EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPREG00000007902 (Gene tree)
Gene ID: 103476270
Gene Symbol: r3hdm1
Alias: WITHDRAWN: wu:fj35h04|fj35h04|fk85b04|id:ibd5043|sb:eu460|si:ch73-60i13.2|wu:fj35h04|wu:fk85b04
Full Name: R3H domain-containing protein 1-like
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Minus strand
Length: 43085 bases
Position: chrLG2:1510655-1553739
Accession: 103476270
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000011930	R3H	PF01424.22	2.1e-12	1	1
ENSPREP00000011879	R3H	PF01424.22	2.2e-12	1	1
ENSPREP00000011830	R3H	PF01424.22	2.2e-12	1	1
ENSPREP00000011751	R3H	PF01424.22	2.3e-12	1	1
ENSPREP00000011786	R3H	PF01424.22	2.4e-12	1	1
ENSPREP00000011707	R3H	PF01424.22	2.4e-12	1	1
ENSPREP00000011674	R3H	PF01424.22	2.4e-12	1	1
ENSPREP00000011985	R3H	PF01424.22	1.8e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000012063	-	3124	-	ENSPREP00000011930	950 (aa)	-	-
ENSPRET00000011836	-	5006	XM_017310588	ENSPREP00000011707	1028 (aa)	XP_017166077	-
ENSPRET00000011916	-	4815	-	ENSPREP00000011786	1022 (aa)	-	-
ENSPRET00000012114	-	1422	-	ENSPREP00000011985	473 (aa)	-	-
ENSPRET00000011800	-	5927	XM_008428484	ENSPREP00000011674	1029 (aa)	XP_008426706	UPI0004A3923D
ENSPRET00000011960	-	4725	XM_017310592	ENSPREP00000011830	992 (aa)	XP_017166081	UPI0004A27ED6
ENSPRET00000012010	-	4707	XM_017310598	ENSPREP00000011879	986 (aa)	XP_017166087	-
ENSPRET00000011881	-	4916	-	ENSPREP00000011751	998 (aa)	-	-

Gene Model

Click here to download ENSPREG00000007902's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000007902's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPREG00000007902	r3hdm1	78	63.899	ENSPREG00000008424	r3hdm2	74	58.876

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000007902	r3hdm1	94	60.000	ENSG00000048991	R3HDM1	85	71.138	Homo_sapiens
ENSPREG00000007902	r3hdm1	100	82.347	ENSAPOG00000020850	r3hdm1	96	82.061	Acanthochromis_polyacanthus
ENSPREG00000007902	r3hdm1	88	62.233	ENSAMEG00000014886	R3HDM1	89	48.223	Ailuropoda_melanoleuca
ENSPREG00000007902	r3hdm1	96	68.817	ENSACIG00000018791	-	96	67.702	Amphilophus_citrinellus
ENSPREG00000007902	r3hdm1	100	82.426	ENSAOCG00000005192	r3hdm1	100	82.426	Amphiprion_ocellaris
ENSPREG00000007902	r3hdm1	100	81.558	ENSAPEG00000016108	r3hdm1	100	81.460	Amphiprion_percula
ENSPREG00000007902	r3hdm1	100	76.535	ENSATEG00000000232	r3hdm1	100	76.238	Anabas_testudineus
ENSPREG00000007902	r3hdm1	88	62.648	ENSAPLG00000015231	R3HDM1	89	47.081	Anas_platyrhynchos
ENSPREG00000007902	r3hdm1	88	61.758	ENSACAG00000001676	R3HDM1	89	48.661	Anolis_carolinensis
ENSPREG00000007902	r3hdm1	91	60.267	ENSANAG00000035334	R3HDM1	81	68.932	Aotus_nancymaae
ENSPREG00000007902	r3hdm1	100	79.089	ENSACLG00000027282	r3hdm1	100	78.535	Astatotilapia_calliptera
ENSPREG00000007902	r3hdm1	85	73.267	ENSAMXG00000012861	R3HDM1	89	61.928	Astyanax_mexicanus
ENSPREG00000007902	r3hdm1	86	71.885	ENSAMXG00000003536	r3hdm1	77	73.597	Astyanax_mexicanus
ENSPREG00000007902	r3hdm1	55	53.604	ENSAMXG00000020587	arpp21	76	53.812	Astyanax_mexicanus
ENSPREG00000007902	r3hdm1	88	62.291	ENSBTAG00000013302	R3HDM1	89	48.790	Bos_taurus
ENSPREG00000007902	r3hdm1	94	60.847	ENSCJAG00000011718	R3HDM1	81	68.932	Callithrix_jacchus
ENSPREG00000007902	r3hdm1	86	62.740	ENSCAFG00000005075	R3HDM1	89	48.418	Canis_familiaris
ENSPREG00000007902	r3hdm1	94	60.870	ENSCAFG00020016119	R3HDM1	99	55.098	Canis_lupus_dingo
ENSPREG00000007902	r3hdm1	88	62.053	ENSCHIG00000020851	R3HDM1	89	48.828	Capra_hircus
ENSPREG00000007902	r3hdm1	93	58.482	ENSCPOG00000012784	R3HDM1	100	60.751	Cavia_porcellus
ENSPREG00000007902	r3hdm1	94	60.313	ENSCCAG00000027199	R3HDM1	81	68.608	Cebus_capucinus
ENSPREG00000007902	r3hdm1	95	61.290	ENSCATG00000023642	R3HDM1	81	68.285	Cercocebus_atys
ENSPREG00000007902	r3hdm1	93	60.222	ENSCLAG00000007962	R3HDM1	100	63.390	Chinchilla_lanigera
ENSPREG00000007902	r3hdm1	88	62.470	ENSCSAG00000016356	R3HDM1	89	48.193	Chlorocebus_sabaeus
ENSPREG00000007902	r3hdm1	80	65.625	ENSCHOG00000013638	R3HDM1	68	65.625	Choloepus_hoffmanni
ENSPREG00000007902	r3hdm1	82	71.942	ENSCPBG00000009645	R3HDM1	86	71.942	Chrysemys_picta_bellii
ENSPREG00000007902	r3hdm1	94	60.582	ENSCANG00000034748	R3HDM1	81	68.608	Colobus_angolensis_palliatus
ENSPREG00000007902	r3hdm1	88	61.520	ENSCGRG00001012357	R3hdm1	86	47.967	Cricetulus_griseus_chok1gshd
ENSPREG00000007902	r3hdm1	88	61.814	ENSCGRG00000012080	R3hdm1	100	64.164	Cricetulus_griseus_crigri
ENSPREG00000007902	r3hdm1	100	67.317	ENSCSEG00000008944	r3hdm1	100	68.367	Cynoglossus_semilaevis
ENSPREG00000007902	r3hdm1	100	86.103	ENSCVAG00000007582	r3hdm1	100	85.801	Cyprinodon_variegatus
ENSPREG00000007902	r3hdm1	63	57.143	ENSDARG00000061081	arpp21	87	41.840	Danio_rerio
ENSPREG00000007902	r3hdm1	99	45.886	ENSDNOG00000000771	R3HDM1	89	46.339	Dasypus_novemcinctus
ENSPREG00000007902	r3hdm1	85	61.809	ENSETEG00000013606	R3HDM1	89	44.541	Echinops_telfairi
ENSPREG00000007902	r3hdm1	87	48.753	ENSEBUG00000014746	arpp21	99	40.145	Eptatretus_burgeri
ENSPREG00000007902	r3hdm1	88	68.285	ENSEASG00005007392	R3HDM1	88	59.716	Equus_asinus_asinus
ENSPREG00000007902	r3hdm1	88	68.285	ENSECAG00000019114	R3HDM1	88	59.716	Equus_caballus
ENSPREG00000007902	r3hdm1	88	55.819	ENSEEUG00000012589	R3HDM1	56	49.911	Erinaceus_europaeus
ENSPREG00000007902	r3hdm1	86	63.658	ENSELUG00000004909	R3HDM1	85	53.418	Esox_lucius
ENSPREG00000007902	r3hdm1	79	69.403	ENSELUG00000014413	r3hdm1	83	53.177	Esox_lucius
ENSPREG00000007902	r3hdm1	86	66.770	ENSFCAG00000027113	R3HDM1	88	59.716	Felis_catus
ENSPREG00000007902	r3hdm1	92	61.086	ENSFALG00000013731	R3HDM1	90	44.484	Ficedula_albicollis
ENSPREG00000007902	r3hdm1	94	60.349	ENSFDAG00000016478	R3HDM1	100	63.481	Fukomys_damarensis
ENSPREG00000007902	r3hdm1	100	86.898	ENSFHEG00000018713	r3hdm1	100	87.187	Fundulus_heteroclitus
ENSPREG00000007902	r3hdm1	81	65.891	ENSGMOG00000006042	-	79	57.345	Gadus_morhua
ENSPREG00000007902	r3hdm1	80	68.730	ENSGALG00000012246	R3HDM1	84	65.132	Gallus_gallus
ENSPREG00000007902	r3hdm1	100	93.691	ENSGAFG00000006203	r3hdm1	100	93.691	Gambusia_affinis
ENSPREG00000007902	r3hdm1	94	79.869	ENSGACG00000014925	r3hdm1	95	76.566	Gasterosteus_aculeatus
ENSPREG00000007902	r3hdm1	93	59.292	ENSGAGG00000007840	R3HDM1	79	64.326	Gopherus_agassizii
ENSPREG00000007902	r3hdm1	94	60.000	ENSGGOG00000008156	R3HDM1	81	68.608	Gorilla_gorilla
ENSPREG00000007902	r3hdm1	96	79.482	ENSHBUG00000015737	R3HDM1	99	79.428	Haplochromis_burtoni
ENSPREG00000007902	r3hdm1	94	60.699	ENSHGLG00000015718	R3HDM1	100	64.846	Heterocephalus_glaber_female
ENSPREG00000007902	r3hdm1	88	63.420	ENSHGLG00100003184	-	100	65.188	Heterocephalus_glaber_male
ENSPREG00000007902	r3hdm1	95	41.089	ENSHGLG00100015374	-	89	40.987	Heterocephalus_glaber_male
ENSPREG00000007902	r3hdm1	100	65.564	ENSHCOG00000013366	r3hdm1	100	65.253	Hippocampus_comes
ENSPREG00000007902	r3hdm1	53	74.286	ENSHCOG00000005036	-	53	74.286	Hippocampus_comes
ENSPREG00000007902	r3hdm1	95	59.913	ENSIPUG00000013629	r3hdm1	81	68.647	Ictalurus_punctatus
ENSPREG00000007902	r3hdm1	86	70.032	ENSIPUG00000001676	R3HDM1	100	61.425	Ictalurus_punctatus
ENSPREG00000007902	r3hdm1	93	60.310	ENSSTOG00000007572	R3HDM1	100	63.823	Ictidomys_tridecemlineatus
ENSPREG00000007902	r3hdm1	64	83.471	ENSKMAG00000013373	-	95	85.124	Kryptolebias_marmoratus
ENSPREG00000007902	r3hdm1	87	79.227	ENSLBEG00000027981	-	99	81.264	Labrus_bergylta
ENSPREG00000007902	r3hdm1	86	64.423	ENSLACG00000005334	R3HDM1	88	50.980	Latimeria_chalumnae
ENSPREG00000007902	r3hdm1	93	62.281	ENSLOCG00000001641	r3hdm1	90	51.068	Lepisosteus_oculatus
ENSPREG00000007902	r3hdm1	86	65.839	ENSLAFG00000009065	R3HDM1	85	65.909	Loxodonta_africana
ENSPREG00000007902	r3hdm1	88	68.608	ENSMFAG00000030331	R3HDM1	81	68.608	Macaca_fascicularis
ENSPREG00000007902	r3hdm1	94	60.000	ENSMMUG00000009844	R3HDM1	81	68.608	Macaca_mulatta
ENSPREG00000007902	r3hdm1	88	68.608	ENSMNEG00000027793	R3HDM1	81	68.608	Macaca_nemestrina
ENSPREG00000007902	r3hdm1	94	60.000	ENSMLEG00000043189	R3HDM1	81	68.608	Mandrillus_leucophaeus
ENSPREG00000007902	r3hdm1	100	78.872	ENSMAMG00000004532	r3hdm1	100	78.585	Mastacembelus_armatus
ENSPREG00000007902	r3hdm1	100	79.641	ENSMZEG00005003157	r3hdm1	100	79.218	Maylandia_zebra
ENSPREG00000007902	r3hdm1	88	61.702	ENSMGAG00000012461	R3HDM1	88	47.076	Meleagris_gallopavo
ENSPREG00000007902	r3hdm1	88	61.520	ENSMAUG00000010315	R3hdm1	100	64.164	Mesocricetus_auratus
ENSPREG00000007902	r3hdm1	94	60.800	ENSMICG00000042655	-	85	68.285	Microcebus_murinus
ENSPREG00000007902	r3hdm1	94	61.067	ENSMICG00000005900	-	80	68.608	Microcebus_murinus
ENSPREG00000007902	r3hdm1	88	61.520	ENSMOCG00000019833	-	100	63.823	Microtus_ochrogaster
ENSPREG00000007902	r3hdm1	88	59.545	ENSMODG00000000923	R3HDM1	96	47.016	Monodelphis_domestica
ENSPREG00000007902	r3hdm1	100	77.435	ENSMALG00000009000	r3hdm1	90	77.049	Monopterus_albus
ENSPREG00000007902	r3hdm1	88	62.233	MGP_CAROLIEiJ_G0014543	R3hdm1	100	64.189	Mus_caroli
ENSPREG00000007902	r3hdm1	88	62.233	ENSMUSG00000056211	R3hdm1	100	64.189	Mus_musculus
ENSPREG00000007902	r3hdm1	88	61.758	MGP_PahariEiJ_G0027779	R3hdm1	100	64.189	Mus_pahari
ENSPREG00000007902	r3hdm1	88	62.233	MGP_SPRETEiJ_G0015350	R3hdm1	100	64.189	Mus_spretus
ENSPREG00000007902	r3hdm1	88	62.233	ENSMPUG00000002412	R3HDM1	89	48.604	Mustela_putorius_furo
ENSPREG00000007902	r3hdm1	88	61.995	ENSMLUG00000013824	R3HDM1	89	48.230	Myotis_lucifugus
ENSPREG00000007902	r3hdm1	94	60.000	ENSNLEG00000008622	R3HDM1	81	68.608	Nomascus_leucogenys
ENSPREG00000007902	r3hdm1	94	43.759	ENSMEUG00000011784	R3HDM1	93	44.336	Notamacropus_eugenii
ENSPREG00000007902	r3hdm1	93	60.532	ENSODEG00000008607	R3HDM1	100	63.481	Octodon_degus
ENSPREG00000007902	r3hdm1	95	77.459	ENSONIG00000012017	r3hdm1	89	77.254	Oreochromis_niloticus
ENSPREG00000007902	r3hdm1	89	61.060	ENSOANG00000007987	R3HDM1	89	48.701	Ornithorhynchus_anatinus
ENSPREG00000007902	r3hdm1	88	62.053	ENSOCUG00000017366	R3HDM1	97	48.844	Oryctolagus_cuniculus
ENSPREG00000007902	r3hdm1	100	71.224	ENSORLG00000004297	r3hdm1	100	71.689	Oryzias_latipes
ENSPREG00000007902	r3hdm1	69	82.388	ENSORLG00020019252	-	93	82.161	Oryzias_latipes_hni
ENSPREG00000007902	r3hdm1	100	72.300	ENSORLG00015017355	r3hdm1	100	72.500	Oryzias_latipes_hsok
ENSPREG00000007902	r3hdm1	94	78.901	ENSOMEG00000003882	-	100	77.449	Oryzias_melastigma
ENSPREG00000007902	r3hdm1	88	62.470	ENSOGAG00000003136	R3HDM1	89	48.312	Otolemur_garnettii
ENSPREG00000007902	r3hdm1	88	62.053	ENSOARG00000010788	R3HDM1	89	48.735	Ovis_aries
ENSPREG00000007902	r3hdm1	94	60.000	ENSPPAG00000027858	R3HDM1	81	68.608	Pan_paniscus
ENSPREG00000007902	r3hdm1	94	60.533	ENSPPRG00000002626	R3HDM1	80	67.961	Panthera_pardus
ENSPREG00000007902	r3hdm1	94	60.800	ENSPTIG00000016581	R3HDM1	80	68.285	Panthera_tigris_altaica
ENSPREG00000007902	r3hdm1	94	60.000	ENSPTRG00000012494	R3HDM1	81	68.608	Pan_troglodytes
ENSPREG00000007902	r3hdm1	94	60.000	ENSPANG00000026448	R3HDM1	81	68.608	Papio_anubis
ENSPREG00000007902	r3hdm1	92	58.957	ENSPKIG00000011224	R3HDM1	90	59.606	Paramormyrops_kingsleyae
ENSPREG00000007902	r3hdm1	88	74.754	ENSPKIG00000004328	r3hdm1	78	73.770	Paramormyrops_kingsleyae
ENSPREG00000007902	r3hdm1	89	60.920	ENSPSIG00000012915	R3HDM1	88	48.269	Pelodiscus_sinensis
ENSPREG00000007902	r3hdm1	93	68.805	ENSPMGG00000011264	-	94	68.805	Periophthalmus_magnuspinnatus
ENSPREG00000007902	r3hdm1	88	61.758	ENSPEMG00000015187	R3hdm1	100	64.189	Peromyscus_maniculatus_bairdii
ENSPREG00000007902	r3hdm1	86	56.351	ENSPMAG00000003369	-	95	41.153	Petromyzon_marinus
ENSPREG00000007902	r3hdm1	90	66.873	ENSPCIG00000002491	R3HDM1	88	59.857	Phascolarctos_cinereus
ENSPREG00000007902	r3hdm1	100	95.164	ENSPFOG00000015036	r3hdm1	100	95.164	Poecilia_formosa
ENSPREG00000007902	r3hdm1	100	94.869	ENSPLAG00000018042	r3hdm1	100	94.869	Poecilia_latipinna
ENSPREG00000007902	r3hdm1	100	94.665	ENSPMEG00000023947	r3hdm1	100	94.665	Poecilia_mexicana
ENSPREG00000007902	r3hdm1	88	59.145	ENSPPYG00000012815	R3HDM1	89	47.747	Pongo_abelii
ENSPREG00000007902	r3hdm1	81	70.354	ENSPCAG00000006208	R3HDM1	67	70.044	Procavia_capensis
ENSPREG00000007902	r3hdm1	85	70.758	ENSPCOG00000012698	R3HDM1	79	70.758	Propithecus_coquereli
ENSPREG00000007902	r3hdm1	86	56.731	ENSPVAG00000006098	R3HDM1	89	42.212	Pteropus_vampyrus
ENSPREG00000007902	r3hdm1	67	84.735	ENSPNYG00000008701	-	98	86.432	Pundamilia_nyererei
ENSPREG00000007902	r3hdm1	62	52.326	ENSPNAG00000004162	arpp21	85	47.205	Pygocentrus_nattereri
ENSPREG00000007902	r3hdm1	85	71.617	ENSPNAG00000005436	R3HDM1	87	70.627	Pygocentrus_nattereri
ENSPREG00000007902	r3hdm1	82	73.267	ENSPNAG00000013952	r3hdm1	89	61.827	Pygocentrus_nattereri
ENSPREG00000007902	r3hdm1	86	61.779	ENSRNOG00000004099	R3hdm1	89	47.597	Rattus_norvegicus
ENSPREG00000007902	r3hdm1	81	70.863	ENSRBIG00000033317	R3HDM1	86	70.863	Rhinopithecus_bieti
ENSPREG00000007902	r3hdm1	94	60.582	ENSRROG00000034534	R3HDM1	81	68.608	Rhinopithecus_roxellana
ENSPREG00000007902	r3hdm1	94	60.582	ENSSBOG00000020389	R3HDM1	81	68.932	Saimiri_boliviensis_boliviensis
ENSPREG00000007902	r3hdm1	88	62.233	ENSSHAG00000016999	R3HDM1	89	48.155	Sarcophilus_harrisii
ENSPREG00000007902	r3hdm1	85	75.083	ENSSFOG00015014134	r3hdm1	78	74.086	Scleropages_formosus
ENSPREG00000007902	r3hdm1	88	64.133	ENSSFOG00015019851	-	94	54.023	Scleropages_formosus
ENSPREG00000007902	r3hdm1	100	74.608	ENSSMAG00000001669	r3hdm1	90	74.608	Scophthalmus_maximus
ENSPREG00000007902	r3hdm1	100	78.550	ENSSDUG00000010749	r3hdm1	100	78.980	Seriola_dumerili
ENSPREG00000007902	r3hdm1	100	80.020	ENSSLDG00000004499	r3hdm1	90	80.338	Seriola_lalandi_dorsalis
ENSPREG00000007902	r3hdm1	57	51.466	ENSSARG00000000352	-	52	52.769	Sorex_araneus
ENSPREG00000007902	r3hdm1	89	60.047	ENSSPUG00000004167	R3HDM1	88	47.813	Sphenodon_punctatus
ENSPREG00000007902	r3hdm1	100	80.788	ENSSPAG00000004648	r3hdm1	100	80.887	Stegastes_partitus
ENSPREG00000007902	r3hdm1	94	57.333	ENSSSCG00000015692	R3HDM1	81	64.706	Sus_scrofa
ENSPREG00000007902	r3hdm1	93	60.310	ENSTGUG00000011750	R3HDM1	89	47.042	Taeniopygia_guttata
ENSPREG00000007902	r3hdm1	100	71.248	ENSTRUG00000011654	r3hdm1	99	71.150	Takifugu_rubripes
ENSPREG00000007902	r3hdm1	94	74.945	ENSTNIG00000010362	r3hdm1	99	68.485	Tetraodon_nigroviridis
ENSPREG00000007902	r3hdm1	88	61.520	ENSTTRG00000003935	R3HDM1	79	46.242	Tursiops_truncatus
ENSPREG00000007902	r3hdm1	94	60.044	ENSUAMG00000024806	R3HDM1	99	55.714	Ursus_americanus
ENSPREG00000007902	r3hdm1	94	60.317	ENSUMAG00000005552	R3HDM1	80	68.285	Ursus_maritimus
ENSPREG00000007902	r3hdm1	81	61.125	ENSVPAG00000007333	R3HDM1	74	49.709	Vicugna_pacos
ENSPREG00000007902	r3hdm1	94	59.788	ENSVVUG00000006457	R3HDM1	81	68.285	Vulpes_vulpes
ENSPREG00000007902	r3hdm1	89	61.416	ENSXETG00000019330	r3hdm1	99	44.712	Xenopus_tropicalis
ENSPREG00000007902	r3hdm1	94	92.000	ENSXCOG00000017448	r3hdm1	93	88.814	Xiphophorus_couchianus
ENSPREG00000007902	r3hdm1	100	93.489	ENSXMAG00000007885	r3hdm1	100	93.878	Xiphophorus_maculatus