	lig4	98	44.243	Eptatretus_burgeri
ENSPREG00000007323	lig4	99	64.874	ENSEASG00005022073	LIG4	99	64.850	Equus_asinus_asinus
ENSPREG00000007323	lig4	99	64.654	ENSECAG00000003257	LIG4	99	64.627	Equus_caballus
ENSPREG00000007323	lig4	98	82.667	ENSELUG00000006787	lig4	98	82.832	Esox_lucius
ENSPREG00000007323	lig4	98	64.563	ENSFCAG00000031985	LIG4	99	64.627	Felis_catus
ENSPREG00000007323	lig4	88	69.554	ENSFALG00000004214	LIG4	96	70.328	Ficedula_albicollis
ENSPREG00000007323	lig4	99	63.297	ENSFDAG00000008973	LIG4	99	63.404	Fukomys_damarensis
ENSPREG00000007323	lig4	100	91.776	ENSFHEG00000007398	lig4	91	91.228	Fundulus_heteroclitus
ENSPREG00000007323	lig4	86	78.049	ENSGMOG00000012843	lig4	98	78.052	Gadus_morhua
ENSPREG00000007323	lig4	99	65.899	ENSGALG00000016854	LIG4	98	66.518	Gallus_gallus
ENSPREG00000007323	lig4	99	97.250	ENSGAFG00000019779	lig4	96	97.250	Gambusia_affinis
ENSPREG00000007323	lig4	99	83.444	ENSGACG00000014135	lig4	98	83.893	Gasterosteus_aculeatus
ENSPREG00000007323	lig4	99	65.055	ENSGGOG00000027771	LIG4	99	65.406	Gorilla_gorilla
ENSPREG00000007323	lig4	100	87.171	ENSHBUG00000006245	lig4	100	86.842	Haplochromis_burtoni
ENSPREG00000007323	lig4	99	64.066	ENSHGLG00000000718	LIG4	99	64.294	Heterocephalus_glaber_female
ENSPREG00000007323	lig4	99	64.066	ENSHGLG00100003265	LIG4	99	64.294	Heterocephalus_glaber_male
ENSPREG00000007323	lig4	100	81.928	ENSHCOG00000012010	lig4	100	81.818	Hippocampus_comes
ENSPREG00000007323	lig4	100	78.070	ENSIPUG00000013748	lig4	98	78.523	Ictalurus_punctatus
ENSPREG00000007323	lig4	98	65.708	ENSSTOG00000024303	LIG4	99	65.295	Ictidomys_tridecemlineatus
ENSPREG00000007323	lig4	99	63.956	ENSJJAG00000006750	Lig4	99	64.294	Jaculus_jaculus
ENSPREG00000007323	lig4	100	86.404	ENSKMAG00000001149	lig4	100	86.294	Kryptolebias_marmoratus
ENSPREG00000007323	lig4	91	86.094	ENSLBEG00000014578	lig4	100	86.094	Labrus_bergylta
ENSPREG00000007323	lig4	98	68.854	ENSLACG00000003282	LIG4	98	68.380	Latimeria_chalumnae
ENSPREG00000007323	lig4	99	72.707	ENSLOCG00000008901	lig4	97	72.879	Lepisosteus_oculatus
ENSPREG00000007323	lig4	99	64.254	ENSLAFG00000031152	LIG4	99	64.262	Loxodonta_africana
ENSPREG00000007323	lig4	99	65.275	ENSMFAG00000037235	LIG4	99	65.628	Macaca_fascicularis
ENSPREG00000007323	lig4	99	65.055	ENSMMUG00000008874	LIG4	99	65.406	Macaca_mulatta
ENSPREG00000007323	lig4	99	65.275	ENSMNEG00000023575	LIG4	99	65.628	Macaca_nemestrina
ENSPREG00000007323	lig4	99	65.055	ENSMLEG00000026720	LIG4	99	65.406	Mandrillus_leucophaeus
ENSPREG00000007323	lig4	100	88.048	ENSMAMG00000008472	lig4	99	87.610	Mastacembelus_armatus
ENSPREG00000007323	lig4	99	87.377	ENSMZEG00005001855	lig4	100	86.952	Maylandia_zebra
ENSPREG00000007323	lig4	98	66.556	ENSMGAG00000015532	LIG4	98	66.629	Meleagris_gallopavo
ENSPREG00000007323	lig4	99	63.077	ENSMOCG00000019000	Lig4	99	63.404	Microtus_ochrogaster
ENSPREG00000007323	lig4	100	85.526	ENSMMOG00000004390	lig4	100	85.417	Mola_mola
ENSPREG00000007323	lig4	99	65.642	ENSMODG00000025064	LIG4	99	65.889	Monodelphis_domestica
ENSPREG00000007323	lig4	100	87.555	ENSMALG00000008555	lig4	100	87.115	Monopterus_albus
ENSPREG00000007323	lig4	99	63.956	MGP_CAROLIEiJ_G0030809	Lig4	99	64.182	Mus_caroli
ENSPREG00000007323	lig4	99	63.516	ENSMUSG00000049717	Lig4	99	63.737	Mus_musculus
ENSPREG00000007323	lig4	99	64.066	MGP_PahariEiJ_G0021270	Lig4	99	64.294	Mus_pahari
ENSPREG00000007323	lig4	99	63.846	MGP_SPRETEiJ_G0031917	Lig4	99	64.071	Mus_spretus
ENSPREG00000007323	lig4	99	64.984	ENSMPUG00000018675	LIG4	99	64.850	Mustela_putorius_furo
ENSPREG00000007323	lig4	99	65.055	ENSMLUG00000001267	LIG4	99	65.628	Myotis_lucifugus
ENSPREG00000007323	lig4	99	64.396	ENSNGAG00000013258	Lig4	99	64.627	Nannospalax_galili
ENSPREG00000007323	lig4	100	87.281	ENSNBRG00000021252	lig4	100	86.952	Neolamprologus_brichardi
ENSPREG00000007323	lig4	99	64.835	ENSNLEG00000007888	LIG4	99	65.072	Nomascus_leucogenys
ENSPREG00000007323	lig4	99	63.447	ENSOPRG00000005765	LIG4	99	63.515	Ochotona_princeps
ENSPREG00000007323	lig4	99	63.447	ENSODEG00000019683	LIG4	99	63.515	Octodon_degus
ENSPREG00000007323	lig4	99	87.486	ENSONIG00000011969	lig4	99	87.061	Oreochromis_niloticus
ENSPREG00000007323	lig4	99	63.846	ENSOCUG00000015734	LIG4	99	64.182	Oryctolagus_cuniculus
ENSPREG00000007323	lig4	100	83.169	ENSORLG00000004041	lig4	98	84.076	Oryzias_latipes
ENSPREG00000007323	lig4	100	83.607	ENSORLG00020019607	lig4	98	84.521	Oryzias_latipes_hni
ENSPREG00000007323	lig4	100	83.497	ENSORLG00015017754	lig4	98	84.187	Oryzias_latipes_hsok
ENSPREG00000007323	lig4	76	88.841	ENSOMEG00000003459	lig4	100	88.841	Oryzias_melastigma
ENSPREG00000007323	lig4	99	65.027	ENSOGAG00000032120	LIG4	98	65.517	Otolemur_garnettii
ENSPREG00000007323	lig4	82	68.548	ENSOARG00000005590	LIG4	97	69.168	Ovis_aries
ENSPREG00000007323	lig4	99	65.055	ENSPPAG00000032998	LIG4	99	65.406	Pan_paniscus
ENSPREG00000007323	lig4	98	65.116	ENSPPRG00000017804	LIG4	99	65.184	Panthera_pardus
ENSPREG00000007323	lig4	98	65.006	ENSPTIG00000010051	LIG4	99	65.072	Panthera_tigris_altaica
ENSPREG00000007323	lig4	99	65.165	ENSPTRG00000006025	LIG4	99	65.517	Pan_troglodytes
ENSPREG00000007323	lig4	99	65.604	ENSPANG00000007562	LIG4	99	65.628	Papio_anubis
ENSPREG00000007323	lig4	99	78.146	ENSPKIG00000011645	lig4	97	78.523	Paramormyrops_kingsleyae
ENSPREG00000007323	lig4	99	68.357	ENSPSIG00000001504	LIG4	98	69.016	Pelodiscus_sinensis
ENSPREG00000007323	lig4	98	81.180	ENSPMGG00000013486	lig4	100	80.522	Periophthalmus_magnuspinnatus
ENSPREG00000007323	lig4	98	64.049	ENSPEMG00000000076	Lig4	99	63.778	Peromyscus_maniculatus_bairdii
ENSPREG00000007323	lig4	99	64.874	ENSPCIG00000021882	LIG4	99	65.333	Phascolarctos_cinereus
ENSPREG00000007323	lig4	100	98.348	ENSPFOG00000000797	lig4	100	98.348	Poecilia_formosa
ENSPREG00000007323	lig4	100	98.348	ENSPLAG00000001196	lig4	100	98.348	Poecilia_latipinna
ENSPREG00000007323	lig4	100	98.568	ENSPMEG00000021353	lig4	100	98.568	Poecilia_mexicana
ENSPREG00000007323	lig4	99	64.505	ENSPPYG00000005540	LIG4	99	64.850	Pongo_abelii
ENSPREG00000007323	lig4	99	64.544	ENSPVAG00000016403	LIG4	99	64.739	Pteropus_vampyrus
ENSPREG00000007323	lig4	99	87.486	ENSPNYG00000009660	lig4	100	87.061	Pundamilia_nyererei
ENSPREG00000007323	lig4	98	81.960	ENSPNAG00000028056	lig4	99	81.879	Pygocentrus_nattereri
ENSPREG00000007323	lig4	98	81.960	ENSPNAG00000028069	LIG4	99	81.879	Pygocentrus_nattereri
ENSPREG00000007323	lig4	99	63.626	ENSRNOG00000014605	Lig4	99	63.737	Rattus_norvegicus
ENSPREG00000007323	lig4	99	64.396	ENSRBIG00000039962	LIG4	99	64.627	Rhinopithecus_bieti
ENSPREG00000007323	lig4	99	65.055	ENSRROG00000006040	LIG4	99	65.295	Rhinopithecus_roxellana
ENSPREG00000007323	lig4	99	65.093	ENSSBOG00000019029	LIG4	99	65.072	Saimiri_boliviensis_boliviensis
ENSPREG00000007323	lig4	99	63.008	ENSSHAG00000009525	LIG4	99	63.667	Sarcophilus_harrisii
ENSPREG00000007323	lig4	99	78.855	ENSSFOG00015012835	lig4	98	79.306	Scleropages_formosus
ENSPREG00000007323	lig4	100	82.895	ENSSMAG00000011267	lig4	100	82.346	Scophthalmus_maximus
ENSPREG00000007323	lig4	100	87.322	ENSSDUG00000010343	lig4	100	87.104	Seriola_dumerili
ENSPREG00000007323	lig4	100	85.792	ENSSLDG00000003239	lig4	100	85.574	Seriola_lalandi_dorsalis
ENSPREG00000007323	lig4	99	64.466	ENSSARG00000006573	LIG4	99	64.523	Sorex_araneus
ENSPREG00000007323	lig4	92	68.929	ENSSPUG00000002444	LIG4	100	68.690	Sphenodon_punctatus
ENSPREG00000007323	lig4	100	88.596	ENSSPAG00000001609	lig4	100	88.048	Stegastes_partitus
ENSPREG00000007323	lig4	99	64.576	ENSSSCG00000009540	LIG4	99	64.922	Sus_scrofa
ENSPREG00000007323	lig4	98	67.222	ENSTGUG00000010795	LIG4	99	67.299	Taeniopygia_guttata
ENSPREG00000007323	lig4	100	86.513	ENSTRUG00000009984	lig4	100	85.855	Takifugu_rubripes
ENSPREG00000007323	lig4	100	83.662	ENSTNIG00000010348	lig4	100	83.553	Tetraodon_nigroviridis
ENSPREG00000007323	lig4	99	64.764	ENSTBEG00000017741	LIG4	99	64.961	Tupaia_belangeri
ENSPREG00000007323	lig4	99	63.956	ENSTTRG00000012660	LIG4	99	64.405	Tursiops_truncatus
ENSPREG00000007323	lig4	99	64.544	ENSUAMG00000003773	LIG4	99	64.627	Ursus_americanus
ENSPREG00000007323	lig4	98	68.040	ENSXETG00000002654	lig4	98	68.040	Xenopus_tropicalis
ENSPREG00000007323	lig4	100	97.137	ENSXCOG00000017401	lig4	100	97.137	Xiphophorus_couchianus
ENSPREG00000007323	lig4	100	97.577	ENSXMAG00000015142	lig4	99	97.577	Xiphophorus_maculatus