EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPREG00000009940 (Gene tree)
Gene ID: 103479258
Gene Symbol: upf1
Alias: rent1|wu:fi40f07|wu:fj48a01|zgc:55472
Full Name: regulator of nonsense transcripts 1-like
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Plus strand
Length: 31483 bases
Position: chrLG17:7980405-8011887
Accession: 103479258
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000014749	UPF1_Zn_bind	PF09416.10	7.8e-75	1	1
ENSPREP00000014749	ResIII	PF04851.15	2.2e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000014900	-	6720	XM_008433602	ENSPREP00000014749	1109 (aa)	XP_008431824	UPI0004A4F346

Gene Model

Click here to download ENSPREG00000009940's gene model file

Pathways

Pathway ID	Pathway Name	Source
pret03013	RNA transport	KEGG
pret03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000009940's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPREG00000009940	upf1	100	90.746	ENSPREG00000011247	-	100	91.105

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000009940	upf1	100	89.735	ENSG00000005007	UPF1	100	89.735	Homo_sapiens
ENSPREG00000009940	upf1	100	91.285	ENSAPOG00000010916	-	100	91.734	Acanthochromis_polyacanthus
ENSPREG00000009940	upf1	100	94.978	ENSAPOG00000023773	upf1	100	94.978	Acanthochromis_polyacanthus
ENSPREG00000009940	upf1	100	89.085	ENSAMEG00000011474	UPF1	100	89.173	Ailuropoda_melanoleuca
ENSPREG00000009940	upf1	93	91.338	ENSACIG00000010985	-	100	91.988	Amphilophus_citrinellus
ENSPREG00000009940	upf1	100	93.508	ENSACIG00000019949	upf1	100	94.239	Amphilophus_citrinellus
ENSPREG00000009940	upf1	100	91.375	ENSAOCG00000006352	-	100	91.824	Amphiprion_ocellaris
ENSPREG00000009940	upf1	100	94.978	ENSAOCG00000018519	upf1	100	94.978	Amphiprion_ocellaris
ENSPREG00000009940	upf1	100	94.978	ENSAPEG00000016344	upf1	100	94.978	Amphiprion_percula
ENSPREG00000009940	upf1	100	91.285	ENSAPEG00000006292	-	100	91.644	Amphiprion_percula
ENSPREG00000009940	upf1	100	91.195	ENSATEG00000016606	-	100	91.644	Anabas_testudineus
ENSPREG00000009940	upf1	100	94.002	ENSATEG00000017867	upf1	100	94.002	Anabas_testudineus
ENSPREG00000009940	upf1	95	91.455	ENSAPLG00000009175	UPF1	100	91.455	Anas_platyrhynchos
ENSPREG00000009940	upf1	95	89.169	ENSANAG00000024107	UPF1	96	89.169	Aotus_nancymaae
ENSPREG00000009940	upf1	100	93.508	ENSACLG00000007181	upf1	100	94.239	Astatotilapia_calliptera
ENSPREG00000009940	upf1	100	91.145	ENSACLG00000022630	-	100	91.734	Astatotilapia_calliptera
ENSPREG00000009940	upf1	100	91.989	ENSAMXG00000042187	upf1	100	92.709	Astyanax_mexicanus
ENSPREG00000009940	upf1	100	89.192	ENSBTAG00000020922	UPF1	100	89.192	Bos_taurus
ENSPREG00000009940	upf1	89	50.851	WBGene00004880	smg-2	91	50.851	Caenorhabditis_elegans
ENSPREG00000009940	upf1	100	88.869	ENSCJAG00000019627	UPF1	100	88.869	Callithrix_jacchus
ENSPREG00000009940	upf1	100	88.957	ENSCAFG00000014578	UPF1	100	88.957	Canis_familiaris
ENSPREG00000009940	upf1	100	89.823	ENSCAFG00020012347	UPF1	100	89.823	Canis_lupus_dingo
ENSPREG00000009940	upf1	100	90.062	ENSCHIG00000011018	UPF1	100	90.062	Capra_hircus
ENSPREG00000009940	upf1	94	91.243	ENSTSYG00000008877	UPF1	98	91.243	Carlito_syrichta
ENSPREG00000009940	upf1	95	90.587	ENSCAPG00000005758	UPF1	95	91.337	Cavia_aperea
ENSPREG00000009940	upf1	100	90.205	ENSCPOG00000025463	UPF1	100	90.205	Cavia_porcellus
ENSPREG00000009940	upf1	100	89.735	ENSCCAG00000032175	UPF1	100	89.735	Cebus_capucinus
ENSPREG00000009940	upf1	94	91.399	ENSCATG00000040306	UPF1	98	91.399	Cercocebus_atys
ENSPREG00000009940	upf1	95	91.020	ENSCLAG00000004037	UPF1	99	91.268	Chinchilla_lanigera
ENSPREG00000009940	upf1	100	89.735	ENSCSAG00000005276	UPF1	100	89.735	Chlorocebus_sabaeus
ENSPREG00000009940	upf1	100	90.302	ENSCPBG00000012513	UPF1	100	90.302	Chrysemys_picta_bellii
ENSPREG00000009940	upf1	76	79.859	ENSCING00000021399	-	99	79.157	Ciona_intestinalis
ENSPREG00000009940	upf1	99	71.658	ENSCSAVG00000006533	-	99	72.217	Ciona_savignyi
ENSPREG00000009940	upf1	94	91.149	ENSCANG00000029819	UPF1	97	91.149	Colobus_angolensis_palliatus
ENSPREG00000009940	upf1	100	89.716	ENSCGRG00001021067	Upf1	100	89.716	Cricetulus_griseus_chok1gshd
ENSPREG00000009940	upf1	94	90.704	ENSCGRG00000013480	Upf1	98	90.704	Cricetulus_griseus_crigri
ENSPREG00000009940	upf1	100	91.277	ENSCSEG00000016159	-	100	91.277	Cynoglossus_semilaevis
ENSPREG00000009940	upf1	100	88.219	ENSCSEG00000017239	upf1	100	88.309	Cynoglossus_semilaevis
ENSPREG00000009940	upf1	100	90.746	ENSCVAG00000010561	upf1	100	91.195	Cyprinodon_variegatus
ENSPREG00000009940	upf1	100	92.079	ENSDARG00000016302	upf1	100	92.529	Danio_rerio
ENSPREG00000009940	upf1	94	88.805	ENSDORG00000009984	Upf1	95	88.805	Dipodomys_ordii
ENSPREG00000009940	upf1	84	72.601	FBgn0030354	Upf1	81	71.162	Drosophila_melanogaster
ENSPREG00000009940	upf1	54	86.589	ENSEBUG00000010069	upf1	96	86.755	Eptatretus_burgeri
ENSPREG00000009940	upf1	100	89.912	ENSEASG00005006549	UPF1	100	89.912	Equus_asinus_asinus
ENSPREG00000009940	upf1	100	89.912	ENSECAG00000010639	UPF1	100	89.912	Equus_caballus
ENSPREG00000009940	upf1	100	92.162	ENSELUG00000020917	upf1	100	92.446	Esox_lucius
ENSPREG00000009940	upf1	100	90.958	ENSELUG00000012916	-	100	91.316	Esox_lucius
ENSPREG00000009940	upf1	100	88.957	ENSFCAG00000009757	UPF1	100	88.957	Felis_catus
ENSPREG00000009940	upf1	95	91.966	ENSFALG00000009312	UPF1	96	91.966	Ficedula_albicollis
ENSPREG00000009940	upf1	94	91.174	ENSFDAG00000014816	UPF1	99	91.174	Fukomys_damarensis
ENSPREG00000009940	upf1	100	93.548	ENSFHEG00000006428	upf1	100	93.548	Fundulus_heteroclitus
ENSPREG00000009940	upf1	86	93.267	ENSFHEG00000016276	-	96	93.267	Fundulus_heteroclitus
ENSPREG00000009940	upf1	100	90.044	ENSGMOG00000007541	upf1	100	90.667	Gadus_morhua
ENSPREG00000009940	upf1	100	90.071	ENSGALG00000003220	UPF1	100	90.160	Gallus_gallus
ENSPREG00000009940	upf1	100	90.925	ENSGAFG00000004831	upf1	100	91.285	Gambusia_affinis
ENSPREG00000009940	upf1	62	97.550	ENSGAFG00000015443	-	85	97.550	Gambusia_affinis
ENSPREG00000009940	upf1	100	90.795	ENSGAGG00000022217	UPF1	100	90.885	Gopherus_agassizii
ENSPREG00000009940	upf1	94	92.103	ENSGGOG00000002608	UPF1	99	92.103	Gorilla_gorilla
ENSPREG00000009940	upf1	88	94.805	ENSHBUG00000014694	upf1	100	94.805	Haplochromis_burtoni
ENSPREG00000009940	upf1	86	94.872	ENSHBUG00000008939	upf1	95	94.872	Haplochromis_burtoni
ENSPREG00000009940	upf1	100	88.986	ENSHGLG00000010900	UPF1	100	88.986	Heterocephalus_glaber_female
ENSPREG00000009940	upf1	94	89.577	ENSHGLG00100005904	UPF1	96	89.577	Heterocephalus_glaber_male
ENSPREG00000009940	upf1	100	91.015	ENSHCOG00000008918	upf1	100	91.571	Hippocampus_comes
ENSPREG00000009940	upf1	100	92.169	ENSIPUG00000005108	UPF1	100	92.709	Ictalurus_punctatus
ENSPREG00000009940	upf1	100	89.912	ENSSTOG00000009196	UPF1	100	89.823	Ictidomys_tridecemlineatus
ENSPREG00000009940	upf1	100	88.918	ENSJJAG00000023151	Upf1	100	88.918	Jaculus_jaculus
ENSPREG00000009940	upf1	100	90.787	ENSKMAG00000004962	upf1	100	91.375	Kryptolebias_marmoratus
ENSPREG00000009940	upf1	100	92.915	ENSLBEG00000014862	upf1	100	94.260	Labrus_bergylta
ENSPREG00000009940	upf1	100	90.950	ENSLBEG00000027848	-	100	91.308	Labrus_bergylta
ENSPREG00000009940	upf1	64	91.537	ENSLACG00000008482	UPF1	100	91.537	Latimeria_chalumnae
ENSPREG00000009940	upf1	100	91.547	ENSLOCG00000002072	upf1	100	92.176	Lepisosteus_oculatus
ENSPREG00000009940	upf1	100	88.850	ENSLAFG00000014963	UPF1	100	88.850	Loxodonta_africana
ENSPREG00000009940	upf1	100	89.497	ENSMFAG00000037748	UPF1	100	89.497	Macaca_fascicularis
ENSPREG00000009940	upf1	100	89.261	ENSMMUG00000023286	UPF1	100	89.261	Macaca_mulatta
ENSPREG00000009940	upf1	100	89.497	ENSMNEG00000000046	UPF1	100	89.497	Macaca_nemestrina
ENSPREG00000009940	upf1	94	91.149	ENSMLEG00000028404	UPF1	99	91.149	Mandrillus_leucophaeus
ENSPREG00000009940	upf1	100	92.927	ENSMAMG00000006229	upf1	100	94.002	Mastacembelus_armatus
ENSPREG00000009940	upf1	100	91.203	ENSMAMG00000006231	-	100	91.577	Mastacembelus_armatus
ENSPREG00000009940	upf1	100	93.621	ENSMZEG00005003489	upf1	100	94.689	Maylandia_zebra
ENSPREG00000009940	upf1	100	91.145	ENSMZEG00005016386	-	100	91.734	Maylandia_zebra
ENSPREG00000009940	upf1	94	91.063	ENSMGAG00000004745	UPF1	100	91.063	Meleagris_gallopavo
ENSPREG00000009940	upf1	94	90.704	ENSMAUG00000011398	Upf1	95	90.704	Mesocricetus_auratus
ENSPREG00000009940	upf1	100	89.673	ENSMICG00000001659	UPF1	100	89.673	Microcebus_murinus
ENSPREG00000009940	upf1	100	88.850	ENSMOCG00000005699	Upf1	100	88.938	Microtus_ochrogaster
ENSPREG00000009940	upf1	100	93.333	ENSMMOG00000007881	upf1	100	93.423	Mola_mola
ENSPREG00000009940	upf1	95	89.005	ENSMMOG00000007537	-	99	89.479	Mola_mola
ENSPREG00000009940	upf1	100	88.811	ENSMODG00000003689	UPF1	100	88.899	Monodelphis_domestica
ENSPREG00000009940	upf1	100	92.523	ENSMALG00000000144	upf1	100	92.973	Monopterus_albus
ENSPREG00000009940	upf1	100	89.794	ENSMALG00000018100	-	100	90.242	Monopterus_albus
ENSPREG00000009940	upf1	100	89.628	MGP_CAROLIEiJ_G0031142	Upf1	100	89.628	Mus_caroli
ENSPREG00000009940	upf1	100	89.628	ENSMUSG00000058301	Upf1	100	89.628	Mus_musculus
ENSPREG00000009940	upf1	100	89.628	MGP_PahariEiJ_G0021607	Upf1	100	89.628	Mus_pahari
ENSPREG00000009940	upf1	100	89.628	MGP_SPRETEiJ_G0032260	Upf1	100	89.628	Mus_spretus
ENSPREG00000009940	upf1	100	89.823	ENSMPUG00000015516	UPF1	100	89.823	Mustela_putorius_furo
ENSPREG00000009940	upf1	99	89.698	ENSMLUG00000012122	UPF1	99	89.698	Myotis_lucifugus
ENSPREG00000009940	upf1	100	88.529	ENSNGAG00000024107	Upf1	100	88.529	Nannospalax_galili
ENSPREG00000009940	upf1	100	91.434	ENSNBRG00000000670	upf1	100	92.169	Neolamprologus_brichardi
ENSPREG00000009940	upf1	100	87.834	ENSNBRG00000022069	-	100	91.627	Neolamprologus_brichardi
ENSPREG00000009940	upf1	94	85.499	ENSNLEG00000006062	UPF1	99	85.499	Nomascus_leucogenys
ENSPREG00000009940	upf1	83	85.413	ENSMEUG00000014146	-	83	85.413	Notamacropus_eugenii
ENSPREG00000009940	upf1	94	85.837	ENSOPRG00000014018	UPF1	99	85.837	Ochotona_princeps
ENSPREG00000009940	upf1	100	89.876	ENSODEG00000012426	UPF1	100	89.964	Octodon_degus
ENSPREG00000009940	upf1	100	93.711	ENSONIG00000010452	upf1	100	94.779	Oreochromis_niloticus
ENSPREG00000009940	upf1	100	91.145	ENSONIG00000012729	-	100	91.734	Oreochromis_niloticus
ENSPREG00000009940	upf1	100	89.367	ENSOANG00000004568	UPF1	100	89.367	Ornithorhynchus_anatinus
ENSPREG00000009940	upf1	100	91.031	ENSORLG00000008453	upf1	100	91.031	Oryzias_latipes
ENSPREG00000009940	upf1	100	90.852	ENSORLG00020014758	upf1	100	90.852	Oryzias_latipes_hni
ENSPREG00000009940	upf1	100	90.852	ENSORLG00015010165	upf1	100	90.852	Oryzias_latipes_hsok
ENSPREG00000009940	upf1	100	91.211	ENSOMEG00000003665	upf1	100	91.211	Oryzias_melastigma
ENSPREG00000009940	upf1	100	89.823	ENSOGAG00000012866	UPF1	100	89.823	Otolemur_garnettii
ENSPREG00000009940	upf1	96	87.967	ENSOARG00000010739	UPF1	100	87.967	Ovis_aries
ENSPREG00000009940	upf1	94	91.149	ENSPPAG00000043884	UPF1	96	91.149	Pan_paniscus
ENSPREG00000009940	upf1	100	88.957	ENSPPRG00000023470	UPF1	100	88.957	Panthera_pardus
ENSPREG00000009940	upf1	95	90.028	ENSPTIG00000010159	UPF1	99	90.028	Panthera_tigris_altaica
ENSPREG00000009940	upf1	100	89.497	ENSPTRG00000010721	UPF1	100	89.497	Pan_troglodytes
ENSPREG00000009940	upf1	100	89.497	ENSPANG00000008847	UPF1	100	89.497	Papio_anubis
ENSPREG00000009940	upf1	91	93.657	ENSPKIG00000006069	upf1	97	93.657	Paramormyrops_kingsleyae
ENSPREG00000009940	upf1	70	90.851	ENSPSIG00000009491	UPF1	100	90.851	Pelodiscus_sinensis
ENSPREG00000009940	upf1	100	91.097	ENSPMGG00000017327	upf1	100	92.176	Periophthalmus_magnuspinnatus
ENSPREG00000009940	upf1	100	88.850	ENSPEMG00000001085	Upf1	100	88.850	Peromyscus_maniculatus_bairdii
ENSPREG00000009940	upf1	100	85.957	ENSPMAG00000001206	upf1	100	85.868	Petromyzon_marinus
ENSPREG00000009940	upf1	100	90.168	ENSPCIG00000006156	UPF1	100	90.168	Phascolarctos_cinereus
ENSPREG00000009940	upf1	100	98.197	ENSPLAG00000018155	-	100	98.197	Poecilia_latipinna
ENSPREG00000009940	upf1	100	90.925	ENSPLAG00000016232	-	100	91.285	Poecilia_latipinna
ENSPREG00000009940	upf1	100	97.385	ENSPMEG00000011443	-	100	97.385	Poecilia_mexicana
ENSPREG00000009940	upf1	100	90.844	ENSPMEG00000016319	-	100	91.203	Poecilia_mexicana
ENSPREG00000009940	upf1	100	83.874	ENSPPYG00000009752	UPF1	100	83.874	Pongo_abelii
ENSPREG00000009940	upf1	70	98.653	ENSPCAG00000012962	UPF1	69	98.653	Procavia_capensis
ENSPREG00000009940	upf1	100	89.279	ENSPCOG00000023813	UPF1	100	89.279	Propithecus_coquereli
ENSPREG00000009940	upf1	67	94.872	ENSPVAG00000003183	UPF1	69	94.872	Pteropus_vampyrus
ENSPREG00000009940	upf1	100	93.621	ENSPNYG00000003694	upf1	100	94.689	Pundamilia_nyererei
ENSPREG00000009940	upf1	100	91.285	ENSPNYG00000016731	-	100	91.734	Pundamilia_nyererei
ENSPREG00000009940	upf1	100	92.079	ENSPNAG00000025614	upf1	100	92.799	Pygocentrus_nattereri
ENSPREG00000009940	upf1	100	89.628	ENSRNOG00000020134	Upf1	100	89.628	Rattus_norvegicus
ENSPREG00000009940	upf1	94	88.889	ENSRBIG00000013894	UPF1	98	92.208	Rhinopithecus_bieti
ENSPREG00000009940	upf1	94	91.149	ENSRROG00000040935	UPF1	98	92.208	Rhinopithecus_roxellana
ENSPREG00000009940	upf1	76	55.426	YMR080C	NAM7	87	55.491	Saccharomyces_cerevisiae
ENSPREG00000009940	upf1	94	91.399	ENSSBOG00000023632	UPF1	96	91.399	Saimiri_boliviensis_boliviensis
ENSPREG00000009940	upf1	94	91.353	ENSSHAG00000010499	UPF1	100	91.353	Sarcophilus_harrisii
ENSPREG00000009940	upf1	100	91.734	ENSSFOG00015021095	upf1	100	92.183	Scleropages_formosus
ENSPREG00000009940	upf1	100	91.382	ENSSMAG00000021018	-	100	91.741	Scophthalmus_maximus
ENSPREG00000009940	upf1	100	92.466	ENSSMAG00000005055	upf1	100	93.363	Scophthalmus_maximus
ENSPREG00000009940	upf1	100	91.203	ENSSDUG00000009629	-	100	91.741	Seriola_dumerili
ENSPREG00000009940	upf1	100	93.196	ENSSDUG00000013320	upf1	100	94.270	Seriola_dumerili
ENSPREG00000009940	upf1	100	93.514	ENSSLDG00000020868	upf1	100	93.912	Seriola_lalandi_dorsalis
ENSPREG00000009940	upf1	100	91.203	ENSSLDG00000006878	-	100	91.741	Seriola_lalandi_dorsalis
ENSPREG00000009940	upf1	100	90.536	ENSSPUG00000010538	UPF1	100	90.625	Sphenodon_punctatus
ENSPREG00000009940	upf1	100	91.449	ENSSPAG00000000003	upf1	100	91.899	Stegastes_partitus
ENSPREG00000009940	upf1	100	91.382	ENSSPAG00000011521	-	100	91.644	Stegastes_partitus
ENSPREG00000009940	upf1	100	89.973	ENSSSCG00000039301	UPF1	99	92.023	Sus_scrofa
ENSPREG00000009940	upf1	82	85.851	ENSTGUG00000001057	UPF1	100	89.349	Taeniopygia_guttata
ENSPREG00000009940	upf1	100	90.656	ENSTRUG00000005131	-	100	90.925	Takifugu_rubripes
ENSPREG00000009940	upf1	100	92.876	ENSTRUG00000000150	upf1	100	93.184	Takifugu_rubripes
ENSPREG00000009940	upf1	100	86.335	ENSTTRG00000011544	UPF1	100	86.335	Tursiops_truncatus
ENSPREG00000009940	upf1	100	89.823	ENSUAMG00000007093	UPF1	100	89.823	Ursus_americanus
ENSPREG00000009940	upf1	95	92.118	ENSUMAG00000006652	UPF1	99	92.821	Ursus_maritimus
ENSPREG00000009940	upf1	100	89.823	ENSVVUG00000007797	UPF1	100	89.823	Vulpes_vulpes
ENSPREG00000009940	upf1	100	77.467	ENSXETG00000013602	upf1	100	76.977	Xenopus_tropicalis
ENSPREG00000009940	upf1	97	95.247	ENSXCOG00000015275	-	96	95.247	Xiphophorus_couchianus
ENSPREG00000009940	upf1	94	91.739	ENSXCOG00000005764	-	99	92.123	Xiphophorus_couchianus
ENSPREG00000009940	upf1	100	90.754	ENSXMAG00000002540	-	100	91.113	Xiphophorus_maculatus
ENSPREG00000009940	upf1	100	95.491	ENSXMAG00000001703	-	100	95.491	Xiphophorus_maculatus