EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPREG00000007803 (Gene tree)
Gene ID: -
Gene Symbol: hfm1
Alias: si:ch211-83f14.5
Full Name: HFM1%2C ATP dependent DNA helicase homolog
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Plus strand
Length: 19445 bases
Position: chrLG17:6482266-6501710
Accession: 103479114
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000011586	ResIII	PF04851.15	2.4e-13	1	1
ENSPREP00000011632	ResIII	PF04851.15	1.4e-12	1	1
ENSPREP00000011539	ResIII	PF04851.15	7e-11	1	1
ENSPREP00000011586	DEAD	PF00270.29	3.1e-27	1	1
ENSPREP00000011632	DEAD	PF00270.29	1e-26	1	1
ENSPREP00000011539	DEAD	PF00270.29	1.3e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000011762	-	3189	XM_008433357	ENSPREP00000011632	1062 (aa)	XP_008431579	-
ENSPRET00000011666	-	2574	-	ENSPREP00000011539	858 (aa)	-	-
ENSPRET00000011715	-	909	-	ENSPREP00000011586	302 (aa)	-	-

Gene Model

Click here to download ENSPREG00000007803's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000007803's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPREG00000007803	hfm1	92	30.085	ENSPREG00000008875	snrnp200	73	30.511
ENSPREG00000007803	hfm1	77	33.828	ENSPREG00000017616	ascc3	58	33.020

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000007803	hfm1	93	66.868	ENSG00000162669	HFM1	70	63.744	Homo_sapiens
ENSPREG00000007803	hfm1	100	82.019	ENSAPOG00000005304	hfm1	96	85.563	Acanthochromis_polyacanthus
ENSPREG00000007803	hfm1	92	67.275	ENSAMEG00000000432	HFM1	71	63.529	Ailuropoda_melanoleuca
ENSPREG00000007803	hfm1	91	81.650	ENSACIG00000021553	hfm1	94	74.571	Amphilophus_citrinellus
ENSPREG00000007803	hfm1	100	83.353	ENSAOCG00000022839	hfm1	99	83.353	Amphiprion_ocellaris
ENSPREG00000007803	hfm1	100	83.023	ENSAPEG00000014316	hfm1	99	83.023	Amphiprion_percula
ENSPREG00000007803	hfm1	96	80.063	ENSATEG00000019181	hfm1	87	79.402	Anabas_testudineus
ENSPREG00000007803	hfm1	95	64.353	ENSAPLG00000013639	HFM1	71	61.306	Anas_platyrhynchos
ENSPREG00000007803	hfm1	92	65.937	ENSANAG00000029513	HFM1	70	62.093	Aotus_nancymaae
ENSPREG00000007803	hfm1	100	78.165	ENSACLG00000009033	hfm1	99	78.165	Astatotilapia_calliptera
ENSPREG00000007803	hfm1	100	70.636	ENSAMXG00000006108	hfm1	65	71.534	Astyanax_mexicanus
ENSPREG00000007803	hfm1	92	66.667	ENSBTAG00000020856	HFM1	70	63.153	Bos_taurus
ENSPREG00000007803	hfm1	92	66.545	ENSCJAG00000001843	HFM1	70	62.956	Callithrix_jacchus
ENSPREG00000007803	hfm1	92	66.748	ENSCAFG00000020187	HFM1	71	63.137	Canis_familiaris
ENSPREG00000007803	hfm1	93	66.346	ENSTSYG00000014250	HFM1	71	62.720	Carlito_syrichta
ENSPREG00000007803	hfm1	94	65.431	ENSCPOG00000007421	HFM1	73	61.667	Cavia_porcellus
ENSPREG00000007803	hfm1	92	66.180	ENSCCAG00000033206	HFM1	70	62.660	Cebus_capucinus
ENSPREG00000007803	hfm1	92	66.423	ENSCATG00000030987	HFM1	70	62.919	Cercocebus_atys
ENSPREG00000007803	hfm1	94	65.976	ENSCLAG00000005173	HFM1	63	64.801	Chinchilla_lanigera
ENSPREG00000007803	hfm1	78	50.490	ENSCSAVG00000005094	-	100	51.532	Ciona_savignyi
ENSPREG00000007803	hfm1	94	57.550	ENSCGRG00001016995	Hfm1	74	57.645	Cricetulus_griseus_chok1gshd
ENSPREG00000007803	hfm1	95	63.830	ENSCGRG00000017181	Hfm1	74	59.480	Cricetulus_griseus_crigri
ENSPREG00000007803	hfm1	97	72.217	ENSCSEG00000017659	hfm1	95	72.684	Cynoglossus_semilaevis
ENSPREG00000007803	hfm1	80	86.056	ENSCVAG00000005075	hfm1	86	89.170	Cyprinodon_variegatus
ENSPREG00000007803	hfm1	100	72.010	ENSDARG00000104288	hfm1	82	72.010	Danio_rerio
ENSPREG00000007803	hfm1	94	64.994	ENSDNOG00000004776	HFM1	62	65.405	Dasypus_novemcinctus
ENSPREG00000007803	hfm1	94	63.349	ENSDORG00000014661	Hfm1	71	60.983	Dipodomys_ordii
ENSPREG00000007803	hfm1	73	57.080	ENSEBUG00000006133	-	91	61.416	Eptatretus_burgeri
ENSPREG00000007803	hfm1	90	66.708	ENSEASG00005015424	HFM1	96	61.294	Equus_asinus_asinus
ENSPREG00000007803	hfm1	93	66.026	ENSECAG00000024039	HFM1	63	66.022	Equus_caballus
ENSPREG00000007803	hfm1	100	75.000	ENSELUG00000018944	hfm1	97	75.698	Esox_lucius
ENSPREG00000007803	hfm1	92	67.153	ENSFCAG00000029116	HFM1	71	63.369	Felis_catus
ENSPREG00000007803	hfm1	95	64.852	ENSFALG00000001781	HFM1	72	60.697	Ficedula_albicollis
ENSPREG00000007803	hfm1	94	65.072	ENSFDAG00000020816	HFM1	71	59.679	Fukomys_damarensis
ENSPREG00000007803	hfm1	91	72.256	ENSGMOG00000017436	hfm1	97	70.771	Gadus_morhua
ENSPREG00000007803	hfm1	100	96.516	ENSGAFG00000018093	hfm1	100	96.516	Gambusia_affinis
ENSPREG00000007803	hfm1	91	75.709	ENSGACG00000015686	hfm1	98	74.605	Gasterosteus_aculeatus
ENSPREG00000007803	hfm1	64	73.604	ENSGAGG00000025197	-	86	56.314	Gopherus_agassizii
ENSPREG00000007803	hfm1	93	66.868	ENSGGOG00000038524	HFM1	70	63.583	Gorilla_gorilla
ENSPREG00000007803	hfm1	97	74.452	ENSHBUG00000007309	hfm1	97	74.452	Haplochromis_burtoni
ENSPREG00000007803	hfm1	100	74.797	ENSHCOG00000019632	hfm1	100	75.145	Hippocampus_comes
ENSPREG00000007803	hfm1	99	73.248	ENSIPUG00000017020	hfm1	97	73.248	Ictalurus_punctatus
ENSPREG00000007803	hfm1	96	63.455	ENSJJAG00000017198	Hfm1	66	64.332	Jaculus_jaculus
ENSPREG00000007803	hfm1	91	82.966	ENSKMAG00000002282	hfm1	91	79.075	Kryptolebias_marmoratus
ENSPREG00000007803	hfm1	100	78.422	ENSLBEG00000006759	hfm1	98	78.422	Labrus_bergylta
ENSPREG00000007803	hfm1	91	66.789	ENSLACG00000010698	HFM1	100	60.865	Latimeria_chalumnae
ENSPREG00000007803	hfm1	93	71.186	ENSLOCG00000004931	hfm1	94	66.278	Lepisosteus_oculatus
ENSPREG00000007803	hfm1	86	57.455	ENSLAFG00000015903	-	90	70.746	Loxodonta_africana
ENSPREG00000007803	hfm1	93	64.242	ENSMFAG00000003649	HFM1	70	60.392	Macaca_fascicularis
ENSPREG00000007803	hfm1	93	66.385	ENSMMUG00000006819	HFM1	70	63.116	Macaca_mulatta
ENSPREG00000007803	hfm1	100	78.513	ENSMAMG00000004623	hfm1	97	81.114	Mastacembelus_armatus
ENSPREG00000007803	hfm1	100	78.165	ENSMZEG00005004679	hfm1	99	78.165	Maylandia_zebra
ENSPREG00000007803	hfm1	84	64.807	ENSMGAG00000008437	HFM1	95	67.717	Meleagris_gallopavo
ENSPREG00000007803	hfm1	94	63.636	ENSMAUG00000018858	Hfm1	71	60.721	Mesocricetus_auratus
ENSPREG00000007803	hfm1	94	65.394	ENSMICG00000037935	HFM1	71	62.062	Microcebus_murinus
ENSPREG00000007803	hfm1	97	62.471	ENSMOCG00000014812	Hfm1	71	60.840	Microtus_ochrogaster
ENSPREG00000007803	hfm1	100	81.839	ENSMMOG00000006148	hfm1	98	81.839	Mola_mola
ENSPREG00000007803	hfm1	100	81.185	ENSMALG00000002401	hfm1	99	81.185	Monopterus_albus
ENSPREG00000007803	hfm1	86	72.881	MGP_CAROLIEiJ_G0027496	Hfm1	69	72.881	Mus_caroli
ENSPREG00000007803	hfm1	94	63.756	ENSMUSG00000043410	Hfm1	71	60.728	Mus_musculus
ENSPREG00000007803	hfm1	94	63.995	MGP_PahariEiJ_G0017268	Hfm1	71	60.728	Mus_pahari
ENSPREG00000007803	hfm1	94	64.115	MGP_SPRETEiJ_G0028495	Hfm1	71	61.220	Mus_spretus
ENSPREG00000007803	hfm1	94	65.472	ENSMPUG00000004594	HFM1	63	66.022	Mustela_putorius_furo
ENSPREG00000007803	hfm1	92	67.275	ENSMLUG00000010200	HFM1	71	62.963	Myotis_lucifugus
ENSPREG00000007803	hfm1	100	77.093	ENSNBRG00000002910	hfm1	97	79.733	Neolamprologus_brichardi
ENSPREG00000007803	hfm1	93	65.139	ENSNLEG00000010285	HFM1	70	60.431	Nomascus_leucogenys
ENSPREG00000007803	hfm1	86	60.406	ENSMEUG00000015788	HFM1	65	60.406	Notamacropus_eugenii
ENSPREG00000007803	hfm1	93	60.580	ENSOPRG00000013916	HFM1	58	62.228	Ochotona_princeps
ENSPREG00000007803	hfm1	93	81.620	ENSONIG00000010590	hfm1	98	76.321	Oreochromis_niloticus
ENSPREG00000007803	hfm1	91	82.803	ENSORLG00000026844	hfm1	100	82.803	Oryzias_latipes
ENSPREG00000007803	hfm1	100	70.929	ENSORLG00020002951	hfm1	74	69.346	Oryzias_latipes_hni
ENSPREG00000007803	hfm1	100	80.000	ENSOMEG00000016474	hfm1	74	71.523	Oryzias_melastigma
ENSPREG00000007803	hfm1	92	66.829	ENSOGAG00000032369	HFM1	78	65.272	Otolemur_garnettii
ENSPREG00000007803	hfm1	94	66.069	ENSOARG00000015812	HFM1	71	63.189	Ovis_aries
ENSPREG00000007803	hfm1	93	67.110	ENSPPAG00000024582	HFM1	76	63.941	Pan_paniscus
ENSPREG00000007803	hfm1	92	67.153	ENSPPRG00000003270	HFM1	71	63.503	Panthera_pardus
ENSPREG00000007803	hfm1	92	67.153	ENSPTIG00000018881	HFM1	71	63.503	Panthera_tigris_altaica
ENSPREG00000007803	hfm1	93	67.110	ENSPTRG00000000948	HFM1	70	63.815	Pan_troglodytes
ENSPREG00000007803	hfm1	92	66.423	ENSPANG00000009838	HFM1	70	62.821	Papio_anubis
ENSPREG00000007803	hfm1	99	71.362	ENSPKIG00000003810	hfm1	99	71.362	Paramormyrops_kingsleyae
ENSPREG00000007803	hfm1	91	77.707	ENSPMGG00000011059	hfm1	98	77.707	Periophthalmus_magnuspinnatus
ENSPREG00000007803	hfm1	94	63.636	ENSPEMG00000022852	Hfm1	70	60.865	Peromyscus_maniculatus_bairdii
ENSPREG00000007803	hfm1	92	66.990	ENSPCIG00000014233	HFM1	63	65.880	Phascolarctos_cinereus
ENSPREG00000007803	hfm1	91	94.335	ENSPFOG00000017194	hfm1	100	90.353	Poecilia_formosa
ENSPREG00000007803	hfm1	100	96.179	ENSPLAG00000000571	hfm1	98	96.179	Poecilia_latipinna
ENSPREG00000007803	hfm1	100	95.802	ENSPMEG00000019475	hfm1	99	95.802	Poecilia_mexicana
ENSPREG00000007803	hfm1	93	66.949	ENSPPYG00000001163	HFM1	70	63.941	Pongo_abelii
ENSPREG00000007803	hfm1	94	60.454	ENSPVAG00000009713	HFM1	66	59.936	Pteropus_vampyrus
ENSPREG00000007803	hfm1	100	77.842	ENSPNYG00000001795	hfm1	99	77.842	Pundamilia_nyererei
ENSPREG00000007803	hfm1	100	75.810	ENSPNAG00000010865	hfm1	90	75.810	Pygocentrus_nattereri
ENSPREG00000007803	hfm1	97	62.804	ENSRNOG00000023299	Hfm1	71	60.959	Rattus_norvegicus
ENSPREG00000007803	hfm1	92	66.667	ENSRROG00000045569	HFM1	70	63.116	Rhinopithecus_roxellana
ENSPREG00000007803	hfm1	92	66.423	ENSSBOG00000027456	HFM1	66	65.951	Saimiri_boliviensis_boliviensis
ENSPREG00000007803	hfm1	66	69.608	ENSSHAG00000014616	-	69	69.458	Sarcophilus_harrisii
ENSPREG00000007803	hfm1	100	73.109	ENSSFOG00015020129	hfm1	64	70.968	Scleropages_formosus
ENSPREG00000007803	hfm1	92	80.097	ENSSMAG00000006907	hfm1	87	79.333	Scophthalmus_maximus
ENSPREG00000007803	hfm1	100	82.326	ENSSDUG00000011424	hfm1	99	82.326	Seriola_dumerili
ENSPREG00000007803	hfm1	100	82.599	ENSSLDG00000016386	hfm1	99	82.599	Seriola_lalandi_dorsalis
ENSPREG00000007803	hfm1	77	63.713	ENSSPUG00000003380	-	62	63.713	Sphenodon_punctatus
ENSPREG00000007803	hfm1	100	83.721	ENSSPAG00000001023	hfm1	99	83.721	Stegastes_partitus
ENSPREG00000007803	hfm1	94	66.308	ENSSSCG00000006912	HFM1	68	66.308	Sus_scrofa
ENSPREG00000007803	hfm1	91	65.725	ENSTGUG00000006172	HFM1	97	64.278	Taeniopygia_guttata
ENSPREG00000007803	hfm1	64	78.974	ENSTNIG00000006962	hfm1	97	79.830	Tetraodon_nigroviridis
ENSPREG00000007803	hfm1	94	65.233	ENSTTRG00000013933	HFM1	72	62.353	Tursiops_truncatus
ENSPREG00000007803	hfm1	92	64.720	ENSVPAG00000011331	HFM1	71	61.155	Vicugna_pacos
ENSPREG00000007803	hfm1	90	66.667	ENSVVUG00000020760	HFM1	99	60.254	Vulpes_vulpes
ENSPREG00000007803	hfm1	100	95.972	ENSXMAG00000004178	hfm1	100	95.972	Xiphophorus_maculatus