EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPREG00000008243 (Gene tree)
Gene ID: 103472995
Gene Symbol: -
Alias: -
Full Name: elongation factor 1-alpha-like
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Minus strand
Length: 15535 bases
Position: chrLG11:27313531-27329065
Accession: 103472995
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000012267	GTP_EFTU	PF00009.27	4.7e-53	1	1
ENSPREP00000012224	GTP_EFTU	PF00009.27	4.8e-53	1	1
ENSPREP00000012164	GTP_EFTU	PF00009.27	5.3e-53	1	1
ENSPREP00000012185	GTP_EFTU	PF00009.27	5.7e-53	1	1
ENSPREP00000012205	GTP_EFTU	PF00009.27	8.9e-53	1	1
ENSPREP00000012255	GTP_EFTU	PF00009.27	3.4e-37	1	2
ENSPREP00000012255	GTP_EFTU	PF00009.27	3.4e-37	2	2
ENSPREP00000012267	GTP_EFTU_D2	PF03144.25	3.4e-15	1	1
ENSPREP00000012185	GTP_EFTU_D2	PF03144.25	3.8e-15	1	1
ENSPREP00000012164	GTP_EFTU_D2	PF03144.25	3.9e-15	1	1
ENSPREP00000012205	GTP_EFTU_D2	PF03144.25	5.5e-14	1	1
ENSPREP00000012255	GTP_EFTU_D2	PF03144.25	5.5e-14	1	1
ENSPREP00000012164	GTP_EFTU_D3	PF03143.17	2.7e-42	1	1
ENSPREP00000012267	GTP_EFTU_D3	PF03143.17	2.9e-42	1	1
ENSPREP00000012185	GTP_EFTU_D3	PF03143.17	6.2e-41	1	1
ENSPREP00000012224	GTP_EFTU_D3	PF03143.17	7.1e-41	1	1
ENSPREP00000012255	GTP_EFTU_D3	PF03143.17	9.7e-41	1	1
ENSPREP00000012205	GTP_EFTU_D3	PF03143.17	1e-40	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000012388	-	1338	XM_008422892	ENSPREP00000012255	445 (aa)	XP_008421114	-
ENSPRET00000012399	-	3472	XM_008422891	ENSPREP00000012267	461 (aa)	XP_008421113	UPI0004A382C5
ENSPRET00000012297	-	5469	-	ENSPREP00000012164	462 (aa)	-	-
ENSPRET00000012357	-	2756	-	ENSPREP00000012224	432 (aa)	-	-
ENSPRET00000012318	-	5469	-	ENSPREP00000012185	462 (aa)	-	-
ENSPRET00000012338	-	5469	-	ENSPREP00000012205	462 (aa)	-	-

Gene Model

Click here to download ENSPREG00000008243's gene model file

Pathways

Pathway ID	Pathway Name	Source
pret03013	RNA transport	KEGG
pret03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000008243's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPREG00000008243	-	98	68.212	ENSPREG00000006280	si:dkey-37o8.1	95	73.626
ENSPREG00000008243	-	100	90.043	ENSPREG00000001416	eef1a1b	100	90.043
ENSPREG00000008243	-	94	42.166	ENSPREG00000011270	hbs1l	60	42.166
ENSPREG00000008243	-	100	90.043	ENSPREG00000004165	EEF1A1	100	90.043
ENSPREG00000008243	-	96	38.288	ENSPREG00000016668	-	88	38.462
ENSPREG00000008243	-	96	38.600	ENSPREG00000008023	gspt1l	68	38.600

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000008243	-	98	93.126	ENSAPOG00000004714	-	100	91.775	Acanthochromis_polyacanthus
ENSPREG00000008243	-	90	93.947	ENSACIG00000001219	-	99	92.271	Amphilophus_citrinellus
ENSPREG00000008243	-	87	94.789	ENSAOCG00000022002	-	100	92.995	Amphiprion_ocellaris
ENSPREG00000008243	-	100	91.342	ENSAOCG00000022039	-	100	91.342	Amphiprion_ocellaris
ENSPREG00000008243	-	100	91.342	ENSAPEG00000016361	-	100	91.342	Amphiprion_percula
ENSPREG00000008243	-	98	95.565	ENSATEG00000003244	-	95	95.565	Anabas_testudineus
ENSPREG00000008243	-	100	93.709	ENSACLG00000022560	-	98	93.792	Astatotilapia_calliptera
ENSPREG00000008243	-	100	83.550	WBGene00001169	eef-1A.2	99	83.550	Caenorhabditis_elegans
ENSPREG00000008243	-	100	83.550	WBGene00001168	eef-1A.1	99	83.550	Caenorhabditis_elegans
ENSPREG00000008243	-	99	84.532	ENSCING00000021478	-	99	84.532	Ciona_intestinalis
ENSPREG00000008243	-	98	81.798	ENSCING00000005126	-	100	81.760	Ciona_intestinalis
ENSPREG00000008243	-	98	81.498	ENSCING00000018894	-	99	81.466	Ciona_intestinalis
ENSPREG00000008243	-	100	80.258	ENSCING00000007703	-	99	80.258	Ciona_intestinalis
ENSPREG00000008243	-	98	81.264	ENSCSAVG00000003196	-	100	81.237	Ciona_savignyi
ENSPREG00000008243	-	98	84.176	ENSCSAVG00000009663	-	100	84.086	Ciona_savignyi
ENSPREG00000008243	-	99	85.153	ENSCSAVG00000006357	-	98	94.000	Ciona_savignyi
ENSPREG00000008243	-	99	77.342	ENSCSAVG00000001085	-	91	77.342	Ciona_savignyi
ENSPREG00000008243	-	90	87.681	ENSCSEG00000007972	-	100	87.681	Cynoglossus_semilaevis
ENSPREG00000008243	-	98	94.900	ENSCSEG00000008011	-	100	93.074	Cynoglossus_semilaevis
ENSPREG00000008243	-	89	87.167	ENSCSEG00000007992	-	99	87.167	Cynoglossus_semilaevis
ENSPREG00000008243	-	100	98.265	ENSCVAG00000019356	-	100	98.265	Cyprinodon_variegatus
ENSPREG00000008243	-	100	87.013	FBgn0284245	eEF1alpha1	99	87.013	Drosophila_melanogaster
ENSPREG00000008243	-	98	87.168	FBgn0000557	eEF1alpha2	100	86.797	Drosophila_melanogaster
ENSPREG00000008243	-	99	84.816	ENSEBUG00000015814	-	100	84.816	Eptatretus_burgeri
ENSPREG00000008243	-	100	98.052	ENSFHEG00000015054	-	100	98.052	Fundulus_heteroclitus
ENSPREG00000008243	-	100	99.132	ENSGAFG00000014646	-	100	99.132	Gambusia_affinis
ENSPREG00000008243	-	100	93.492	ENSGACG00000002143	-	100	92.208	Gasterosteus_aculeatus
ENSPREG00000008243	-	98	95.122	ENSGACG00000002182	-	100	93.939	Gasterosteus_aculeatus
ENSPREG00000008243	-	56	90.625	ENSHBUG00000017166	-	96	87.938	Haplochromis_burtoni
ENSPREG00000008243	-	98	95.122	ENSHCOG00000008468	-	100	93.939	Hippocampus_comes
ENSPREG00000008243	-	99	86.551	ENSHCOG00000008489	-	100	86.551	Hippocampus_comes
ENSPREG00000008243	-	99	85.466	ENSLBEG00000002955	-	100	85.466	Labrus_bergylta
ENSPREG00000008243	-	98	94.457	ENSLBEG00000002759	-	100	92.641	Labrus_bergylta
ENSPREG00000008243	-	100	96.963	ENSMAMG00000007715	-	100	96.963	Mastacembelus_armatus
ENSPREG00000008243	-	99	86.768	ENSMMOG00000001106	-	99	86.768	Mola_mola
ENSPREG00000008243	-	98	92.905	ENSMMOG00000001165	-	100	94.444	Mola_mola
ENSPREG00000008243	-	100	77.056	ENSMMOG00000018160	-	100	89.130	Mola_mola
ENSPREG00000008243	-	100	82.468	ENSNBRG00000017346	-	99	81.573	Neolamprologus_brichardi
ENSPREG00000008243	-	76	90.909	ENSONIG00000017760	-	98	90.909	Oreochromis_niloticus
ENSPREG00000008243	-	100	96.746	ENSORLG00000007614	eef1a	100	96.746	Oryzias_latipes
ENSPREG00000008243	-	100	97.619	ENSORLG00015002397	-	100	97.619	Oryzias_latipes_hsok
ENSPREG00000008243	-	100	97.614	ENSOMEG00000018226	-	100	97.614	Oryzias_melastigma
ENSPREG00000008243	-	94	50.346	ENSPMGG00000022427	-	97	60.000	Periophthalmus_magnuspinnatus
ENSPREG00000008243	-	98	94.469	ENSPMGG00000023911	-	100	97.674	Periophthalmus_magnuspinnatus
ENSPREG00000008243	-	100	99.349	ENSPFOG00000003924	-	100	99.516	Poecilia_formosa
ENSPREG00000008243	-	100	99.349	ENSPLAG00000004316	-	100	99.349	Poecilia_latipinna
ENSPREG00000008243	-	100	99.566	ENSPMEG00000001010	-	100	99.566	Poecilia_mexicana
ENSPREG00000008243	-	100	93.709	ENSPNYG00000007263	-	98	93.792	Pundamilia_nyererei
ENSPREG00000008243	-	97	81.124	YBR118W	TEF2	100	80.260	Saccharomyces_cerevisiae
ENSPREG00000008243	-	97	81.124	YPR080W	TEF1	100	80.260	Saccharomyces_cerevisiae
ENSPREG00000008243	-	98	83.087	ENSSMAG00000018469	-	100	82.231	Scophthalmus_maximus
ENSPREG00000008243	-	53	92.213	ENSSMAG00000016277	-	100	90.196	Scophthalmus_maximus
ENSPREG00000008243	-	98	95.565	ENSSDUG00000008198	-	100	93.939	Seriola_dumerili
ENSPREG00000008243	-	98	93.570	ENSSPAG00000001710	-	100	91.775	Stegastes_partitus
ENSPREG00000008243	-	99	86.985	ENSTRUG00000005066	-	99	86.985	Takifugu_rubripes
ENSPREG00000008243	-	98	95.565	ENSTRUG00000005727	ef-1a	100	94.156	Takifugu_rubripes
ENSPREG00000008243	-	97	86.161	ENSTNIG00000002617	-	94	86.161	Tetraodon_nigroviridis
ENSPREG00000008243	-	98	94.678	ENSTNIG00000002619	-	100	93.506	Tetraodon_nigroviridis
ENSPREG00000008243	-	100	99.349	ENSXCOG00000001542	-	100	100.000	Xiphophorus_couchianus