EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPREG00000008875 (Gene tree)
Gene ID: 103470572
Gene Symbol: snrnp200
Alias: fb63a09|si:ch211-251j10.5|wu:fb63a09
Full Name: small nuclear ribonucleoprotein U5 subunit 200
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Minus strand
Length: 14823 bases
Position: chrLG9:28553543-28568365
Accession: 103470572
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000013242	ResIII	PF04851.15	6.7e-26	1	2
ENSPREP00000013242	ResIII	PF04851.15	6.7e-26	2	2
ENSPREP00000013313	ResIII	PF04851.15	2.6e-16	1	1
ENSPREP00000013242	DEAD	PF00270.29	5.6e-53	1	2
ENSPREP00000013242	DEAD	PF00270.29	5.6e-53	2	2
ENSPREP00000013313	DEAD	PF00270.29	1.3e-36	1	2
ENSPREP00000013313	DEAD	PF00270.29	1.3e-36	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000013449	-	6255	-	ENSPREP00000013313	2084 (aa)	-	-
ENSPRET00000013378	-	6414	XM_008419116	ENSPREP00000013242	2136 (aa)	XP_008417338	UPI0004A23F80

Gene Model

Click here to download ENSPREG00000008875's gene model file

Pathways

Pathway ID	Pathway Name	Source
pret03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000008875's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPREG00000008875	snrnp200	73	30.511	ENSPREG00000007803	hfm1	92	30.085
ENSPREG00000008875	snrnp200	97	40.072	ENSPREG00000017616	ascc3	89	42.575

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000008875	snrnp200	99	90.449	ENSG00000144028	SNRNP200	100	90.449	Homo_sapiens
ENSPREG00000008875	snrnp200	100	97.144	ENSAPOG00000010223	snrnp200	100	97.144	Acanthochromis_polyacanthus
ENSPREG00000008875	snrnp200	99	90.496	ENSAMEG00000008996	SNRNP200	100	90.496	Ailuropoda_melanoleuca
ENSPREG00000008875	snrnp200	97	96.624	ENSACIG00000001764	snrnp200	98	96.624	Amphilophus_citrinellus
ENSPREG00000008875	snrnp200	100	97.004	ENSAOCG00000024593	snrnp200	100	97.004	Amphiprion_ocellaris
ENSPREG00000008875	snrnp200	97	96.731	ENSAPEG00000012554	snrnp200	100	96.731	Amphiprion_percula
ENSPREG00000008875	snrnp200	100	97.004	ENSATEG00000022522	snrnp200	100	97.004	Anabas_testudineus
ENSPREG00000008875	snrnp200	99	90.665	ENSAPLG00000004313	SNRNP200	100	90.665	Anas_platyrhynchos
ENSPREG00000008875	snrnp200	99	89.988	ENSACAG00000000434	SNRNP200	100	89.988	Anolis_carolinensis
ENSPREG00000008875	snrnp200	99	87.015	ENSANAG00000036625	SNRNP200	100	87.015	Aotus_nancymaae
ENSPREG00000008875	snrnp200	100	96.536	ENSACLG00000011188	snrnp200	100	96.536	Astatotilapia_calliptera
ENSPREG00000008875	snrnp200	99	94.311	ENSAMXG00000005684	snrnp200	100	94.242	Astyanax_mexicanus
ENSPREG00000008875	snrnp200	99	90.262	ENSBTAG00000000848	SNRNP200	100	90.262	Bos_taurus
ENSPREG00000008875	snrnp200	99	90.449	ENSCJAG00000007514	SNRNP200	100	90.449	Callithrix_jacchus
ENSPREG00000008875	snrnp200	99	89.734	ENSCAFG00020019979	SNRNP200	100	91.657	Canis_lupus_dingo
ENSPREG00000008875	snrnp200	99	90.215	ENSCHIG00000020611	SNRNP200	100	90.215	Capra_hircus
ENSPREG00000008875	snrnp200	99	90.496	ENSTSYG00000010467	SNRNP200	100	90.496	Carlito_syrichta
ENSPREG00000008875	snrnp200	99	90.033	ENSCAPG00000017234	SNRNP200	99	90.033	Cavia_aperea
ENSPREG00000008875	snrnp200	99	90.309	ENSCPOG00000006776	SNRNP200	100	90.309	Cavia_porcellus
ENSPREG00000008875	snrnp200	99	90.449	ENSCCAG00000033962	SNRNP200	100	90.449	Cebus_capucinus
ENSPREG00000008875	snrnp200	99	90.449	ENSCATG00000015790	SNRNP200	100	90.449	Cercocebus_atys
ENSPREG00000008875	snrnp200	99	90.356	ENSCLAG00000004116	SNRNP200	100	90.356	Chinchilla_lanigera
ENSPREG00000008875	snrnp200	99	90.449	ENSCSAG00000017369	SNRNP200	100	90.449	Chlorocebus_sabaeus
ENSPREG00000008875	snrnp200	75	92.913	ENSCHOG00000012981	-	58	92.913	Choloepus_hoffmanni
ENSPREG00000008875	snrnp200	99	90.650	ENSCPBG00000022571	SNRNP200	100	90.650	Chrysemys_picta_bellii
ENSPREG00000008875	snrnp200	99	76.108	ENSCING00000005082	-	99	76.202	Ciona_intestinalis
ENSPREG00000008875	snrnp200	94	90.244	ENSCANG00000033932	SNRNP200	100	90.244	Colobus_angolensis_palliatus
ENSPREG00000008875	snrnp200	99	90.449	ENSCGRG00001022610	Snrnp200	100	90.449	Cricetulus_griseus_chok1gshd
ENSPREG00000008875	snrnp200	99	89.949	ENSCGRG00000016472	Snrnp200	100	89.949	Cricetulus_griseus_crigri
ENSPREG00000008875	snrnp200	99	95.736	ENSCSEG00000016399	snrnp200	100	95.736	Cynoglossus_semilaevis
ENSPREG00000008875	snrnp200	100	95.489	ENSCVAG00000017631	snrnp200	100	95.489	Cyprinodon_variegatus
ENSPREG00000008875	snrnp200	100	94.382	ENSDARG00000077536	snrnp200	100	94.382	Danio_rerio
ENSPREG00000008875	snrnp200	99	89.139	ENSDNOG00000011227	SNRNP200	100	89.139	Dasypus_novemcinctus
ENSPREG00000008875	snrnp200	99	87.991	ENSDORG00000005861	Snrnp200	100	87.991	Dipodomys_ordii
ENSPREG00000008875	snrnp200	100	73.802	FBgn0263599	l(3)72Ab	100	73.802	Drosophila_melanogaster
ENSPREG00000008875	snrnp200	95	90.095	ENSETEG00000000162	SNRNP200	74	90.095	Echinops_telfairi
ENSPREG00000008875	snrnp200	83	80.897	ENSEBUG00000016524	snrnp200	95	80.897	Eptatretus_burgeri
ENSPREG00000008875	snrnp200	99	89.464	ENSEASG00005001884	SNRNP200	100	89.371	Equus_asinus_asinus
ENSPREG00000008875	snrnp200	99	90.496	ENSECAG00000019675	SNRNP200	100	90.496	Equus_caballus
ENSPREG00000008875	snrnp200	91	96.970	ENSEEUG00000012178	SNRNP200	93	96.970	Erinaceus_europaeus
ENSPREG00000008875	snrnp200	99	95.583	ENSELUG00000018948	snrnp200	100	95.508	Esox_lucius
ENSPREG00000008875	snrnp200	99	90.543	ENSFCAG00000010699	SNRNP200	100	90.543	Felis_catus
ENSPREG00000008875	snrnp200	93	85.714	ENSFALG00000001368	-	94	85.714	Ficedula_albicollis
ENSPREG00000008875	snrnp200	99	90.262	ENSFDAG00000004683	SNRNP200	100	90.262	Fukomys_damarensis
ENSPREG00000008875	snrnp200	100	98.704	ENSFHEG00000003786	snrnp200	100	98.704	Fundulus_heteroclitus
ENSPREG00000008875	snrnp200	100	94.626	ENSGMOG00000004881	snrnp200	99	94.486	Gadus_morhua
ENSPREG00000008875	snrnp200	100	99.088	ENSGAFG00000010807	snrnp200	100	99.088	Gambusia_affinis
ENSPREG00000008875	snrnp200	100	96.404	ENSGACG00000011474	snrnp200	99	96.404	Gasterosteus_aculeatus
ENSPREG00000008875	snrnp200	95	92.169	ENSGAGG00000016069	SNRNP200	98	95.161	Gopherus_agassizii
ENSPREG00000008875	snrnp200	99	90.449	ENSGGOG00000005174	SNRNP200	100	90.449	Gorilla_gorilla
ENSPREG00000008875	snrnp200	97	94.228	ENSHBUG00000011322	snrnp200	99	94.228	Haplochromis_burtoni
ENSPREG00000008875	snrnp200	99	90.309	ENSHGLG00000006654	SNRNP200	100	90.309	Heterocephalus_glaber_female
ENSPREG00000008875	snrnp200	99	90.309	ENSHGLG00100018594	SNRNP200	100	90.309	Heterocephalus_glaber_male
ENSPREG00000008875	snrnp200	99	90.543	ENSSTOG00000016351	SNRNP200	100	90.543	Ictidomys_tridecemlineatus
ENSPREG00000008875	snrnp200	99	90.215	ENSJJAG00000023659	Snrnp200	100	90.215	Jaculus_jaculus
ENSPREG00000008875	snrnp200	100	97.035	ENSKMAG00000003665	snrnp200	100	97.035	Kryptolebias_marmoratus
ENSPREG00000008875	snrnp200	100	96.957	ENSLBEG00000021585	snrnp200	100	96.957	Labrus_bergylta
ENSPREG00000008875	snrnp200	82	92.436	ENSLACG00000000226	SNRNP200	100	92.436	Latimeria_chalumnae
ENSPREG00000008875	snrnp200	100	93.779	ENSLOCG00000015198	snrnp200	100	93.779	Lepisosteus_oculatus
ENSPREG00000008875	snrnp200	99	90.356	ENSLAFG00000015626	SNRNP200	100	90.356	Loxodonta_africana
ENSPREG00000008875	snrnp200	99	90.403	ENSMFAG00000040174	SNRNP200	99	92.151	Macaca_fascicularis
ENSPREG00000008875	snrnp200	99	90.403	ENSMMUG00000023261	SNRNP200	100	90.403	Macaca_mulatta
ENSPREG00000008875	snrnp200	99	90.356	ENSMNEG00000032398	SNRNP200	100	90.356	Macaca_nemestrina
ENSPREG00000008875	snrnp200	99	90.449	ENSMLEG00000019083	SNRNP200	99	92.151	Mandrillus_leucophaeus
ENSPREG00000008875	snrnp200	100	96.303	ENSMAMG00000007851	snrnp200	100	96.256	Mastacembelus_armatus
ENSPREG00000008875	snrnp200	97	94.228	ENSMZEG00005010787	snrnp200	99	94.228	Maylandia_zebra
ENSPREG00000008875	snrnp200	97	90.373	ENSMGAG00000001831	SNRNP200	99	90.379	Meleagris_gallopavo
ENSPREG00000008875	snrnp200	99	90.496	ENSMAUG00000011825	Snrnp200	100	90.496	Mesocricetus_auratus
ENSPREG00000008875	snrnp200	99	90.496	ENSMICG00000004710	SNRNP200	100	90.496	Microcebus_murinus
ENSPREG00000008875	snrnp200	99	88.717	ENSMOCG00000011814	Snrnp200	100	88.717	Microtus_ochrogaster
ENSPREG00000008875	snrnp200	99	94.828	ENSMMOG00000014167	snrnp200	100	94.757	Mola_mola
ENSPREG00000008875	snrnp200	99	90.590	ENSMODG00000008475	SNRNP200	100	90.590	Monodelphis_domestica
ENSPREG00000008875	snrnp200	100	96.676	ENSMALG00000001973	snrnp200	100	96.676	Monopterus_albus
ENSPREG00000008875	snrnp200	99	90.356	MGP_CAROLIEiJ_G0024250	Snrnp200	100	90.356	Mus_caroli
ENSPREG00000008875	snrnp200	99	90.403	ENSMUSG00000003660	Snrnp200	100	90.403	Mus_musculus
ENSPREG00000008875	snrnp200	99	90.403	MGP_PahariEiJ_G0025695	Snrnp200	100	90.403	Mus_pahari
ENSPREG00000008875	snrnp200	99	90.403	MGP_SPRETEiJ_G0025170	Snrnp200	100	91.160	Mus_spretus
ENSPREG00000008875	snrnp200	99	90.543	ENSMPUG00000008949	SNRNP200	100	90.543	Mustela_putorius_furo
ENSPREG00000008875	snrnp200	99	90.089	ENSMLUG00000010493	SNRNP200	100	90.089	Myotis_lucifugus
ENSPREG00000008875	snrnp200	99	87.219	ENSMLUG00000027511	-	100	87.219	Myotis_lucifugus
ENSPREG00000008875	snrnp200	99	90.449	ENSNGAG00000021993	Snrnp200	100	90.449	Nannospalax_galili
ENSPREG00000008875	snrnp200	90	96.808	ENSNBRG00000017960	snrnp200	98	96.808	Neolamprologus_brichardi
ENSPREG00000008875	snrnp200	99	86.146	ENSNLEG00000000025	SNRNP200	100	86.192	Nomascus_leucogenys
ENSPREG00000008875	snrnp200	99	92.784	ENSMEUG00000010532	SNRNP200	79	90.476	Notamacropus_eugenii
ENSPREG00000008875	snrnp200	96	89.348	ENSOPRG00000015464	SNRNP200	100	87.125	Ochotona_princeps
ENSPREG00000008875	snrnp200	99	90.356	ENSODEG00000008366	SNRNP200	100	90.356	Octodon_degus
ENSPREG00000008875	snrnp200	100	96.582	ENSONIG00000010714	snrnp200	100	96.582	Oreochromis_niloticus
ENSPREG00000008875	snrnp200	99	90.403	ENSOCUG00000009864	SNRNP200	100	90.403	Oryctolagus_cuniculus
ENSPREG00000008875	snrnp200	99	96.111	ENSORLG00000012286	snrnp200	100	96.246	Oryzias_latipes
ENSPREG00000008875	snrnp200	99	96.298	ENSORLG00020004648	snrnp200	100	96.298	Oryzias_latipes_hni
ENSPREG00000008875	snrnp200	99	96.204	ENSORLG00015019114	snrnp200	100	96.204	Oryzias_latipes_hsok
ENSPREG00000008875	snrnp200	99	96.521	ENSOMEG00000011834	snrnp200	100	96.442	Oryzias_melastigma
ENSPREG00000008875	snrnp200	99	90.496	ENSOGAG00000006879	SNRNP200	100	90.496	Otolemur_garnettii
ENSPREG00000008875	snrnp200	99	89.518	ENSOARG00000013949	SNRNP200	100	89.518	Ovis_aries
ENSPREG00000008875	snrnp200	99	90.449	ENSPPAG00000041559	SNRNP200	100	90.449	Pan_paniscus
ENSPREG00000008875	snrnp200	99	90.543	ENSPPRG00000004435	SNRNP200	100	90.543	Panthera_pardus
ENSPREG00000008875	snrnp200	99	90.122	ENSPTIG00000006380	SNRNP200	100	90.122	Panthera_tigris_altaica
ENSPREG00000008875	snrnp200	99	90.449	ENSPTRG00000012230	SNRNP200	100	90.449	Pan_troglodytes
ENSPREG00000008875	snrnp200	99	90.403	ENSPANG00000006017	SNRNP200	100	90.403	Papio_anubis
ENSPREG00000008875	snrnp200	100	94.806	ENSPKIG00000014762	snrnp200	100	94.839	Paramormyrops_kingsleyae
ENSPREG00000008875	snrnp200	99	89.799	ENSPSIG00000008580	SNRNP200	100	89.799	Pelodiscus_sinensis
ENSPREG00000008875	snrnp200	99	90.496	ENSPCIG00000023050	SNRNP200	100	90.496	Phascolarctos_cinereus
ENSPREG00000008875	snrnp200	100	99.485	ENSPFOG00000015110	snrnp200	100	99.485	Poecilia_formosa
ENSPREG00000008875	snrnp200	97	99.560	ENSPLAG00000006711	snrnp200	99	99.560	Poecilia_latipinna
ENSPREG00000008875	snrnp200	97	99.395	ENSPMEG00000021166	snrnp200	99	99.395	Poecilia_mexicana
ENSPREG00000008875	snrnp200	99	90.449	ENSPPYG00000012068	SNRNP200	100	90.449	Pongo_abelii
ENSPREG00000008875	snrnp200	97	95.513	ENSPCAG00000008536	SNRNP200	86	95.745	Procavia_capensis
ENSPREG00000008875	snrnp200	99	90.449	ENSPCOG00000024608	SNRNP200	100	90.449	Propithecus_coquereli
ENSPREG00000008875	snrnp200	96	90.379	ENSPVAG00000005860	SNRNP200	92	90.379	Pteropus_vampyrus
ENSPREG00000008875	snrnp200	99	94.137	ENSPNYG00000017476	snrnp200	100	94.067	Pundamilia_nyererei
ENSPREG00000008875	snrnp200	100	92.134	ENSPNAG00000010998	snrnp200	100	92.134	Pygocentrus_nattereri
ENSPREG00000008875	snrnp200	99	90.496	ENSRNOG00000012157	Snrnp200	100	90.496	Rattus_norvegicus
ENSPREG00000008875	snrnp200	99	90.449	ENSRBIG00000044690	-	100	90.449	Rhinopithecus_bieti
ENSPREG00000008875	snrnp200	99	90.449	ENSRROG00000037952	-	100	90.449	Rhinopithecus_roxellana
ENSPREG00000008875	snrnp200	99	90.449	ENSSBOG00000035471	SNRNP200	100	90.449	Saimiri_boliviensis_boliviensis
ENSPREG00000008875	snrnp200	97	90.421	ENSSHAG00000000758	SNRNP200	99	90.428	Sarcophilus_harrisii
ENSPREG00000008875	snrnp200	99	94.643	ENSSFOG00015018826	snrnp200	100	94.572	Scleropages_formosus
ENSPREG00000008875	snrnp200	100	96.629	ENSSMAG00000005463	snrnp200	100	96.629	Scophthalmus_maximus
ENSPREG00000008875	snrnp200	100	97.191	ENSSDUG00000021410	snrnp200	100	97.191	Seriola_dumerili
ENSPREG00000008875	snrnp200	100	97.051	ENSSLDG00000010884	snrnp200	100	97.051	Seriola_lalandi_dorsalis
ENSPREG00000008875	snrnp200	95	87.936	ENSSARG00000010728	SNRNP200	96	87.903	Sorex_araneus
ENSPREG00000008875	snrnp200	99	91.058	ENSSPUG00000003726	-	100	91.058	Sphenodon_punctatus
ENSPREG00000008875	snrnp200	100	97.238	ENSSPAG00000001842	snrnp200	100	97.238	Stegastes_partitus
ENSPREG00000008875	snrnp200	99	90.590	ENSSSCG00000008127	SNRNP200	100	90.590	Sus_scrofa
ENSPREG00000008875	snrnp200	99	82.515	ENSTGUG00000014475	-	100	82.515	Taeniopygia_guttata
ENSPREG00000008875	snrnp200	99	95.957	ENSTRUG00000001307	snrnp200	100	95.880	Takifugu_rubripes
ENSPREG00000008875	snrnp200	99	91.482	ENSTNIG00000004320	snrnp200	100	83.871	Tetraodon_nigroviridis
ENSPREG00000008875	snrnp200	82	94.366	ENSTBEG00000003329	-	67	94.366	Tupaia_belangeri
ENSPREG00000008875	snrnp200	99	90.309	ENSTTRG00000004983	SNRNP200	100	90.309	Tursiops_truncatus
ENSPREG00000008875	snrnp200	75	83.236	ENSUAMG00000008395	-	95	83.236	Ursus_americanus
ENSPREG00000008875	snrnp200	99	90.543	ENSUMAG00000012385	SNRNP200	100	90.543	Ursus_maritimus
ENSPREG00000008875	snrnp200	87	94.595	ENSVPAG00000006434	SNRNP200	66	94.595	Vicugna_pacos
ENSPREG00000008875	snrnp200	99	90.355	ENSVVUG00000026247	SNRNP200	100	90.355	Vulpes_vulpes
ENSPREG00000008875	snrnp200	99	90.458	ENSXETG00000001243	snrnp200	100	90.458	Xenopus_tropicalis
ENSPREG00000008875	snrnp200	97	99.357	ENSXMAG00000002058	snrnp200	98	99.357	Xiphophorus_maculatus