EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPREG00000007751 (Gene tree)
Gene ID: 103469189
Gene Symbol: srl
Alias: -
Full Name: sarcalumenin
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Minus strand
Length: 15860 bases
Position: chrLG8:24619014-24634873
Accession: 103469189
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000011407	MMR_HSR1	PF01926.23	1.8e-08	1	1
ENSPREP00000011377	MMR_HSR1	PF01926.23	2.3e-08	1	1
ENSPREP00000011391	MMR_HSR1	PF01926.23	2.3e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000011504	-	1596	XM_008416704	ENSPREP00000011377	531 (aa)	XP_008414926	-
ENSPRET00000011534	-	1356	-	ENSPREP00000011407	451 (aa)	-	-
ENSPRET00000011517	-	1560	XM_008416705	ENSPREP00000011391	519 (aa)	XP_008414927	-

Gene Model

Click here to download ENSPREG00000007751's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000007751's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPREG00000007751	srl	91	34.223	ENSPREG00000016332	ehd2b	74	34.223
ENSPREG00000007751	srl	90	32.099	ENSPREG00000015893	ehd1a	73	32.099
ENSPREG00000007751	srl	82	33.512	ENSPREG00000012884	ehd3	69	33.766
ENSPREG00000007751	srl	89	31.841	ENSPREG00000017608	ehd2a	71	31.841
ENSPREG00000007751	srl	99	77.902	ENSPREG00000000315	SRL	99	77.902
ENSPREG00000007751	srl	87	32.911	ENSPREG00000003513	ehd4	70	32.911

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000007751	srl	100	81.596	ENSG00000185739	SRL	99	83.023	Homo_sapiens
ENSPREG00000007751	srl	99	95.556	ENSAPOG00000018093	srl	100	95.117	Acanthochromis_polyacanthus
ENSPREG00000007751	srl	98	77.602	ENSAPOG00000012432	SRL	99	77.427	Acanthochromis_polyacanthus
ENSPREG00000007751	srl	99	81.416	ENSAMEG00000010862	SRL	51	81.416	Ailuropoda_melanoleuca
ENSPREG00000007751	srl	99	95.556	ENSACIG00000015799	srl	99	95.556	Amphilophus_citrinellus
ENSPREG00000007751	srl	99	75.893	ENSACIG00000015419	SRL	99	75.893	Amphilophus_citrinellus
ENSPREG00000007751	srl	98	77.703	ENSAOCG00000017049	SRL	97	77.928	Amphiprion_ocellaris
ENSPREG00000007751	srl	96	96.313	ENSAOCG00000007574	srl	100	96.313	Amphiprion_ocellaris
ENSPREG00000007751	srl	98	74.492	ENSAPEG00000006533	SRL	96	75.000	Amphiprion_percula
ENSPREG00000007751	srl	99	95.778	ENSAPEG00000006911	srl	100	95.445	Amphiprion_percula
ENSPREG00000007751	srl	98	77.193	ENSATEG00000009643	SRL	57	73.239	Anabas_testudineus
ENSPREG00000007751	srl	99	96.413	ENSATEG00000024315	srl	100	95.238	Anabas_testudineus
ENSPREG00000007751	srl	98	82.561	ENSACAG00000016380	SRL	90	80.894	Anolis_carolinensis
ENSPREG00000007751	srl	99	95.982	ENSACLG00000027685	srl	100	95.031	Astatotilapia_calliptera
ENSPREG00000007751	srl	99	74.730	ENSACLG00000024674	SRL	58	74.730	Astatotilapia_calliptera
ENSPREG00000007751	srl	99	91.556	ENSAMXG00000018789	srl	97	88.515	Astyanax_mexicanus
ENSPREG00000007751	srl	93	79.048	ENSAMXG00000038693	SRL	100	75.055	Astyanax_mexicanus
ENSPREG00000007751	srl	98	83.108	ENSBTAG00000001078	SRL	57	82.119	Bos_taurus
ENSPREG00000007751	srl	98	82.805	ENSCJAG00000019750	SRL	100	79.493	Callithrix_jacchus
ENSPREG00000007751	srl	99	82.022	ENSCAFG00000019233	SRL	85	80.963	Canis_familiaris
ENSPREG00000007751	srl	99	81.457	ENSCAFG00020025024	SRL	56	81.457	Canis_lupus_dingo
ENSPREG00000007751	srl	98	83.108	ENSCHIG00000017927	SRL	57	82.119	Capra_hircus
ENSPREG00000007751	srl	99	82.697	ENSTSYG00000007919	SRL	99	83.721	Carlito_syrichta
ENSPREG00000007751	srl	99	82.472	ENSCPOG00000012643	SRL	100	79.661	Cavia_porcellus
ENSPREG00000007751	srl	98	77.602	ENSCCAG00000032646	SRL	100	84.433	Cebus_capucinus
ENSPREG00000007751	srl	100	81.596	ENSCATG00000032227	-	100	79.493	Cercocebus_atys
ENSPREG00000007751	srl	99	82.697	ENSCLAG00000016242	SRL	100	79.873	Chinchilla_lanigera
ENSPREG00000007751	srl	85	85.974	ENSCHOG00000001618	SRL	52	85.974	Choloepus_hoffmanni
ENSPREG00000007751	srl	98	86.010	ENSCPBG00000026371	SRL	99	80.331	Chrysemys_picta_bellii
ENSPREG00000007751	srl	92	60.671	ENSCING00000005231	-	93	60.671	Ciona_intestinalis
ENSPREG00000007751	srl	100	81.596	ENSCANG00000035872	SRL	99	83.023	Colobus_angolensis_palliatus
ENSPREG00000007751	srl	99	83.371	ENSCGRG00001016630	Srl	100	80.508	Cricetulus_griseus_chok1gshd
ENSPREG00000007751	srl	99	83.371	ENSCGRG00000005458	Srl	100	80.508	Cricetulus_griseus_crigri
ENSPREG00000007751	srl	100	94.457	ENSCSEG00000016151	srl	100	94.043	Cynoglossus_semilaevis
ENSPREG00000007751	srl	98	75.901	ENSCSEG00000011866	SRL	95	72.152	Cynoglossus_semilaevis
ENSPREG00000007751	srl	100	97.118	ENSCVAG00000003513	srl	100	96.888	Cyprinodon_variegatus
ENSPREG00000007751	srl	99	76.304	ENSCVAG00000022465	SRL	61	76.356	Cyprinodon_variegatus
ENSPREG00000007751	srl	99	92.601	ENSDARG00000104587	srl	100	90.683	Danio_rerio
ENSPREG00000007751	srl	84	78.385	ENSDARG00000112959	CABZ01072309.1	100	78.385	Danio_rerio
ENSPREG00000007751	srl	99	82.472	ENSDNOG00000011643	SRL	54	81.498	Dasypus_novemcinctus
ENSPREG00000007751	srl	99	83.146	ENSDORG00000014807	Srl	100	80.297	Dipodomys_ordii
ENSPREG00000007751	srl	82	66.043	ENSEBUG00000015937	srl	94	66.043	Eptatretus_burgeri
ENSPREG00000007751	srl	98	82.658	ENSEASG00005000942	SRL	55	81.678	Equus_asinus_asinus
ENSPREG00000007751	srl	98	82.658	ENSECAG00000024219	SRL	99	79.873	Equus_caballus
ENSPREG00000007751	srl	98	87.555	ENSELUG00000015616	srl	100	86.858	Esox_lucius
ENSPREG00000007751	srl	98	82.353	ENSFCAG00000022075	SRL	100	79.281	Felis_catus
ENSPREG00000007751	srl	98	83.409	ENSFALG00000004328	SRL	63	83.409	Ficedula_albicollis
ENSPREG00000007751	srl	99	83.371	ENSFDAG00000006199	SRL	100	80.720	Fukomys_damarensis
ENSPREG00000007751	srl	98	77.477	ENSFHEG00000011854	SRL	99	77.703	Fundulus_heteroclitus
ENSPREG00000007751	srl	100	97.561	ENSFHEG00000011239	srl	100	97.510	Fundulus_heteroclitus
ENSPREG00000007751	srl	98	88.987	ENSGMOG00000014954	srl	100	91.189	Gadus_morhua
ENSPREG00000007751	srl	98	83.636	ENSGALG00000038884	SRL	99	80.679	Gallus_gallus
ENSPREG00000007751	srl	100	99.335	ENSGAFG00000000010	srl	100	99.378	Gambusia_affinis
ENSPREG00000007751	srl	99	78.571	ENSGAFG00000016984	SRL	99	78.571	Gambusia_affinis
ENSPREG00000007751	srl	98	92.308	ENSGACG00000011332	srl	100	94.725	Gasterosteus_aculeatus
ENSPREG00000007751	srl	100	81.596	ENSGGOG00000011312	-	100	79.493	Gorilla_gorilla
ENSPREG00000007751	srl	99	75.162	ENSHBUG00000015710	SRL	58	75.162	Haplochromis_burtoni
ENSPREG00000007751	srl	99	95.982	ENSHBUG00000007581	srl	100	95.031	Haplochromis_burtoni
ENSPREG00000007751	srl	99	83.146	ENSHGLG00000015271	SRL	100	80.297	Heterocephalus_glaber_female
ENSPREG00000007751	srl	99	83.146	ENSHGLG00100019378	SRL	100	80.297	Heterocephalus_glaber_male
ENSPREG00000007751	srl	99	95.536	ENSHCOG00000008687	srl	99	95.536	Hippocampus_comes
ENSPREG00000007751	srl	98	75.604	ENSHCOG00000001012	SRL	50	75.604	Hippocampus_comes
ENSPREG00000007751	srl	99	91.778	ENSIPUG00000012513	srl	100	90.476	Ictalurus_punctatus
ENSPREG00000007751	srl	97	70.872	ENSIPUG00000011609	SRL	95	70.872	Ictalurus_punctatus
ENSPREG00000007751	srl	99	82.921	ENSSTOG00000021151	-	100	79.873	Ictidomys_tridecemlineatus
ENSPREG00000007751	srl	99	83.596	ENSJJAG00000016400	Srl	100	80.932	Jaculus_jaculus
ENSPREG00000007751	srl	98	77.551	ENSKMAG00000019537	SRL	100	77.551	Kryptolebias_marmoratus
ENSPREG00000007751	srl	98	95.918	ENSKMAG00000014115	srl	95	95.763	Kryptolebias_marmoratus
ENSPREG00000007751	srl	98	76.471	ENSLBEG00000013811	SRL	95	76.697	Labrus_bergylta
ENSPREG00000007751	srl	98	96.171	ENSLBEG00000026643	srl	100	94.268	Labrus_bergylta
ENSPREG00000007751	srl	99	83.814	ENSLACG00000002825	SRL	100	83.850	Latimeria_chalumnae
ENSPREG00000007751	srl	98	89.616	ENSLOCG00000002644	srl	94	89.616	Lepisosteus_oculatus
ENSPREG00000007751	srl	98	82.579	ENSLAFG00000006329	SRL	50	82.579	Loxodonta_africana
ENSPREG00000007751	srl	95	83.023	ENSMFAG00000037383	SRL	99	83.023	Macaca_fascicularis
ENSPREG00000007751	srl	100	81.596	ENSMNEG00000019236	-	95	81.596	Macaca_nemestrina
ENSPREG00000007751	srl	100	74.945	ENSMLEG00000032156	SRL	100	73.150	Mandrillus_leucophaeus
ENSPREG00000007751	srl	98	76.211	ENSMAMG00000013756	SRL	53	76.211	Mastacembelus_armatus
ENSPREG00000007751	srl	98	95.946	ENSMAMG00000023322	srl	96	95.556	Mastacembelus_armatus
ENSPREG00000007751	srl	99	74.946	ENSMZEG00005004010	SRL	58	74.946	Maylandia_zebra
ENSPREG00000007751	srl	99	95.982	ENSMZEG00005004548	srl	100	95.031	Maylandia_zebra
ENSPREG00000007751	srl	98	83.409	ENSMGAG00000009342	SRL	96	84.169	Meleagris_gallopavo
ENSPREG00000007751	srl	98	83.070	ENSMICG00000032307	SRL	100	80.127	Microcebus_murinus
ENSPREG00000007751	srl	99	82.697	ENSMOCG00000008208	Srl	100	79.873	Microtus_ochrogaster
ENSPREG00000007751	srl	99	93.778	ENSMMOG00000013970	srl	100	93.778	Mola_mola
ENSPREG00000007751	srl	98	75.165	ENSMMOG00000021572	SRL	99	75.165	Mola_mola
ENSPREG00000007751	srl	98	83.559	ENSMODG00000016380	-	50	83.559	Monodelphis_domestica
ENSPREG00000007751	srl	100	94.457	ENSMALG00000005039	srl	99	94.866	Monopterus_albus
ENSPREG00000007751	srl	93	78.043	ENSMALG00000000670	SRL	98	78.043	Monopterus_albus
ENSPREG00000007751	srl	99	84.045	MGP_CAROLIEiJ_G0020400	Srl	100	81.568	Mus_caroli
ENSPREG00000007751	srl	99	84.045	ENSMUSG00000022519	Srl	100	81.568	Mus_musculus
ENSPREG00000007751	srl	99	84.045	MGP_SPRETEiJ_G0021294	Srl	100	81.568	Mus_spretus
ENSPREG00000007751	srl	99	82.022	ENSMPUG00000015025	SRL	54	82.022	Mustela_putorius_furo
ENSPREG00000007751	srl	99	82.921	ENSMLUG00000030733	SRL	56	82.921	Myotis_lucifugus
ENSPREG00000007751	srl	99	83.820	ENSNGAG00000019741	Srl	100	80.932	Nannospalax_galili
ENSPREG00000007751	srl	99	96.000	ENSNBRG00000023775	srl	100	95.117	Neolamprologus_brichardi
ENSPREG00000007751	srl	99	74.298	ENSNBRG00000002422	SRL	56	76.389	Neolamprologus_brichardi
ENSPREG00000007751	srl	100	76.275	ENSNLEG00000029051	SRL	100	74.207	Nomascus_leucogenys
ENSPREG00000007751	srl	99	76.854	ENSOPRG00000000477	-	53	75.991	Ochotona_princeps
ENSPREG00000007751	srl	100	82.483	ENSODEG00000013256	SRL	100	80.085	Octodon_degus
ENSPREG00000007751	srl	99	95.778	ENSONIG00000005192	srl	100	95.031	Oreochromis_niloticus
ENSPREG00000007751	srl	98	82.579	ENSOCUG00000025140	SRL	50	80.963	Oryctolagus_cuniculus
ENSPREG00000007751	srl	100	95.787	ENSORLG00000008291	srl	100	97.165	Oryzias_latipes
ENSPREG00000007751	srl	98	75.621	ENSORLG00000015064	SRL	97	75.621	Oryzias_latipes
ENSPREG00000007751	srl	100	95.787	ENSORLG00020019784	srl	90	96.183	Oryzias_latipes_hni
ENSPREG00000007751	srl	98	75.847	ENSORLG00020018173	SRL	97	75.847	Oryzias_latipes_hni
ENSPREG00000007751	srl	100	95.787	ENSORLG00015009342	srl	100	94.779	Oryzias_latipes_hsok
ENSPREG00000007751	srl	98	75.847	ENSORLG00015019063	SRL	97	75.847	Oryzias_latipes_hsok
ENSPREG00000007751	srl	98	74.342	ENSOMEG00000005682	SRL	53	74.617	Oryzias_melastigma
ENSPREG00000007751	srl	100	95.787	ENSOMEG00000010006	srl	100	95.643	Oryzias_melastigma
ENSPREG00000007751	srl	99	82.247	ENSOGAG00000029266	SRL	55	81.278	Otolemur_garnettii
ENSPREG00000007751	srl	98	83.108	ENSOARG00000003074	SRL	56	83.108	Ovis_aries
ENSPREG00000007751	srl	100	81.596	ENSPPAG00000024919	-	99	83.023	Pan_paniscus
ENSPREG00000007751	srl	98	82.353	ENSPPRG00000010274	SRL	99	82.791	Panthera_pardus
ENSPREG00000007751	srl	98	82.353	ENSPTIG00000015162	SRL	99	82.791	Panthera_tigris_altaica
ENSPREG00000007751	srl	100	81.596	ENSPTRG00000007712	SRL	99	83.023	Pan_troglodytes
ENSPREG00000007751	srl	100	81.596	ENSPANG00000013804	SRL	98	81.099	Papio_anubis
ENSPREG00000007751	srl	98	80.180	ENSPKIG00000024974	SRL	97	77.096	Paramormyrops_kingsleyae
ENSPREG00000007751	srl	99	91.518	ENSPKIG00000006405	srl	100	89.506	Paramormyrops_kingsleyae
ENSPREG00000007751	srl	98	82.883	ENSPSIG00000008586	SRL	50	82.883	Pelodiscus_sinensis
ENSPREG00000007751	srl	98	95.475	ENSPMGG00000021081	srl	95	95.475	Periophthalmus_magnuspinnatus
ENSPREG00000007751	srl	98	76.244	ENSPMGG00000023505	-	99	76.244	Periophthalmus_magnuspinnatus
ENSPREG00000007751	srl	99	82.921	ENSPEMG00000015842	Srl	100	80.297	Peromyscus_maniculatus_bairdii
ENSPREG00000007751	srl	93	67.890	ENSPMAG00000004786	srl	99	68.421	Petromyzon_marinus
ENSPREG00000007751	srl	98	83.108	ENSPCIG00000012128	SRL	97	83.108	Phascolarctos_cinereus
ENSPREG00000007751	srl	100	96.976	ENSPFOG00000011408	srl	100	99.604	Poecilia_formosa
ENSPREG00000007751	srl	99	77.009	ENSPLAG00000002932	SRL	99	77.009	Poecilia_latipinna
ENSPREG00000007751	srl	99	99.778	ENSPLAG00000008017	srl	98	99.778	Poecilia_latipinna
ENSPREG00000007751	srl	100	99.557	ENSPMEG00000006745	srl	100	99.594	Poecilia_mexicana
ENSPREG00000007751	srl	99	75.594	ENSPMEG00000005890	SRL	61	75.162	Poecilia_mexicana
ENSPREG00000007751	srl	93	84.487	ENSPPYG00000007053	SRL	98	84.487	Pongo_abelii
ENSPREG00000007751	srl	98	83.673	ENSPCAG00000003378	-	50	83.673	Procavia_capensis
ENSPREG00000007751	srl	98	83.070	ENSPCOG00000023135	SRL	99	83.721	Propithecus_coquereli
ENSPREG00000007751	srl	99	82.697	ENSPVAG00000006586	SRL	55	82.697	Pteropus_vampyrus
ENSPREG00000007751	srl	99	95.759	ENSPNYG00000001200	srl	100	94.824	Pundamilia_nyererei
ENSPREG00000007751	srl	99	74.946	ENSPNYG00000003423	SRL	58	74.946	Pundamilia_nyererei
ENSPREG00000007751	srl	99	91.111	ENSPNAG00000023106	srl	100	89.419	Pygocentrus_nattereri
ENSPREG00000007751	srl	98	76.871	ENSPNAG00000007361	-	91	76.871	Pygocentrus_nattereri
ENSPREG00000007751	srl	99	83.371	ENSRNOG00000005269	Srl	50	82.379	Rattus_norvegicus
ENSPREG00000007751	srl	100	81.596	ENSRBIG00000042358	SRL	50	81.596	Rhinopithecus_bieti
ENSPREG00000007751	srl	98	82.805	ENSSBOG00000029273	SRL	100	79.493	Saimiri_boliviensis_boliviensis
ENSPREG00000007751	srl	98	83.333	ENSSHAG00000011715	-	50	83.333	Sarcophilus_harrisii
ENSPREG00000007751	srl	98	91.892	ENSSFOG00015009773	srl	100	89.485	Scleropages_formosus
ENSPREG00000007751	srl	98	77.703	ENSSFOG00015021327	SRL	50	77.455	Scleropages_formosus
ENSPREG00000007751	srl	98	75.165	ENSSMAG00000002232	SRL	50	75.165	Scophthalmus_maximus
ENSPREG00000007751	srl	99	94.420	ENSSMAG00000016274	srl	100	93.843	Scophthalmus_maximus
ENSPREG00000007751	srl	98	77.778	ENSSDUG00000009161	SRL	99	77.778	Seriola_dumerili
ENSPREG00000007751	srl	98	96.847	ENSSDUG00000010808	srl	98	96.847	Seriola_dumerili
ENSPREG00000007751	srl	100	95.787	ENSSLDG00000022024	srl	100	95.228	Seriola_lalandi_dorsalis
ENSPREG00000007751	srl	98	77.511	ENSSLDG00000014601	SRL	100	78.070	Seriola_lalandi_dorsalis
ENSPREG00000007751	srl	99	82.301	ENSSPUG00000016859	SRL	99	82.301	Sphenodon_punctatus
ENSPREG00000007751	srl	99	95.778	ENSSPAG00000019105	srl	100	95.041	Stegastes_partitus
ENSPREG00000007751	srl	98	79.138	ENSSPAG00000014254	SRL	98	79.138	Stegastes_partitus
ENSPREG00000007751	srl	98	82.432	ENSSSCG00000007949	SRL	99	82.432	Sus_scrofa
ENSPREG00000007751	srl	80	86.188	ENSTGUG00000016121	-	100	86.188	Taeniopygia_guttata
ENSPREG00000007751	srl	98	83.636	ENSTGUG00000003951	-	97	83.636	Taeniopygia_guttata
ENSPREG00000007751	srl	93	78.282	ENSTRUG00000013310	SRL	55	78.282	Takifugu_rubripes
ENSPREG00000007751	srl	100	94.900	ENSTRUG00000006005	srl	100	94.468	Takifugu_rubripes
ENSPREG00000007751	srl	100	94.678	ENSTNIG00000009739	srl	100	93.617	Tetraodon_nigroviridis
ENSPREG00000007751	srl	99	81.416	ENSUAMG00000005701	SRL	56	81.416	Ursus_americanus
ENSPREG00000007751	srl	99	81.416	ENSUMAG00000002574	SRL	56	81.416	Ursus_maritimus
ENSPREG00000007751	srl	99	81.457	ENSVVUG00000016331	-	50	81.457	Vulpes_vulpes
ENSPREG00000007751	srl	99	82.022	ENSXETG00000017313	srl	99	82.022	Xenopus_tropicalis
ENSPREG00000007751	srl	93	99.050	ENSXCOG00000010424	srl	97	99.050	Xiphophorus_couchianus
ENSPREG00000007751	srl	100	78.271	ENSXCOG00000014584	SRL	100	78.271	Xiphophorus_couchianus
ENSPREG00000007751	srl	100	99.335	ENSXMAG00000004625	srl	100	99.208	Xiphophorus_maculatus
ENSPREG00000007751	srl	99	75.810	ENSXMAG00000027598	SRL	63	75.810	Xiphophorus_maculatus