EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPREG00000007481 (Gene tree)
Gene ID: 103469911
Gene Symbol: -
Alias: -
Full Name: RNA exonuclease 1 homolog
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Minus strand
Length: 13349 bases
Position: chrLG9:12692518-12705866
Accession: 103469911
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000011086	RNase_T	PF00929.24	3.1e-06	1	1
ENSPREP00000011022	RNase_T	PF00929.24	3.5e-06	1	1
ENSPREP00000010991	RNase_T	PF00929.24	3.9e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000011118	-	4734	XM_008417968	ENSPREP00000010991	1096 (aa)	XP_008416190	-
ENSPRET00000011213	-	2676	-	ENSPREP00000011086	891 (aa)	-	-
ENSPRET00000011149	-	4581	-	ENSPREP00000011022	1045 (aa)	-	-

Gene Model

Click here to download ENSPREG00000007481's gene model file

Pathways

Pathway ID	Pathway Name	Source
pret03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000007481's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000007481	-	66	74.817	ENSAPOG00000005095	zgc:152968	86	74.817	Acanthochromis_polyacanthus
ENSPREG00000007481	-	83	78.293	ENSACIG00000002527	zgc:152968	98	78.293	Amphilophus_citrinellus
ENSPREG00000007481	-	98	68.293	ENSAOCG00000018049	-	98	72.372	Amphiprion_ocellaris
ENSPREG00000007481	-	93	69.802	ENSAPEG00000012559	zgc:152968	86	69.802	Amphiprion_percula
ENSPREG00000007481	-	99	71.635	ENSACLG00000020524	-	97	79.902	Astatotilapia_calliptera
ENSPREG00000007481	-	84	86.881	ENSCVAG00000015400	zgc:152968	100	86.881	Cyprinodon_variegatus
ENSPREG00000007481	-	83	50.825	ENSDARG00000037002	zgc:152968	72	50.440	Danio_rerio
ENSPREG00000007481	-	98	60.976	ENSELUG00000014272	zgc:152968	77	52.486	Esox_lucius
ENSPREG00000007481	-	98	78.431	ENSFHEG00000003641	-	99	76.190	Fundulus_heteroclitus
ENSPREG00000007481	-	100	86.561	ENSGAFG00000016810	-	100	86.561	Gambusia_affinis
ENSPREG00000007481	-	98	73.657	ENSHBUG00000007524	-	81	73.657	Haplochromis_burtoni
ENSPREG00000007481	-	76	54.086	ENSIPUG00000004633	zgc:152968	75	63.835	Ictalurus_punctatus
ENSPREG00000007481	-	85	68.136	ENSLBEG00000026485	zgc:152968	99	68.938	Labrus_bergylta
ENSPREG00000007481	-	98	62.785	ENSMAMG00000005920	-	89	62.785	Mastacembelus_armatus
ENSPREG00000007481	-	99	71.394	ENSMZEG00005013783	-	97	78.922	Maylandia_zebra
ENSPREG00000007481	-	87	79.024	ENSMMOG00000018072	zgc:152968	94	75.795	Mola_mola
ENSPREG00000007481	-	78	69.388	ENSMALG00000003536	-	82	69.388	Monopterus_albus
ENSPREG00000007481	-	99	72.840	ENSONIG00000016897	-	88	72.840	Oreochromis_niloticus
ENSPREG00000007481	-	81	62.840	ENSORLG00020012504	-	88	61.836	Oryzias_latipes_hni
ENSPREG00000007481	-	79	56.212	ENSOMEG00000008840	-	85	73.697	Oryzias_melastigma
ENSPREG00000007481	-	100	91.038	ENSPFOG00000006104	-	100	91.038	Poecilia_formosa
ENSPREG00000007481	-	100	90.892	ENSPLAG00000005034	-	100	90.892	Poecilia_latipinna
ENSPREG00000007481	-	100	90.861	ENSPMEG00000018012	-	100	90.861	Poecilia_mexicana
ENSPREG00000007481	-	61	48.848	ENSSFOG00015023869	zgc:152968	62	60.922	Scleropages_formosus
ENSPREG00000007481	-	98	69.682	ENSSMAG00000008149	-	100	53.169	Scophthalmus_maximus
ENSPREG00000007481	-	98	72.127	ENSSDUG00000022323	-	84	76.023	Seriola_dumerili
ENSPREG00000007481	-	87	58.043	ENSSLDG00000018799	zgc:152968	98	48.496	Seriola_lalandi_dorsalis
ENSPREG00000007481	-	89	72.236	ENSSPAG00000007632	-	95	71.128	Stegastes_partitus
ENSPREG00000007481	-	98	68.949	ENSTRUG00000025441	zgc:152968	84	67.780	Takifugu_rubripes
ENSPREG00000007481	-	100	86.484	ENSXMAG00000026483	-	100	86.484	Xiphophorus_maculatus