EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPREG00000007786 (Gene tree)
Gene ID: 103476389
Gene Symbol: pspc1
Alias: fj85a06|wu:fj85a06|zgc:136470
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Minus strand
Length: 14721 bases
Position: chrLG2:1397356-1412076
Accession: 103476389
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000011413	RRM_1	PF00076.22	7.2e-32	1	2
ENSPREP00000011413	RRM_1	PF00076.22	7.2e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000011542	-	2473	XM_008428701	ENSPREP00000011413	517 (aa)	XP_008426923	UPI0004A2C7C3

Gene Model

Click here to download ENSPREG00000007786's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000007786's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPREG00000007786	pspc1	71	62.228	ENSPREG00000010014	nono	87	56.235
ENSPREG00000007786	pspc1	62	59.692	ENSPREG00000008060	sfpq	60	54.139

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000007786	pspc1	87	67.653	ENSG00000121390	PSPC1	92	71.123	Homo_sapiens
ENSPREG00000007786	pspc1	100	79.735	ENSAPOG00000015946	pspc1	100	78.788	Acanthochromis_polyacanthus
ENSPREG00000007786	pspc1	93	65.538	ENSAMEG00000017420	PSPC1	93	66.600	Ailuropoda_melanoleuca
ENSPREG00000007786	pspc1	100	72.381	ENSACIG00000018695	pspc1	100	71.429	Amphilophus_citrinellus
ENSPREG00000007786	pspc1	100	80.000	ENSAOCG00000005279	pspc1	100	79.434	Amphiprion_ocellaris
ENSPREG00000007786	pspc1	100	80.455	ENSAPEG00000015927	pspc1	100	79.886	Amphiprion_percula
ENSPREG00000007786	pspc1	100	67.675	ENSATEG00000004878	pspc1	100	65.217	Anabas_testudineus
ENSPREG00000007786	pspc1	74	61.168	ENSAPLG00000003643	SFPQ	83	54.803	Anas_platyrhynchos
ENSPREG00000007786	pspc1	75	66.912	ENSAPLG00000006246	PSPC1	99	67.726	Anas_platyrhynchos
ENSPREG00000007786	pspc1	68	57.300	ENSACAG00000013307	-	65	52.887	Anolis_carolinensis
ENSPREG00000007786	pspc1	90	64.315	ENSACAG00000002093	PSPC1	99	61.566	Anolis_carolinensis
ENSPREG00000007786	pspc1	87	67.653	ENSANAG00000000059	PSPC1	97	66.240	Aotus_nancymaae
ENSPREG00000007786	pspc1	100	72.031	ENSACLG00000027220	pspc1	100	70.667	Astatotilapia_calliptera
ENSPREG00000007786	pspc1	100	64.060	ENSAMXG00000036881	pspc1	100	64.618	Astyanax_mexicanus
ENSPREG00000007786	pspc1	99	63.246	ENSBTAG00000003934	PSPC1	99	63.602	Bos_taurus
ENSPREG00000007786	pspc1	87	67.653	ENSCJAG00000004554	PSPC1	95	65.613	Callithrix_jacchus
ENSPREG00000007786	pspc1	87	67.653	ENSCAFG00020002009	PSPC1	97	69.018	Canis_lupus_dingo
ENSPREG00000007786	pspc1	99	63.246	ENSCHIG00000016708	PSPC1	99	63.602	Capra_hircus
ENSPREG00000007786	pspc1	76	61.045	ENSTSYG00000032882	PSPC1	90	60.238	Carlito_syrichta
ENSPREG00000007786	pspc1	87	67.442	ENSCPOG00000000395	PSPC1	97	68.286	Cavia_porcellus
ENSPREG00000007786	pspc1	87	67.653	ENSCCAG00000033498	PSPC1	95	65.810	Cebus_capucinus
ENSPREG00000007786	pspc1	87	67.442	ENSCATG00000036434	PSPC1	96	73.130	Cercocebus_atys
ENSPREG00000007786	pspc1	77	66.667	ENSCLAG00000005241	PSPC1	92	67.696	Chinchilla_lanigera
ENSPREG00000007786	pspc1	92	61.943	ENSCHOG00000008913	PSPC1	92	63.692	Choloepus_hoffmanni
ENSPREG00000007786	pspc1	87	66.809	ENSCPBG00000020859	PSPC1	88	67.728	Chrysemys_picta_bellii
ENSPREG00000007786	pspc1	60	57.282	ENSCSAVG00000003533	-	53	60.432	Ciona_savignyi
ENSPREG00000007786	pspc1	80	54.608	ENSCANG00000018948	PSPC1	87	79.026	Colobus_angolensis_palliatus
ENSPREG00000007786	pspc1	92	65.517	ENSCGRG00001018368	Pspc1	92	67.004	Cricetulus_griseus_chok1gshd
ENSPREG00000007786	pspc1	92	65.517	ENSCGRG00000011724	Pspc1	92	67.004	Cricetulus_griseus_crigri
ENSPREG00000007786	pspc1	100	83.397	ENSCVAG00000007679	-	100	82.634	Cyprinodon_variegatus
ENSPREG00000007786	pspc1	100	59.774	ENSDARG00000006621	pspc1	100	64.216	Danio_rerio
ENSPREG00000007786	pspc1	87	67.925	ENSDNOG00000011078	PSPC1	95	65.564	Dasypus_novemcinctus
ENSPREG00000007786	pspc1	96	62.115	ENSDORG00000016050	Pspc1	92	64.800	Dipodomys_ordii
ENSPREG00000007786	pspc1	91	54.635	ENSEBUG00000003964	-	72	61.042	Eptatretus_burgeri
ENSPREG00000007786	pspc1	58	45.820	ENSEBUG00000010133	pspc1	76	48.621	Eptatretus_burgeri
ENSPREG00000007786	pspc1	99	62.894	ENSEASG00005000119	PSPC1	92	71.011	Equus_asinus_asinus
ENSPREG00000007786	pspc1	99	62.894	ENSECAG00000017286	PSPC1	92	71.011	Equus_caballus
ENSPREG00000007786	pspc1	50	67.692	ENSEEUG00000011288	-	56	63.265	Erinaceus_europaeus
ENSPREG00000007786	pspc1	100	65.385	ENSELUG00000003746	pspc1	100	65.385	Esox_lucius
ENSPREG00000007786	pspc1	99	62.617	ENSFCAG00000027841	PSPC1	97	69.270	Felis_catus
ENSPREG00000007786	pspc1	87	66.596	ENSFALG00000008750	PSPC1	99	61.781	Ficedula_albicollis
ENSPREG00000007786	pspc1	91	66.463	ENSFDAG00000002617	PSPC1	94	67.551	Fukomys_damarensis
ENSPREG00000007786	pspc1	100	61.407	ENSGMOG00000015074	pspc1	100	61.742	Gadus_morhua
ENSPREG00000007786	pspc1	87	66.809	ENSGALG00000017142	PSPC1	90	66.736	Gallus_gallus
ENSPREG00000007786	pspc1	76	94.430	ENSGAFG00000006327	pspc1	81	94.430	Gambusia_affinis
ENSPREG00000007786	pspc1	100	73.654	ENSGACG00000014901	pspc1	99	77.374	Gasterosteus_aculeatus
ENSPREG00000007786	pspc1	91	56.695	ENSGAGG00000017325	-	69	54.184	Gopherus_agassizii
ENSPREG00000007786	pspc1	87	66.809	ENSGAGG00000019164	PSPC1	88	67.728	Gopherus_agassizii
ENSPREG00000007786	pspc1	87	67.653	ENSGGOG00000003414	PSPC1	92	71.123	Gorilla_gorilla
ENSPREG00000007786	pspc1	100	80.651	ENSHBUG00000001139	pspc1	100	81.034	Haplochromis_burtoni
ENSPREG00000007786	pspc1	99	63.148	ENSHGLG00000018811	PSPC1	89	69.002	Heterocephalus_glaber_female
ENSPREG00000007786	pspc1	59	74.919	ENSHGLG00100007962	PSPC1	93	75.410	Heterocephalus_glaber_male
ENSPREG00000007786	pspc1	81	75.476	ENSHCOG00000013251	pspc1	96	72.045	Hippocampus_comes
ENSPREG00000007786	pspc1	100	65.112	ENSIPUG00000013192	pspc1	100	65.672	Ictalurus_punctatus
ENSPREG00000007786	pspc1	91	65.731	ENSSTOG00000026833	PSPC1	97	68.957	Ictidomys_tridecemlineatus
ENSPREG00000007786	pspc1	87	67.442	ENSJJAG00000018334	Pspc1	92	66.397	Jaculus_jaculus
ENSPREG00000007786	pspc1	100	61.731	ENSKMAG00000013525	-	98	73.770	Kryptolebias_marmoratus
ENSPREG00000007786	pspc1	99	72.542	ENSLBEG00000004474	pspc1	100	71.800	Labrus_bergylta
ENSPREG00000007786	pspc1	79	67.517	ENSLACG00000010762	PSPC1	100	60.741	Latimeria_chalumnae
ENSPREG00000007786	pspc1	100	64.378	ENSLOCG00000010832	pspc1	99	64.991	Lepisosteus_oculatus
ENSPREG00000007786	pspc1	92	66.194	ENSLAFG00000010968	PSPC1	92	67.206	Loxodonta_africana
ENSPREG00000007786	pspc1	87	67.442	ENSMFAG00000032728	PSPC1	97	73.204	Macaca_fascicularis
ENSPREG00000007786	pspc1	87	67.442	ENSMMUG00000020262	PSPC1	94	73.130	Macaca_mulatta
ENSPREG00000007786	pspc1	87	67.442	ENSMNEG00000027401	PSPC1	93	66.402	Macaca_nemestrina
ENSPREG00000007786	pspc1	75	67.397	ENSMLEG00000039043	PSPC1	94	69.193	Mandrillus_leucophaeus
ENSPREG00000007786	pspc1	100	75.419	ENSMAMG00000004333	pspc1	100	75.047	Mastacembelus_armatus
ENSPREG00000007786	pspc1	100	72.031	ENSMZEG00005005726	pspc1	100	70.667	Maylandia_zebra
ENSPREG00000007786	pspc1	76	66.184	ENSMGAG00000015134	PSPC1	100	66.988	Meleagris_gallopavo
ENSPREG00000007786	pspc1	88	60.470	ENSMAUG00000021067	Pspc1	98	59.072	Mesocricetus_auratus
ENSPREG00000007786	pspc1	92	67.339	ENSMICG00000013970	PSPC1	97	68.182	Microcebus_murinus
ENSPREG00000007786	pspc1	92	65.314	ENSMOCG00000006060	Pspc1	92	66.802	Microtus_ochrogaster
ENSPREG00000007786	pspc1	82	75.000	ENSMMOG00000004352	pspc1	65	50.630	Mola_mola
ENSPREG00000007786	pspc1	83	69.910	ENSMODG00000008029	PSPC1	71	68.192	Monodelphis_domestica
ENSPREG00000007786	pspc1	100	79.497	ENSMALG00000008914	pspc1	100	79.497	Monopterus_albus
ENSPREG00000007786	pspc1	92	65.517	MGP_CAROLIEiJ_G0019341	Pspc1	90	69.838	Mus_caroli
ENSPREG00000007786	pspc1	92	65.720	ENSMUSG00000021938	Pspc1	90	69.838	Mus_musculus
ENSPREG00000007786	pspc1	92	65.594	MGP_PahariEiJ_G0030359	Pspc1	90	69.838	Mus_pahari
ENSPREG00000007786	pspc1	92	65.720	MGP_SPRETEiJ_G0020232	Pspc1	90	69.838	Mus_spretus
ENSPREG00000007786	pspc1	87	67.653	ENSMPUG00000013347	PSPC1	99	63.873	Mustela_putorius_furo
ENSPREG00000007786	pspc1	87	68.565	ENSMLUG00000017663	PSPC1	92	67.197	Myotis_lucifugus
ENSPREG00000007786	pspc1	92	65.988	ENSNGAG00000011271	Pspc1	92	66.599	Nannospalax_galili
ENSPREG00000007786	pspc1	76	75.758	ENSNBRG00000014059	pspc1	92	73.250	Neolamprologus_brichardi
ENSPREG00000007786	pspc1	87	67.653	ENSNLEG00000001294	PSPC1	93	66.402	Nomascus_leucogenys
ENSPREG00000007786	pspc1	87	59.236	ENSODEG00000007817	-	99	53.875	Octodon_degus
ENSPREG00000007786	pspc1	87	60.805	ENSODEG00000019012	-	99	58.965	Octodon_degus
ENSPREG00000007786	pspc1	100	80.306	ENSONIG00000012010	pspc1	99	80.306	Oreochromis_niloticus
ENSPREG00000007786	pspc1	75	66.910	ENSOANG00000009017	-	100	68.460	Ornithorhynchus_anatinus
ENSPREG00000007786	pspc1	91	52.642	ENSOANG00000011381	-	95	52.953	Ornithorhynchus_anatinus
ENSPREG00000007786	pspc1	87	67.728	ENSOCUG00000006153	PSPC1	92	67.000	Oryctolagus_cuniculus
ENSPREG00000007786	pspc1	100	77.027	ENSORLG00000004232	-	100	77.220	Oryzias_latipes
ENSPREG00000007786	pspc1	100	77.992	ENSORLG00020000578	PSPC1	100	78.185	Oryzias_latipes_hni
ENSPREG00000007786	pspc1	100	77.606	ENSORLG00015017480	pspc1	100	77.799	Oryzias_latipes_hsok
ENSPREG00000007786	pspc1	87	67.865	ENSOGAG00000012643	PSPC1	92	67.276	Otolemur_garnettii
ENSPREG00000007786	pspc1	86	67.941	ENSOARG00000014163	PSPC1	95	68.443	Ovis_aries
ENSPREG00000007786	pspc1	87	61.522	ENSPPAG00000009836	PSPC1	92	76.900	Pan_paniscus
ENSPREG00000007786	pspc1	99	62.617	ENSPPRG00000008833	PSPC1	99	63.873	Panthera_pardus
ENSPREG00000007786	pspc1	84	62.418	ENSPTIG00000016917	PSPC1	90	63.797	Panthera_tigris_altaica
ENSPREG00000007786	pspc1	83	68.934	ENSPTRG00000005677	PSPC1	92	71.123	Pan_troglodytes
ENSPREG00000007786	pspc1	87	67.442	ENSPANG00000001992	PSPC1	96	73.204	Papio_anubis
ENSPREG00000007786	pspc1	100	63.024	ENSPKIG00000003578	pspc1	100	64.432	Paramormyrops_kingsleyae
ENSPREG00000007786	pspc1	87	66.170	ENSPSIG00000005168	PSPC1	88	66.454	Pelodiscus_sinensis
ENSPREG00000007786	pspc1	69	72.145	ENSPMGG00000015135	pspc1	98	71.910	Periophthalmus_magnuspinnatus
ENSPREG00000007786	pspc1	92	65.517	ENSPEMG00000015214	Pspc1	92	67.004	Peromyscus_maniculatus_bairdii
ENSPREG00000007786	pspc1	58	43.137	ENSPMAG00000004618	pspc1	91	43.137	Petromyzon_marinus
ENSPREG00000007786	pspc1	92	66.132	ENSPCIG00000017680	PSPC1	95	65.759	Phascolarctos_cinereus
ENSPREG00000007786	pspc1	99	98.828	ENSPFOG00000003362	pspc1	100	98.828	Poecilia_formosa
ENSPREG00000007786	pspc1	62	59.692	ENSPLAG00000004407	-	59	53.982	Poecilia_latipinna
ENSPREG00000007786	pspc1	100	98.453	ENSPLAG00000011540	pspc1	100	98.453	Poecilia_latipinna
ENSPREG00000007786	pspc1	62	59.877	ENSPMEG00000001025	-	59	53.437	Poecilia_mexicana
ENSPREG00000007786	pspc1	100	98.453	ENSPMEG00000008322	pspc1	100	98.453	Poecilia_mexicana
ENSPREG00000007786	pspc1	87	67.230	ENSPPYG00000005186	PSPC1	96	65.957	Pongo_abelii
ENSPREG00000007786	pspc1	87	65.466	ENSPCOG00000014364	PSPC1	88	66.594	Propithecus_coquereli
ENSPREG00000007786	pspc1	87	67.516	ENSPVAG00000005036	PSPC1	93	65.606	Pteropus_vampyrus
ENSPREG00000007786	pspc1	100	72.414	ENSPNYG00000008893	pspc1	100	71.048	Pundamilia_nyererei
ENSPREG00000007786	pspc1	100	65.730	ENSPNAG00000016511	pspc1	100	66.667	Pygocentrus_nattereri
ENSPREG00000007786	pspc1	92	65.112	ENSRNOG00000020782	Pspc1	90	69.606	Rattus_norvegicus
ENSPREG00000007786	pspc1	93	65.347	ENSRBIG00000036057	PSPC1	97	72.853	Rhinopithecus_bieti
ENSPREG00000007786	pspc1	92	65.600	ENSRROG00000036334	PSPC1	97	68.672	Rhinopithecus_roxellana
ENSPREG00000007786	pspc1	78	58.275	ENSSBOG00000028172	PSPC1	90	75.445	Saimiri_boliviensis_boliviensis
ENSPREG00000007786	pspc1	92	61.477	ENSSHAG00000004696	PSPC1	95	61.240	Sarcophilus_harrisii
ENSPREG00000007786	pspc1	87	68.107	ENSSFOG00015001395	pspc1	99	70.042	Scleropages_formosus
ENSPREG00000007786	pspc1	100	76.592	ENSSMAG00000001761	pspc1	100	75.843	Scophthalmus_maximus
ENSPREG00000007786	pspc1	100	75.824	ENSSDUG00000010651	pspc1	100	76.374	Seriola_dumerili
ENSPREG00000007786	pspc1	100	70.270	ENSSLDG00000004284	pspc1	100	70.746	Seriola_lalandi_dorsalis
ENSPREG00000007786	pspc1	83	63.697	ENSSARG00000000888	PSPC1	99	59.287	Sorex_araneus
ENSPREG00000007786	pspc1	90	58.351	ENSSPUG00000008550	PSPC1	99	53.818	Sphenodon_punctatus
ENSPREG00000007786	pspc1	86	52.106	ENSSPUG00000001136	-	63	49.537	Sphenodon_punctatus
ENSPREG00000007786	pspc1	100	78.731	ENSSPAG00000001921	pspc1	100	77.799	Stegastes_partitus
ENSPREG00000007786	pspc1	87	67.653	ENSSSCG00000009569	PSPC1	98	68.957	Sus_scrofa
ENSPREG00000007786	pspc1	87	66.596	ENSTGUG00000011295	PSPC1	99	67.516	Taeniopygia_guttata
ENSPREG00000007786	pspc1	100	70.690	ENSTRUG00000011335	pspc1	100	70.115	Takifugu_rubripes
ENSPREG00000007786	pspc1	100	72.147	ENSTNIG00000010358	pspc1	100	72.147	Tetraodon_nigroviridis
ENSPREG00000007786	pspc1	87	59.615	ENSTBEG00000002361	PSPC1	97	55.985	Tupaia_belangeri
ENSPREG00000007786	pspc1	99	62.804	ENSTTRG00000003343	PSPC1	99	63.977	Tursiops_truncatus
ENSPREG00000007786	pspc1	62	73.585	ENSUAMG00000012309	PSPC1	98	69.209	Ursus_americanus
ENSPREG00000007786	pspc1	93	65.149	ENSUMAG00000013993	PSPC1	97	72.576	Ursus_maritimus
ENSPREG00000007786	pspc1	75	67.229	ENSVPAG00000010029	PSPC1	100	68.949	Vicugna_pacos
ENSPREG00000007786	pspc1	87	67.653	ENSVVUG00000006414	PSPC1	99	69.018	Vulpes_vulpes
ENSPREG00000007786	pspc1	76	95.443	ENSXCOG00000017438	pspc1	93	95.443	Xiphophorus_couchianus
ENSPREG00000007786	pspc1	76	96.203	ENSXMAG00000007929	pspc1	93	96.203	Xiphophorus_maculatus