EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPREG00000009667 (Gene tree)
Gene ID: 103474154
Gene Symbol: srsf1a
Alias: sfrs1a|sfrs1l|wu:fb52g10|wu:fb97g12|zgc:66146
Full Name: serine/arginine-rich splicing factor 1
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Minus strand
Length: 13461 bases
Position: chrLG13:2094827-2108287
Accession: 103474154
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000014267	RRM_1	PF00076.22	1.9e-32	1	2
ENSPREP00000014267	RRM_1	PF00076.22	1.9e-32	2	2
ENSPREP00000014255	RRM_1	PF00076.22	3e-32	1	2
ENSPREP00000014255	RRM_1	PF00076.22	3e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000014412	-	756	-	ENSPREP00000014267	251 (aa)	-	-
ENSPRET00000014400	-	1397	XM_008424929	ENSPREP00000014255	245 (aa)	XP_008423151	UPI000293BDF9

Gene Model

Click here to download ENSPREG00000009667's gene model file

Pathways

Pathway ID	Pathway Name	Source
pret03040	Spliceosome	KEGG
pret05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000009667's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPREG00000009667	srsf1a	72	66.667	ENSPREG00000013165	srsf9	68	66.667
ENSPREG00000009667	srsf1a	69	40.102	ENSPREG00000010381	srsf5b	62	42.487
ENSPREG00000009667	srsf1a	66	41.304	ENSPREG00000018091	srsf5a	57	39.572
ENSPREG00000009667	srsf1a	79	86.432	ENSPREG00000016792	-	79	86.667
ENSPREG00000009667	srsf1a	68	46.821	ENSPREG00000009639	srsf4	56	40.394

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000009667	srsf1a	98	85.185	ENSG00000136450	SRSF1	95	91.935	Homo_sapiens
ENSPREG00000009667	srsf1a	78	89.005	ENSAPOG00000008542	-	80	88.442	Acanthochromis_polyacanthus
ENSPREG00000009667	srsf1a	100	99.184	ENSAPOG00000002748	-	100	99.184	Acanthochromis_polyacanthus
ENSPREG00000009667	srsf1a	78	89.005	ENSAMEG00000002635	SRSF1	77	89.529	Ailuropoda_melanoleuca
ENSPREG00000009667	srsf1a	79	98.964	ENSACIG00000008091	srsf1a	83	97.927	Amphilophus_citrinellus
ENSPREG00000009667	srsf1a	78	88.442	ENSAOCG00000000337	-	80	88.442	Amphiprion_ocellaris
ENSPREG00000009667	srsf1a	100	99.592	ENSAOCG00000010671	-	100	99.592	Amphiprion_ocellaris
ENSPREG00000009667	srsf1a	100	99.592	ENSAPEG00000009915	-	100	99.592	Amphiprion_percula
ENSPREG00000009667	srsf1a	78	88.442	ENSAPEG00000023352	-	79	88.442	Amphiprion_percula
ENSPREG00000009667	srsf1a	81	86.869	ENSATEG00000021567	-	80	89.062	Anabas_testudineus
ENSPREG00000009667	srsf1a	100	98.785	ENSATEG00000022403	-	100	98.785	Anabas_testudineus
ENSPREG00000009667	srsf1a	78	89.119	ENSACAG00000005542	-	78	91.192	Anolis_carolinensis
ENSPREG00000009667	srsf1a	79	67.526	ENSANAG00000025417	-	73	68.063	Aotus_nancymaae
ENSPREG00000009667	srsf1a	98	85.185	ENSANAG00000020583	-	95	89.855	Aotus_nancymaae
ENSPREG00000009667	srsf1a	95	80.753	ENSAMXG00000035996	srsf1a	79	88.889	Astyanax_mexicanus
ENSPREG00000009667	srsf1a	53	74.194	ENSAMXG00000024373	-	72	77.419	Astyanax_mexicanus
ENSPREG00000009667	srsf1a	98	85.185	ENSBTAG00000014766	SRSF1	78	92.228	Bos_taurus
ENSPREG00000009667	srsf1a	78	82.902	ENSCJAG00000008111	-	86	83.938	Callithrix_jacchus
ENSPREG00000009667	srsf1a	98	85.185	ENSCJAG00000041713	-	95	89.855	Callithrix_jacchus
ENSPREG00000009667	srsf1a	98	85.185	ENSCAFG00000017430	SRSF1	76	92.228	Canis_familiaris
ENSPREG00000009667	srsf1a	98	85.185	ENSCAFG00020025632	-	76	92.228	Canis_lupus_dingo
ENSPREG00000009667	srsf1a	78	90.155	ENSCHIG00000010787	SRSF1	78	92.228	Capra_hircus
ENSPREG00000009667	srsf1a	98	85.185	ENSTSYG00000013899	-	95	89.855	Carlito_syrichta
ENSPREG00000009667	srsf1a	98	85.185	ENSCPOG00000032681	-	78	92.228	Cavia_porcellus
ENSPREG00000009667	srsf1a	98	85.185	ENSCCAG00000029484	-	95	89.855	Cebus_capucinus
ENSPREG00000009667	srsf1a	98	85.185	ENSCATG00000042294	-	95	89.855	Cercocebus_atys
ENSPREG00000009667	srsf1a	98	85.185	ENSCLAG00000014707	-	78	92.228	Chinchilla_lanigera
ENSPREG00000009667	srsf1a	98	84.362	ENSCSAG00000005642	-	76	91.192	Chlorocebus_sabaeus
ENSPREG00000009667	srsf1a	78	90.155	ENSCHOG00000001899	SRSF1	78	92.228	Choloepus_hoffmanni
ENSPREG00000009667	srsf1a	98	84.774	ENSCPBG00000009851	-	78	91.710	Chrysemys_picta_bellii
ENSPREG00000009667	srsf1a	98	85.185	ENSCANG00000029726	-	95	89.855	Colobus_angolensis_palliatus
ENSPREG00000009667	srsf1a	98	85.185	ENSCGRG00001000670	Srsf1	76	92.228	Cricetulus_griseus_chok1gshd
ENSPREG00000009667	srsf1a	98	85.185	ENSCGRG00000005590	Srsf1	78	92.228	Cricetulus_griseus_crigri
ENSPREG00000009667	srsf1a	78	82.212	ENSCSEG00000009973	-	79	82.212	Cynoglossus_semilaevis
ENSPREG00000009667	srsf1a	100	91.429	ENSCSEG00000014272	-	99	91.429	Cynoglossus_semilaevis
ENSPREG00000009667	srsf1a	100	100.000	ENSCVAG00000018617	-	100	100.000	Cyprinodon_variegatus
ENSPREG00000009667	srsf1a	78	87.113	ENSCVAG00000005458	-	95	83.246	Cyprinodon_variegatus
ENSPREG00000009667	srsf1a	78	90.155	ENSDARG00000017843	srsf1b	79	92.228	Danio_rerio
ENSPREG00000009667	srsf1a	78	84.729	ENSDARG00000057691	srsf1a	99	85.864	Danio_rerio
ENSPREG00000009667	srsf1a	98	85.185	ENSDNOG00000011737	-	76	92.228	Dasypus_novemcinctus
ENSPREG00000009667	srsf1a	98	85.185	ENSDORG00000015082	Srsf1	78	92.228	Dipodomys_ordii
ENSPREG00000009667	srsf1a	73	90.000	ENSETEG00000005349	-	63	90.164	Echinops_telfairi
ENSPREG00000009667	srsf1a	98	85.185	ENSEASG00005002922	-	76	92.228	Equus_asinus_asinus
ENSPREG00000009667	srsf1a	78	90.155	ENSECAG00000016654	SRSF1	78	92.228	Equus_caballus
ENSPREG00000009667	srsf1a	73	91.111	ENSEEUG00000009255	-	63	91.257	Erinaceus_europaeus
ENSPREG00000009667	srsf1a	78	93.229	ENSELUG00000021646	srsf1a	76	93.750	Esox_lucius
ENSPREG00000009667	srsf1a	98	85.185	ENSFCAG00000002250	-	95	88.421	Felis_catus
ENSPREG00000009667	srsf1a	78	94.340	ENSFALG00000005062	-	76	73.057	Ficedula_albicollis
ENSPREG00000009667	srsf1a	98	85.185	ENSFDAG00000010646	-	78	92.228	Fukomys_damarensis
ENSPREG00000009667	srsf1a	100	99.592	ENSFHEG00000003174	srsf1a	100	99.592	Fundulus_heteroclitus
ENSPREG00000009667	srsf1a	80	89.286	ENSGMOG00000014787	-	80	88.482	Gadus_morhua
ENSPREG00000009667	srsf1a	78	89.637	ENSGALG00000005525	SRSF1	78	91.710	Gallus_gallus
ENSPREG00000009667	srsf1a	78	86.387	ENSGACG00000020621	srsf1b	78	85.864	Gasterosteus_aculeatus
ENSPREG00000009667	srsf1a	98	84.774	ENSGAGG00000022965	-	76	91.710	Gopherus_agassizii
ENSPREG00000009667	srsf1a	98	85.185	ENSGGOG00000004386	SRSF1	95	89.855	Gorilla_gorilla
ENSPREG00000009667	srsf1a	100	99.184	ENSHBUG00000016788	srsf1a	100	99.184	Haplochromis_burtoni
ENSPREG00000009667	srsf1a	66	89.634	ENSHGLG00000000600	-	76	92.073	Heterocephalus_glaber_female
ENSPREG00000009667	srsf1a	66	89.634	ENSHGLG00000000669	-	76	92.073	Heterocephalus_glaber_female
ENSPREG00000009667	srsf1a	98	85.185	ENSHGLG00100016906	-	78	92.228	Heterocephalus_glaber_male
ENSPREG00000009667	srsf1a	79	90.452	ENSHCOG00000018918	srsf1a	78	91.960	Hippocampus_comes
ENSPREG00000009667	srsf1a	78	89.583	ENSIPUG00000008750	srsf1b	78	92.188	Ictalurus_punctatus
ENSPREG00000009667	srsf1a	79	86.567	ENSIPUG00000017039	srsf1a	80	88.557	Ictalurus_punctatus
ENSPREG00000009667	srsf1a	98	85.185	ENSSTOG00000000243	-	91	91.758	Ictidomys_tridecemlineatus
ENSPREG00000009667	srsf1a	98	85.185	ENSJJAG00000000102	-	78	92.228	Jaculus_jaculus
ENSPREG00000009667	srsf1a	100	98.780	ENSKMAG00000019232	srsf1a	100	98.780	Kryptolebias_marmoratus
ENSPREG00000009667	srsf1a	78	80.102	ENSLBEG00000015294	-	79	81.633	Labrus_bergylta
ENSPREG00000009667	srsf1a	100	98.776	ENSLBEG00000020864	-	100	98.776	Labrus_bergylta
ENSPREG00000009667	srsf1a	78	90.104	ENSLACG00000014160	srsf1a	72	90.104	Latimeria_chalumnae
ENSPREG00000009667	srsf1a	78	89.062	ENSLOCG00000005994	srsf1a	78	92.188	Lepisosteus_oculatus
ENSPREG00000009667	srsf1a	78	90.155	ENSLAFG00000025743	SRSF1	78	92.228	Loxodonta_africana
ENSPREG00000009667	srsf1a	98	85.185	ENSMFAG00000040003	-	95	89.855	Macaca_fascicularis
ENSPREG00000009667	srsf1a	99	81.967	ENSMMUG00000003260	-	93	89.583	Macaca_mulatta
ENSPREG00000009667	srsf1a	98	85.185	ENSMMUG00000004725	SRSF1	95	89.855	Macaca_mulatta
ENSPREG00000009667	srsf1a	99	82.377	ENSMNEG00000015983	-	76	89.637	Macaca_nemestrina
ENSPREG00000009667	srsf1a	98	85.185	ENSMNEG00000027680	-	95	89.855	Macaca_nemestrina
ENSPREG00000009667	srsf1a	78	90.155	ENSMLEG00000040509	SRSF1	78	92.228	Mandrillus_leucophaeus
ENSPREG00000009667	srsf1a	98	82.988	ENSMLEG00000015243	-	76	87.958	Mandrillus_leucophaeus
ENSPREG00000009667	srsf1a	78	92.188	ENSMAMG00000019691	-	80	91.667	Mastacembelus_armatus
ENSPREG00000009667	srsf1a	100	99.592	ENSMAMG00000018454	-	100	99.592	Mastacembelus_armatus
ENSPREG00000009667	srsf1a	78	90.052	ENSMAMG00000019687	-	78	90.052	Mastacembelus_armatus
ENSPREG00000009667	srsf1a	98	85.185	ENSMAUG00000021845	Srsf1	78	92.228	Mesocricetus_auratus
ENSPREG00000009667	srsf1a	98	85.185	ENSMICG00000013639	-	95	89.855	Microcebus_murinus
ENSPREG00000009667	srsf1a	98	85.185	ENSMOCG00000001996	Srsf1	78	92.228	Microtus_ochrogaster
ENSPREG00000009667	srsf1a	100	92.245	ENSMMOG00000014354	srsf1a	100	92.245	Mola_mola
ENSPREG00000009667	srsf1a	73	90.608	ENSMODG00000014781	-	63	90.217	Monodelphis_domestica
ENSPREG00000009667	srsf1a	79	98.964	ENSMALG00000017129	-	76	98.964	Monopterus_albus
ENSPREG00000009667	srsf1a	81	78.283	ENSMALG00000007763	-	77	82.199	Monopterus_albus
ENSPREG00000009667	srsf1a	98	85.185	MGP_CAROLIEiJ_G0016943	Srsf1	91	91.758	Mus_caroli
ENSPREG00000009667	srsf1a	98	85.185	ENSMUSG00000018379	Srsf1	91	91.758	Mus_musculus
ENSPREG00000009667	srsf1a	98	85.185	MGP_PahariEiJ_G0018074	Srsf1	86	85.870	Mus_pahari
ENSPREG00000009667	srsf1a	98	85.185	MGP_SPRETEiJ_G0017790	Srsf1	91	91.758	Mus_spretus
ENSPREG00000009667	srsf1a	78	90.155	ENSMPUG00000015369	SRSF1	78	92.228	Mustela_putorius_furo
ENSPREG00000009667	srsf1a	78	90.155	ENSMLUG00000011040	SRSF1	78	92.228	Myotis_lucifugus
ENSPREG00000009667	srsf1a	80	87.817	ENSMLUG00000023995	-	77	87.435	Myotis_lucifugus
ENSPREG00000009667	srsf1a	78	90.155	ENSNGAG00000011395	Srsf1	78	92.228	Nannospalax_galili
ENSPREG00000009667	srsf1a	99	74.590	ENSNBRG00000008041	srsf1b	78	77.487	Neolamprologus_brichardi
ENSPREG00000009667	srsf1a	98	85.185	ENSNLEG00000008088	-	95	89.855	Nomascus_leucogenys
ENSPREG00000009667	srsf1a	53	88.636	ENSOPRG00000001234	-	72	91.667	Ochotona_princeps
ENSPREG00000009667	srsf1a	98	85.185	ENSODEG00000011481	-	78	92.228	Octodon_degus
ENSPREG00000009667	srsf1a	79	91.282	ENSONIG00000004860	-	79	90.625	Oreochromis_niloticus
ENSPREG00000009667	srsf1a	100	99.184	ENSONIG00000013160	-	99	99.184	Oreochromis_niloticus
ENSPREG00000009667	srsf1a	99	64.634	ENSOCUG00000010894	-	75	72.487	Oryctolagus_cuniculus
ENSPREG00000009667	srsf1a	100	99.592	ENSORLG00000004580	srsf1a	100	99.592	Oryzias_latipes
ENSPREG00000009667	srsf1a	100	99.592	ENSORLG00020009456	srsf1a	100	99.592	Oryzias_latipes_hni
ENSPREG00000009667	srsf1a	100	99.184	ENSORLG00015014384	srsf1a	100	99.184	Oryzias_latipes_hsok
ENSPREG00000009667	srsf1a	92	97.788	ENSOMEG00000004106	srsf1a	93	97.788	Oryzias_melastigma
ENSPREG00000009667	srsf1a	82	90.686	ENSOGAG00000025950	-	78	92.228	Otolemur_garnettii
ENSPREG00000009667	srsf1a	78	89.005	ENSOARG00000008323	SRSF1	77	89.005	Ovis_aries
ENSPREG00000009667	srsf1a	98	85.185	ENSPPAG00000043403	-	95	89.855	Pan_paniscus
ENSPREG00000009667	srsf1a	98	85.185	ENSPPRG00000004238	-	95	88.421	Panthera_pardus
ENSPREG00000009667	srsf1a	98	85.185	ENSPTRG00000049077	SRSF1	95	89.855	Pan_troglodytes
ENSPREG00000009667	srsf1a	99	67.755	ENSPANG00000030275	-	75	68.041	Papio_anubis
ENSPREG00000009667	srsf1a	98	85.185	ENSPANG00000022305	-	95	89.855	Papio_anubis
ENSPREG00000009667	srsf1a	78	89.062	ENSPKIG00000012857	srsf1b	78	92.188	Paramormyrops_kingsleyae
ENSPREG00000009667	srsf1a	78	91.146	ENSPKIG00000007204	srsf1a	83	91.146	Paramormyrops_kingsleyae
ENSPREG00000009667	srsf1a	78	82.383	ENSPSIG00000009000	-	72	90.977	Pelodiscus_sinensis
ENSPREG00000009667	srsf1a	100	96.825	ENSPMGG00000013112	-	100	96.825	Periophthalmus_magnuspinnatus
ENSPREG00000009667	srsf1a	96	83.051	ENSPMGG00000005467	-	79	88.083	Periophthalmus_magnuspinnatus
ENSPREG00000009667	srsf1a	98	85.185	ENSPEMG00000021416	Srsf1	78	92.228	Peromyscus_maniculatus_bairdii
ENSPREG00000009667	srsf1a	78	90.206	ENSPCIG00000006076	-	78	92.268	Phascolarctos_cinereus
ENSPREG00000009667	srsf1a	79	87.310	ENSPFOG00000018325	-	69	87.565	Poecilia_formosa
ENSPREG00000009667	srsf1a	79	87.310	ENSPLAG00000008416	srsf1b	78	87.565	Poecilia_latipinna
ENSPREG00000009667	srsf1a	50	100.000	ENSPMEG00000020607	-	99	100.000	Poecilia_mexicana
ENSPREG00000009667	srsf1a	79	87.310	ENSPMEG00000002388	-	78	87.565	Poecilia_mexicana
ENSPREG00000009667	srsf1a	50	100.000	ENSPMEG00000014312	-	99	100.000	Poecilia_mexicana
ENSPREG00000009667	srsf1a	98	85.185	ENSPPYG00000008240	SRSF1	78	92.228	Pongo_abelii
ENSPREG00000009667	srsf1a	78	90.155	ENSPCAG00000005199	SRSF1	78	92.228	Procavia_capensis
ENSPREG00000009667	srsf1a	98	85.185	ENSPCOG00000023654	-	95	89.855	Propithecus_coquereli
ENSPREG00000009667	srsf1a	79	72.222	ENSPCOG00000025736	-	93	72.775	Propithecus_coquereli
ENSPREG00000009667	srsf1a	53	97.143	ENSPVAG00000000519	-	53	97.143	Pteropus_vampyrus
ENSPREG00000009667	srsf1a	78	91.623	ENSPNAG00000014601	srsf1b	78	91.623	Pygocentrus_nattereri
ENSPREG00000009667	srsf1a	95	84.052	ENSPNAG00000022241	srsf1a	78	91.099	Pygocentrus_nattereri
ENSPREG00000009667	srsf1a	78	90.155	ENSRNOG00000050323	Srsf1	78	92.228	Rattus_norvegicus
ENSPREG00000009667	srsf1a	98	85.185	ENSRBIG00000034445	-	95	89.855	Rhinopithecus_bieti
ENSPREG00000009667	srsf1a	98	85.185	ENSRROG00000041506	-	95	89.855	Rhinopithecus_roxellana
ENSPREG00000009667	srsf1a	98	85.185	ENSSBOG00000025377	-	95	89.855	Saimiri_boliviensis_boliviensis
ENSPREG00000009667	srsf1a	78	90.206	ENSSHAG00000002552	-	78	92.268	Sarcophilus_harrisii
ENSPREG00000009667	srsf1a	78	92.147	ENSSFOG00015004800	srsf1a	77	92.147	Scleropages_formosus
ENSPREG00000009667	srsf1a	78	85.000	ENSSMAG00000009719	-	78	85.000	Scophthalmus_maximus
ENSPREG00000009667	srsf1a	100	97.551	ENSSMAG00000007018	-	100	97.551	Scophthalmus_maximus
ENSPREG00000009667	srsf1a	99	72.177	ENSSDUG00000003929	-	83	79.798	Seriola_dumerili
ENSPREG00000009667	srsf1a	100	98.776	ENSSDUG00000011303	-	100	98.776	Seriola_dumerili
ENSPREG00000009667	srsf1a	100	98.776	ENSSLDG00000010543	-	100	98.776	Seriola_lalandi_dorsalis
ENSPREG00000009667	srsf1a	78	79.167	ENSSLDG00000016868	-	76	78.646	Seriola_lalandi_dorsalis
ENSPREG00000009667	srsf1a	74	80.978	ENSSLDG00000016895	-	77	83.696	Seriola_lalandi_dorsalis
ENSPREG00000009667	srsf1a	73	91.111	ENSSARG00000010949	-	63	91.257	Sorex_araneus
ENSPREG00000009667	srsf1a	98	84.774	ENSSPUG00000000804	-	93	90.217	Sphenodon_punctatus
ENSPREG00000009667	srsf1a	100	99.187	ENSSPAG00000022562	-	100	99.187	Stegastes_partitus
ENSPREG00000009667	srsf1a	78	84.951	ENSSPAG00000014152	-	80	84.951	Stegastes_partitus
ENSPREG00000009667	srsf1a	98	85.185	ENSSSCG00000017626	-	78	92.228	Sus_scrofa
ENSPREG00000009667	srsf1a	53	87.970	ENSTGUG00000008416	-	72	90.977	Taeniopygia_guttata
ENSPREG00000009667	srsf1a	100	98.776	ENSTRUG00000003691	srsf1a	100	98.776	Takifugu_rubripes
ENSPREG00000009667	srsf1a	100	98.776	ENSTNIG00000016223	srsf1a	99	98.776	Tetraodon_nigroviridis
ENSPREG00000009667	srsf1a	73	88.333	ENSTBEG00000015378	-	62	91.111	Tupaia_belangeri
ENSPREG00000009667	srsf1a	53	88.636	ENSTTRG00000007310	SRSF1	72	91.667	Tursiops_truncatus
ENSPREG00000009667	srsf1a	78	90.155	ENSUAMG00000009858	SRSF1	78	92.228	Ursus_americanus
ENSPREG00000009667	srsf1a	98	85.185	ENSUMAG00000000455	-	76	92.228	Ursus_maritimus
ENSPREG00000009667	srsf1a	78	89.637	ENSVPAG00000010094	SRSF1	78	91.710	Vicugna_pacos
ENSPREG00000009667	srsf1a	98	85.185	ENSVVUG00000011882	-	76	92.228	Vulpes_vulpes
ENSPREG00000009667	srsf1a	78	92.147	ENSXETG00000008954	srsf1	79	84.434	Xenopus_tropicalis
ENSPREG00000009667	srsf1a	100	100.000	ENSXMAG00000011766	srsf1a	100	100.000	Xiphophorus_maculatus