EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPREG00000009574 (Gene tree)
Gene ID: 103470587
Gene Symbol: lsm1
Alias: zgc:101136
Full Name: LSM1 homolog%2C mRNA degradation associated
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Plus strand
Length: 7724 bases
Position: chrLG9:28828060-28835783
Accession: 103470587
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000014089	LSM	PF01423.22	4.2e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000014233	-	4512	XM_008419145	ENSPREP00000014089	133 (aa)	XP_008417367	UPI0004439C19

Gene Model

Click here to download ENSPREG00000009574's gene model file

Pathways

Pathway ID	Pathway Name	Source
pret03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000009574's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000009574	lsm1	100	83.459	ENSG00000175324	LSM1	100	83.459	Homo_sapiens
ENSPREG00000009574	lsm1	100	96.992	ENSAPOG00000010833	lsm1	100	96.992	Acanthochromis_polyacanthus
ENSPREG00000009574	lsm1	100	83.459	ENSAMEG00000011141	LSM1	100	83.459	Ailuropoda_melanoleuca
ENSPREG00000009574	lsm1	58	98.701	ENSACIG00000019593	lsm1	64	98.701	Amphilophus_citrinellus
ENSPREG00000009574	lsm1	100	96.992	ENSAOCG00000017997	-	100	96.992	Amphiprion_ocellaris
ENSPREG00000009574	lsm1	100	96.992	ENSAOCG00000017096	lsm1	100	96.992	Amphiprion_ocellaris
ENSPREG00000009574	lsm1	100	96.992	ENSAPEG00000011669	lsm1	100	96.992	Amphiprion_percula
ENSPREG00000009574	lsm1	100	98.496	ENSATEG00000022266	lsm1	100	98.496	Anabas_testudineus
ENSPREG00000009574	lsm1	100	83.459	ENSANAG00000027785	LSM1	100	83.459	Aotus_nancymaae
ENSPREG00000009574	lsm1	100	97.744	ENSACLG00000011400	lsm1	100	97.744	Astatotilapia_calliptera
ENSPREG00000009574	lsm1	100	84.211	ENSAMXG00000005441	lsm1	100	84.211	Astyanax_mexicanus
ENSPREG00000009574	lsm1	100	82.707	ENSBTAG00000001612	LSM1	100	82.707	Bos_taurus
ENSPREG00000009574	lsm1	87	49.153	WBGene00003076	lsm-1	90	49.153	Caenorhabditis_elegans
ENSPREG00000009574	lsm1	100	82.707	ENSCJAG00000048015	LSM1	100	82.707	Callithrix_jacchus
ENSPREG00000009574	lsm1	100	83.459	ENSCAFG00000006113	LSM1	100	83.459	Canis_familiaris
ENSPREG00000009574	lsm1	100	83.459	ENSCAFG00020001822	LSM1	100	83.459	Canis_lupus_dingo
ENSPREG00000009574	lsm1	100	83.459	ENSCHIG00000013194	LSM1	100	83.459	Capra_hircus
ENSPREG00000009574	lsm1	100	83.459	ENSTSYG00000010394	LSM1	100	83.459	Carlito_syrichta
ENSPREG00000009574	lsm1	100	83.459	ENSCPOG00000032671	LSM1	100	83.459	Cavia_porcellus
ENSPREG00000009574	lsm1	100	83.459	ENSCCAG00000037171	LSM1	100	83.459	Cebus_capucinus
ENSPREG00000009574	lsm1	100	83.459	ENSCATG00000020377	LSM1	100	83.459	Cercocebus_atys
ENSPREG00000009574	lsm1	100	81.955	ENSCLAG00000001137	LSM1	100	81.955	Chinchilla_lanigera
ENSPREG00000009574	lsm1	100	83.459	ENSCSAG00000015485	LSM1	100	83.459	Chlorocebus_sabaeus
ENSPREG00000009574	lsm1	100	82.707	ENSCHOG00000006030	LSM1	100	82.707	Choloepus_hoffmanni
ENSPREG00000009574	lsm1	95	78.740	ENSCPBG00000006569	LSM1	86	78.740	Chrysemys_picta_bellii
ENSPREG00000009574	lsm1	99	62.879	ENSCING00000013536	-	100	62.121	Ciona_intestinalis
ENSPREG00000009574	lsm1	100	83.459	ENSCANG00000019173	LSM1	100	83.459	Colobus_angolensis_palliatus
ENSPREG00000009574	lsm1	80	71.171	ENSCGRG00001002259	-	97	71.171	Cricetulus_griseus_chok1gshd
ENSPREG00000009574	lsm1	100	82.707	ENSCGRG00001024560	-	100	82.707	Cricetulus_griseus_chok1gshd
ENSPREG00000009574	lsm1	80	71.171	ENSCGRG00000013603	-	97	71.171	Cricetulus_griseus_crigri
ENSPREG00000009574	lsm1	100	82.707	ENSCGRG00000006554	-	100	82.707	Cricetulus_griseus_crigri
ENSPREG00000009574	lsm1	100	95.489	ENSCSEG00000008319	lsm1	92	95.489	Cynoglossus_semilaevis
ENSPREG00000009574	lsm1	100	97.744	ENSCSEG00000010570	lsm1	92	97.744	Cynoglossus_semilaevis
ENSPREG00000009574	lsm1	100	100.000	ENSCVAG00000003871	lsm1	100	100.000	Cyprinodon_variegatus
ENSPREG00000009574	lsm1	100	83.459	ENSDARG00000043177	lsm1	100	83.459	Danio_rerio
ENSPREG00000009574	lsm1	99	78.788	ENSDNOG00000030989	-	99	78.788	Dasypus_novemcinctus
ENSPREG00000009574	lsm1	100	83.459	ENSDNOG00000046387	-	100	83.459	Dasypus_novemcinctus
ENSPREG00000009574	lsm1	100	82.707	ENSDNOG00000032911	-	100	82.707	Dasypus_novemcinctus
ENSPREG00000009574	lsm1	89	64.706	ENSDNOG00000046620	-	100	64.706	Dasypus_novemcinctus
ENSPREG00000009574	lsm1	100	83.459	ENSDORG00000028172	Lsm1	100	83.459	Dipodomys_ordii
ENSPREG00000009574	lsm1	93	58.065	FBgn0261067	LSm1	91	58.065	Drosophila_melanogaster
ENSPREG00000009574	lsm1	100	81.955	ENSEASG00005016677	LSM1	100	81.955	Equus_asinus_asinus
ENSPREG00000009574	lsm1	100	81.955	ENSECAG00000010461	LSM1	100	81.955	Equus_caballus
ENSPREG00000009574	lsm1	100	62.406	ENSEEUG00000015181	LSM1	100	62.406	Erinaceus_europaeus
ENSPREG00000009574	lsm1	100	93.233	ENSELUG00000002322	lsm1	100	93.233	Esox_lucius
ENSPREG00000009574	lsm1	100	76.692	ENSELUG00000023374	lsm1	100	76.692	Esox_lucius
ENSPREG00000009574	lsm1	100	83.459	ENSFCAG00000039335	LSM1	100	83.459	Felis_catus
ENSPREG00000009574	lsm1	89	82.203	ENSFALG00000006723	LSM1	100	82.203	Ficedula_albicollis
ENSPREG00000009574	lsm1	100	83.459	ENSFDAG00000007658	LSM1	100	83.459	Fukomys_damarensis
ENSPREG00000009574	lsm1	100	100.000	ENSFHEG00000009556	lsm1	100	100.000	Fundulus_heteroclitus
ENSPREG00000009574	lsm1	100	96.992	ENSGMOG00000016651	lsm1	98	96.992	Gadus_morhua
ENSPREG00000009574	lsm1	100	81.955	ENSGALG00000003245	LSM1	100	81.955	Gallus_gallus
ENSPREG00000009574	lsm1	100	100.000	ENSGAFG00000011355	lsm1	100	100.000	Gambusia_affinis
ENSPREG00000009574	lsm1	100	96.241	ENSGACG00000011763	lsm1	98	96.241	Gasterosteus_aculeatus
ENSPREG00000009574	lsm1	100	84.962	ENSGAGG00000024065	LSM1	100	84.962	Gopherus_agassizii
ENSPREG00000009574	lsm1	100	83.459	ENSGGOG00000022658	LSM1	100	83.459	Gorilla_gorilla
ENSPREG00000009574	lsm1	100	97.744	ENSHBUG00000010897	lsm1	100	97.744	Haplochromis_burtoni
ENSPREG00000009574	lsm1	100	67.669	ENSHGLG00000017574	-	100	67.669	Heterocephalus_glaber_female
ENSPREG00000009574	lsm1	100	83.459	ENSHGLG00000005711	LSM1	100	83.459	Heterocephalus_glaber_female
ENSPREG00000009574	lsm1	100	67.669	ENSHGLG00100012152	-	100	67.669	Heterocephalus_glaber_male
ENSPREG00000009574	lsm1	100	83.459	ENSHGLG00100017660	LSM1	100	83.459	Heterocephalus_glaber_male
ENSPREG00000009574	lsm1	100	96.241	ENSHCOG00000017233	lsm1	100	96.241	Hippocampus_comes
ENSPREG00000009574	lsm1	100	82.707	ENSIPUG00000002312	LSM1	100	82.707	Ictalurus_punctatus
ENSPREG00000009574	lsm1	62	86.747	ENSSTOG00000026870	LSM1	100	86.747	Ictidomys_tridecemlineatus
ENSPREG00000009574	lsm1	100	82.707	ENSJJAG00000014605	-	100	82.707	Jaculus_jaculus
ENSPREG00000009574	lsm1	100	98.496	ENSKMAG00000003016	lsm1	100	98.496	Kryptolebias_marmoratus
ENSPREG00000009574	lsm1	100	98.496	ENSLBEG00000022352	lsm1	100	98.496	Labrus_bergylta
ENSPREG00000009574	lsm1	90	80.833	ENSLACG00000010947	LSM1	99	80.833	Latimeria_chalumnae
ENSPREG00000009574	lsm1	100	84.962	ENSLOCG00000015149	lsm1	100	84.962	Lepisosteus_oculatus
ENSPREG00000009574	lsm1	100	83.459	ENSLAFG00000003534	LSM1	100	83.459	Loxodonta_africana
ENSPREG00000009574	lsm1	100	83.459	ENSMFAG00000032661	LSM1	100	83.459	Macaca_fascicularis
ENSPREG00000009574	lsm1	100	83.459	ENSMLEG00000034535	LSM1	100	83.459	Mandrillus_leucophaeus
ENSPREG00000009574	lsm1	100	99.248	ENSMAMG00000007464	lsm1	100	99.248	Mastacembelus_armatus
ENSPREG00000009574	lsm1	100	97.744	ENSMZEG00005010321	lsm1	100	97.744	Maylandia_zebra
ENSPREG00000009574	lsm1	100	81.955	ENSMGAG00000002125	LSM1	100	81.955	Meleagris_gallopavo
ENSPREG00000009574	lsm1	100	83.459	ENSMICG00000030726	LSM1	100	83.459	Microcebus_murinus
ENSPREG00000009574	lsm1	100	82.707	ENSMOCG00000022817	Lsm1	100	82.707	Microtus_ochrogaster
ENSPREG00000009574	lsm1	100	97.744	ENSMMOG00000015466	lsm1	100	97.744	Mola_mola
ENSPREG00000009574	lsm1	100	84.211	ENSMODG00000010732	-	100	84.211	Monodelphis_domestica
ENSPREG00000009574	lsm1	58	98.701	ENSMALG00000001478	lsm1	82	98.701	Monopterus_albus
ENSPREG00000009574	lsm1	100	83.459	MGP_CAROLIEiJ_G0030930	Lsm1	100	83.459	Mus_caroli
ENSPREG00000009574	lsm1	100	83.459	ENSMUSG00000037296	Lsm1	100	83.459	Mus_musculus
ENSPREG00000009574	lsm1	100	83.459	MGP_PahariEiJ_G0021400	Lsm1	100	83.459	Mus_pahari
ENSPREG00000009574	lsm1	100	83.459	MGP_SPRETEiJ_G0032049	Lsm1	100	83.459	Mus_spretus
ENSPREG00000009574	lsm1	100	84.211	ENSMPUG00000009883	LSM1	100	84.211	Mustela_putorius_furo
ENSPREG00000009574	lsm1	100	83.459	ENSMLUG00000003734	LSM1	100	83.459	Myotis_lucifugus
ENSPREG00000009574	lsm1	100	82.707	ENSNGAG00000003753	Lsm1	100	82.707	Nannospalax_galili
ENSPREG00000009574	lsm1	58	98.701	ENSNBRG00000017370	lsm1	66	98.701	Neolamprologus_brichardi
ENSPREG00000009574	lsm1	100	83.459	ENSNLEG00000029390	LSM1	100	83.459	Nomascus_leucogenys
ENSPREG00000009574	lsm1	100	84.211	ENSMEUG00000014077	LSM1	100	84.211	Notamacropus_eugenii
ENSPREG00000009574	lsm1	88	78.632	ENSOPRG00000000333	LSM1	100	78.632	Ochotona_princeps
ENSPREG00000009574	lsm1	100	83.459	ENSODEG00000004834	LSM1	100	83.459	Octodon_degus
ENSPREG00000009574	lsm1	100	97.744	ENSONIG00000010782	lsm1	100	97.744	Oreochromis_niloticus
ENSPREG00000009574	lsm1	100	84.211	ENSOANG00000003256	LSM1	100	84.211	Ornithorhynchus_anatinus
ENSPREG00000009574	lsm1	100	83.459	ENSOCUG00000015399	LSM1	100	83.459	Oryctolagus_cuniculus
ENSPREG00000009574	lsm1	100	96.992	ENSORLG00000030288	lsm1	100	96.992	Oryzias_latipes
ENSPREG00000009574	lsm1	100	95.489	ENSORLG00020006213	-	86	95.489	Oryzias_latipes_hni
ENSPREG00000009574	lsm1	100	96.992	ENSORLG00020003941	lsm1	100	96.992	Oryzias_latipes_hni
ENSPREG00000009574	lsm1	100	96.992	ENSORLG00015018350	lsm1	100	96.992	Oryzias_latipes_hsok
ENSPREG00000009574	lsm1	100	96.992	ENSOMEG00000012454	lsm1	100	96.992	Oryzias_melastigma
ENSPREG00000009574	lsm1	100	83.459	ENSOGAG00000015161	LSM1	100	83.459	Otolemur_garnettii
ENSPREG00000009574	lsm1	100	83.459	ENSOARG00000001317	LSM1	100	83.459	Ovis_aries
ENSPREG00000009574	lsm1	100	83.459	ENSPPAG00000032279	LSM1	100	83.459	Pan_paniscus
ENSPREG00000009574	lsm1	100	83.459	ENSPPRG00000014172	-	100	83.459	Panthera_pardus
ENSPREG00000009574	lsm1	100	83.459	ENSPTIG00000010289	LSM1	100	83.459	Panthera_tigris_altaica
ENSPREG00000009574	lsm1	100	83.459	ENSPTRG00000020169	LSM1	100	83.459	Pan_troglodytes
ENSPREG00000009574	lsm1	100	83.459	ENSPANG00000008814	LSM1	100	83.459	Papio_anubis
ENSPREG00000009574	lsm1	100	77.444	ENSPKIG00000019409	LSM1	99	77.444	Paramormyrops_kingsleyae
ENSPREG00000009574	lsm1	100	85.714	ENSPKIG00000001839	lsm1	100	85.714	Paramormyrops_kingsleyae
ENSPREG00000009574	lsm1	97	79.845	ENSPSIG00000012563	LSM1	98	79.845	Pelodiscus_sinensis
ENSPREG00000009574	lsm1	58	98.701	ENSPMGG00000022999	lsm1	73	98.701	Periophthalmus_magnuspinnatus
ENSPREG00000009574	lsm1	85	71.681	ENSPMAG00000002671	lsm1	100	71.681	Petromyzon_marinus
ENSPREG00000009574	lsm1	100	82.707	ENSPCIG00000008880	LSM1	100	82.707	Phascolarctos_cinereus
ENSPREG00000009574	lsm1	100	100.000	ENSPFOG00000016029	lsm1	100	100.000	Poecilia_formosa
ENSPREG00000009574	lsm1	100	100.000	ENSPLAG00000007879	lsm1	100	100.000	Poecilia_latipinna
ENSPREG00000009574	lsm1	100	100.000	ENSPMEG00000023550	lsm1	100	100.000	Poecilia_mexicana
ENSPREG00000009574	lsm1	100	83.459	ENSPPYG00000018521	LSM1	100	83.459	Pongo_abelii
ENSPREG00000009574	lsm1	100	83.459	ENSPCOG00000020901	-	100	83.459	Propithecus_coquereli
ENSPREG00000009574	lsm1	100	83.459	ENSPVAG00000006016	LSM1	100	83.459	Pteropus_vampyrus
ENSPREG00000009574	lsm1	100	97.744	ENSPNYG00000018067	lsm1	100	97.744	Pundamilia_nyererei
ENSPREG00000009574	lsm1	100	83.459	ENSPNAG00000013707	lsm1	100	83.459	Pygocentrus_nattereri
ENSPREG00000009574	lsm1	100	81.955	ENSRNOG00000015375	Lsm1	100	81.955	Rattus_norvegicus
ENSPREG00000009574	lsm1	100	83.459	ENSRBIG00000027449	LSM1	100	83.459	Rhinopithecus_bieti
ENSPREG00000009574	lsm1	100	83.459	ENSRROG00000036074	LSM1	100	83.459	Rhinopithecus_roxellana
ENSPREG00000009574	lsm1	80	44.248	YJL124C	LSM1	66	44.248	Saccharomyces_cerevisiae
ENSPREG00000009574	lsm1	100	84.211	ENSSHAG00000017260	LSM1	100	84.211	Sarcophilus_harrisii
ENSPREG00000009574	lsm1	100	84.962	ENSSFOG00015019528	lsm1	100	84.962	Scleropages_formosus
ENSPREG00000009574	lsm1	100	98.496	ENSSMAG00000004930	lsm1	100	98.496	Scophthalmus_maximus
ENSPREG00000009574	lsm1	100	96.992	ENSSDUG00000021823	lsm1	100	96.992	Seriola_dumerili
ENSPREG00000009574	lsm1	100	96.992	ENSSLDG00000012154	lsm1	100	96.992	Seriola_lalandi_dorsalis
ENSPREG00000009574	lsm1	100	84.962	ENSSPUG00000014878	LSM1	100	84.962	Sphenodon_punctatus
ENSPREG00000009574	lsm1	100	97.744	ENSSPAG00000020548	lsm1	100	97.744	Stegastes_partitus
ENSPREG00000009574	lsm1	100	83.459	ENSSSCG00000039058	LSM1	100	83.459	Sus_scrofa
ENSPREG00000009574	lsm1	100	84.211	ENSTGUG00000004793	LSM1	100	84.211	Taeniopygia_guttata
ENSPREG00000009574	lsm1	100	94.737	ENSTRUG00000025239	lsm1	100	94.737	Takifugu_rubripes
ENSPREG00000009574	lsm1	100	91.729	ENSTNIG00000004055	lsm1	100	91.729	Tetraodon_nigroviridis
ENSPREG00000009574	lsm1	88	81.197	ENSTBEG00000015884	LSM1	100	81.197	Tupaia_belangeri
ENSPREG00000009574	lsm1	100	83.459	ENSTTRG00000004482	LSM1	100	83.459	Tursiops_truncatus
ENSPREG00000009574	lsm1	100	83.459	ENSUAMG00000004103	LSM1	100	83.459	Ursus_americanus
ENSPREG00000009574	lsm1	100	83.459	ENSUMAG00000009132	LSM1	100	83.459	Ursus_maritimus
ENSPREG00000009574	lsm1	58	89.610	ENSVPAG00000011593	LSM1	100	89.610	Vicugna_pacos
ENSPREG00000009574	lsm1	61	62.963	ENSVVUG00000014880	-	86	62.963	Vulpes_vulpes
ENSPREG00000009574	lsm1	100	83.459	ENSVVUG00000020191	LSM1	100	83.459	Vulpes_vulpes
ENSPREG00000009574	lsm1	100	79.562	ENSXETG00000009004	lsm1	100	79.562	Xenopus_tropicalis
ENSPREG00000009574	lsm1	100	98.496	ENSXCOG00000015631	lsm1	100	98.496	Xiphophorus_couchianus
ENSPREG00000009574	lsm1	100	98.496	ENSXMAG00000026637	lsm1	100	98.496	Xiphophorus_maculatus