EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPREG00000010066 (Gene tree)
Gene ID: 103475598
Gene Symbol: smg6
Alias: si:dkey-16f21.2
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Minus strand
Length: 15512 bases
Position: chrLG14:4470949-4486460
Accession: 103475598
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000014902	EST1	PF10374.9	4.7e-12	1	1
ENSPREP00000014902	EST1_DNA_bind	PF10373.9	1.1e-56	1	1
ENSPREP00000014902	PIN_4	PF13638.6	5.8e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000015056	-	8932	XM_008427375	ENSPREP00000014902	1607 (aa)	XP_008425597	UPI0004A47596

Gene Model

Click here to download ENSPREG00000010066's gene model file

Pathways

Pathway ID	Pathway Name	Source
pret03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000010066's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000010066	smg6	74	53.997	ENSG00000070366	SMG6	100	57.299	Homo_sapiens
ENSPREG00000010066	smg6	100	72.031	ENSAPOG00000019448	smg6	100	72.771	Acanthochromis_polyacanthus
ENSPREG00000010066	smg6	74	54.003	ENSAMEG00000007632	SMG6	83	54.046	Ailuropoda_melanoleuca
ENSPREG00000010066	smg6	93	69.721	ENSACIG00000012997	smg6	100	70.000	Amphilophus_citrinellus
ENSPREG00000010066	smg6	100	72.848	ENSAOCG00000002630	smg6	100	73.466	Amphiprion_ocellaris
ENSPREG00000010066	smg6	100	72.634	ENSAPEG00000019101	smg6	100	73.253	Amphiprion_percula
ENSPREG00000010066	smg6	100	69.780	ENSATEG00000006483	smg6	100	70.220	Anabas_testudineus
ENSPREG00000010066	smg6	62	49.664	ENSACAG00000011783	SMG6	72	53.607	Anolis_carolinensis
ENSPREG00000010066	smg6	74	54.183	ENSANAG00000035760	SMG6	83	54.275	Aotus_nancymaae
ENSPREG00000010066	smg6	100	69.635	ENSACLG00000005288	smg6	100	70.895	Astatotilapia_calliptera
ENSPREG00000010066	smg6	82	66.884	ENSAMXG00000017326	smg6	88	66.698	Astyanax_mexicanus
ENSPREG00000010066	smg6	74	54.324	ENSBTAG00000000267	SMG6	83	54.438	Bos_taurus
ENSPREG00000010066	smg6	74	54.510	ENSCJAG00000001820	SMG6	83	54.474	Callithrix_jacchus
ENSPREG00000010066	smg6	74	54.239	ENSCAFG00000019260	SMG6	83	54.281	Canis_familiaris
ENSPREG00000010066	smg6	74	54.239	ENSCAFG00020009770	SMG6	83	54.281	Canis_lupus_dingo
ENSPREG00000010066	smg6	74	54.438	ENSCHIG00000021998	SMG6	83	54.003	Capra_hircus
ENSPREG00000010066	smg6	74	53.479	ENSTSYG00000003406	SMG6	100	56.752	Carlito_syrichta
ENSPREG00000010066	smg6	74	45.316	ENSCAPG00000016197	SMG6	68	53.592	Cavia_aperea
ENSPREG00000010066	smg6	74	53.249	ENSCPOG00000014878	SMG6	83	61.058	Cavia_porcellus
ENSPREG00000010066	smg6	74	53.997	ENSCCAG00000035801	SMG6	83	54.118	Cebus_capucinus
ENSPREG00000010066	smg6	74	54.474	ENSCATG00000031956	SMG6	83	54.553	Cercocebus_atys
ENSPREG00000010066	smg6	74	52.923	ENSCLAG00000006748	SMG6	82	60.096	Chinchilla_lanigera
ENSPREG00000010066	smg6	74	54.710	ENSCSAG00000013800	SMG6	83	54.788	Chlorocebus_sabaeus
ENSPREG00000010066	smg6	87	54.632	ENSCPBG00000020369	SMG6	98	54.102	Chrysemys_picta_bellii
ENSPREG00000010066	smg6	74	54.396	ENSCANG00000031764	SMG6	100	57.664	Colobus_angolensis_palliatus
ENSPREG00000010066	smg6	74	49.565	ENSCGRG00000007782	Smg6	84	50.000	Cricetulus_griseus_crigri
ENSPREG00000010066	smg6	100	65.123	ENSCSEG00000012757	smg6	100	64.886	Cynoglossus_semilaevis
ENSPREG00000010066	smg6	100	82.883	ENSCVAG00000012789	smg6	100	83.067	Cyprinodon_variegatus
ENSPREG00000010066	smg6	100	57.065	ENSDARG00000100481	smg6	100	56.416	Danio_rerio
ENSPREG00000010066	smg6	74	53.689	ENSDNOG00000048283	SMG6	83	53.804	Dasypus_novemcinctus
ENSPREG00000010066	smg6	74	50.665	ENSDORG00000016614	Smg6	87	57.919	Dipodomys_ordii
ENSPREG00000010066	smg6	83	87.500	ENSETEG00000016790	SMG6	70	87.500	Echinops_telfairi
ENSPREG00000010066	smg6	60	47.578	ENSEBUG00000005059	smg6	63	47.805	Eptatretus_burgeri
ENSPREG00000010066	smg6	74	54.058	ENSEASG00005009318	SMG6	83	54.216	Equus_asinus_asinus
ENSPREG00000010066	smg6	74	54.058	ENSECAG00000006519	SMG6	83	54.216	Equus_caballus
ENSPREG00000010066	smg6	74	46.499	ENSEEUG00000003493	SMG6	84	46.378	Erinaceus_europaeus
ENSPREG00000010066	smg6	78	71.587	ENSELUG00000005934	smg6	81	68.272	Esox_lucius
ENSPREG00000010066	smg6	74	54.046	ENSFCAG00000028817	SMG6	83	54.281	Felis_catus
ENSPREG00000010066	smg6	83	51.108	ENSFALG00000006538	SMG6	88	53.405	Ficedula_albicollis
ENSPREG00000010066	smg6	74	53.271	ENSFDAG00000015106	SMG6	82	59.615	Fukomys_damarensis
ENSPREG00000010066	smg6	100	85.547	ENSFHEG00000013282	smg6	100	85.732	Fundulus_heteroclitus
ENSPREG00000010066	smg6	77	52.910	ENSGALG00000003108	SMG6	84	53.139	Gallus_gallus
ENSPREG00000010066	smg6	100	93.831	ENSGAFG00000000379	smg6	100	93.831	Gambusia_affinis
ENSPREG00000010066	smg6	88	72.443	ENSGACG00000020521	smg6	99	71.646	Gasterosteus_aculeatus
ENSPREG00000010066	smg6	74	53.773	ENSGAGG00000025617	SMG6	84	54.140	Gopherus_agassizii
ENSPREG00000010066	smg6	74	54.154	ENSGGOG00000017156	SMG6	83	54.317	Gorilla_gorilla
ENSPREG00000010066	smg6	100	70.048	ENSHBUG00000021311	smg6	100	70.504	Haplochromis_burtoni
ENSPREG00000010066	smg6	74	54.075	ENSHGLG00000012882	SMG6	89	57.522	Heterocephalus_glaber_female
ENSPREG00000010066	smg6	74	54.075	ENSHGLG00100017815	SMG6	89	57.522	Heterocephalus_glaber_male
ENSPREG00000010066	smg6	66	68.582	ENSHCOG00000008761	smg6	83	67.778	Hippocampus_comes
ENSPREG00000010066	smg6	100	54.236	ENSIPUG00000012493	smg6	100	53.603	Ictalurus_punctatus
ENSPREG00000010066	smg6	74	54.459	ENSSTOG00000028127	SMG6	83	59.615	Ictidomys_tridecemlineatus
ENSPREG00000010066	smg6	54	50.899	ENSJJAG00000015367	Smg6	76	49.496	Jaculus_jaculus
ENSPREG00000010066	smg6	100	74.894	ENSKMAG00000000279	smg6	100	75.090	Kryptolebias_marmoratus
ENSPREG00000010066	smg6	100	69.194	ENSLBEG00000002184	smg6	100	69.332	Labrus_bergylta
ENSPREG00000010066	smg6	74	53.260	ENSLAFG00000001261	SMG6	83	53.647	Loxodonta_africana
ENSPREG00000010066	smg6	74	54.710	ENSMFAG00000003394	SMG6	83	54.788	Macaca_fascicularis
ENSPREG00000010066	smg6	74	54.631	ENSMMUG00000023161	SMG6	83	54.710	Macaca_mulatta
ENSPREG00000010066	smg6	74	52.400	ENSMNEG00000044592	SMG6	83	52.557	Macaca_nemestrina
ENSPREG00000010066	smg6	86	58.916	ENSMLEG00000029353	SMG6	84	58.916	Mandrillus_leucophaeus
ENSPREG00000010066	smg6	100	69.701	ENSMAMG00000020119	smg6	100	71.014	Mastacembelus_armatus
ENSPREG00000010066	smg6	100	69.516	ENSMZEG00005024736	smg6	100	69.910	Maylandia_zebra
ENSPREG00000010066	smg6	53	50.056	ENSMGAG00000005401	-	81	50.664	Meleagris_gallopavo
ENSPREG00000010066	smg6	74	54.039	ENSMICG00000012913	SMG6	83	54.082	Microcebus_murinus
ENSPREG00000010066	smg6	100	63.882	ENSMMOG00000010883	smg6	100	64.166	Mola_mola
ENSPREG00000010066	smg6	86	54.660	ENSMODG00000010622	SMG6	84	59.107	Monodelphis_domestica
ENSPREG00000010066	smg6	100	67.542	ENSMALG00000001106	smg6	100	68.534	Monopterus_albus
ENSPREG00000010066	smg6	74	53.538	MGP_CAROLIEiJ_G0016729	Smg6	87	69.206	Mus_caroli
ENSPREG00000010066	smg6	74	53.485	ENSMUSG00000038290	Smg6	87	69.206	Mus_musculus
ENSPREG00000010066	smg6	86	53.417	MGP_PahariEiJ_G0017866	Smg6	87	68.889	Mus_pahari
ENSPREG00000010066	smg6	74	53.406	MGP_SPRETEiJ_G0017572	Smg6	87	68.889	Mus_spretus
ENSPREG00000010066	smg6	74	54.346	ENSMPUG00000013046	SMG6	83	54.310	Mustela_putorius_furo
ENSPREG00000010066	smg6	74	54.394	ENSMLUG00000005739	SMG6	83	54.358	Myotis_lucifugus
ENSPREG00000010066	smg6	74	53.591	ENSNGAG00000007287	Smg6	89	55.947	Nannospalax_galili
ENSPREG00000010066	smg6	97	67.983	ENSNBRG00000009511	smg6	99	69.815	Neolamprologus_brichardi
ENSPREG00000010066	smg6	74	54.396	ENSNLEG00000017171	SMG6	100	57.299	Nomascus_leucogenys
ENSPREG00000010066	smg6	74	54.301	ENSMEUG00000015804	SMG6	78	55.735	Notamacropus_eugenii
ENSPREG00000010066	smg6	52	62.304	ENSOPRG00000000579	SMG6	79	62.304	Ochotona_princeps
ENSPREG00000010066	smg6	74	48.000	ENSODEG00000008038	SMG6	81	54.070	Octodon_degus
ENSPREG00000010066	smg6	100	69.934	ENSONIG00000005594	smg6	100	75.956	Oreochromis_niloticus
ENSPREG00000010066	smg6	74	53.798	ENSOCUG00000013018	SMG6	83	53.586	Oryctolagus_cuniculus
ENSPREG00000010066	smg6	100	66.807	ENSORLG00000003317	smg6	100	67.288	Oryzias_latipes
ENSPREG00000010066	smg6	100	66.407	ENSORLG00020015343	smg6	100	67.047	Oryzias_latipes_hni
ENSPREG00000010066	smg6	100	67.208	ENSORLG00015020454	smg6	100	67.709	Oryzias_latipes_hsok
ENSPREG00000010066	smg6	100	67.590	ENSOMEG00000010838	smg6	100	67.647	Oryzias_melastigma
ENSPREG00000010066	smg6	74	54.154	ENSOGAG00000004483	SMG6	83	54.196	Otolemur_garnettii
ENSPREG00000010066	smg6	74	54.524	ENSOARG00000015076	SMG6	85	54.360	Ovis_aries
ENSPREG00000010066	smg6	74	54.190	ENSPPAG00000043296	SMG6	83	54.118	Pan_paniscus
ENSPREG00000010066	smg6	74	54.046	ENSPPRG00000014581	SMG6	83	54.281	Panthera_pardus
ENSPREG00000010066	smg6	74	54.046	ENSPTIG00000008925	SMG6	100	57.482	Panthera_tigris_altaica
ENSPREG00000010066	smg6	74	54.111	ENSPTRG00000008544	SMG6	100	57.299	Pan_troglodytes
ENSPREG00000010066	smg6	74	54.631	ENSPANG00000024588	SMG6	83	54.710	Papio_anubis
ENSPREG00000010066	smg6	68	52.344	ENSPSIG00000006660	SMG6	82	52.129	Pelodiscus_sinensis
ENSPREG00000010066	smg6	94	78.261	ENSPMGG00000000844	smg6	99	77.717	Periophthalmus_magnuspinnatus
ENSPREG00000010066	smg6	74	54.082	ENSPEMG00000020707	Smg6	91	57.333	Peromyscus_maniculatus_bairdii
ENSPREG00000010066	smg6	100	96.644	ENSPFOG00000012035	smg6	100	96.644	Poecilia_formosa
ENSPREG00000010066	smg6	100	96.582	ENSPLAG00000017660	smg6	100	96.582	Poecilia_latipinna
ENSPREG00000010066	smg6	100	96.768	ENSPMEG00000000258	smg6	100	96.768	Poecilia_mexicana
ENSPREG00000010066	smg6	74	50.428	ENSPPYG00000007790	SMG6	83	50.584	Pongo_abelii
ENSPREG00000010066	smg6	71	58.957	ENSPCAG00000000552	SMG6	83	51.260	Procavia_capensis
ENSPREG00000010066	smg6	85	53.961	ENSPCOG00000020925	SMG6	94	53.961	Propithecus_coquereli
ENSPREG00000010066	smg6	71	61.588	ENSPVAG00000002159	SMG6	75	61.686	Pteropus_vampyrus
ENSPREG00000010066	smg6	93	66.881	ENSPNYG00000024151	smg6	99	69.617	Pundamilia_nyererei
ENSPREG00000010066	smg6	88	60.144	ENSPNAG00000015480	smg6	100	51.660	Pygocentrus_nattereri
ENSPREG00000010066	smg6	74	53.768	ENSRNOG00000003041	Smg6	87	69.841	Rattus_norvegicus
ENSPREG00000010066	smg6	74	54.631	ENSRBIG00000024746	SMG6	83	54.710	Rhinopithecus_bieti
ENSPREG00000010066	smg6	74	54.631	ENSRROG00000030423	SMG6	100	57.664	Rhinopithecus_roxellana
ENSPREG00000010066	smg6	74	54.510	ENSSBOG00000022518	SMG6	83	52.904	Saimiri_boliviensis_boliviensis
ENSPREG00000010066	smg6	74	54.681	ENSSHAG00000010045	SMG6	76	56.308	Sarcophilus_harrisii
ENSPREG00000010066	smg6	94	55.058	ENSSFOG00015005436	smg6	92	55.157	Scleropages_formosus
ENSPREG00000010066	smg6	100	69.547	ENSSMAG00000019777	smg6	100	69.547	Scophthalmus_maximus
ENSPREG00000010066	smg6	100	72.510	ENSSDUG00000016412	smg6	100	72.928	Seriola_dumerili
ENSPREG00000010066	smg6	90	72.852	ENSSLDG00000020747	smg6	98	73.180	Seriola_lalandi_dorsalis
ENSPREG00000010066	smg6	74	54.444	ENSSPUG00000007152	SMG6	83	54.444	Sphenodon_punctatus
ENSPREG00000010066	smg6	100	72.530	ENSSPAG00000015633	smg6	100	73.149	Stegastes_partitus
ENSPREG00000010066	smg6	74	54.317	ENSSSCG00000017826	SMG6	83	54.360	Sus_scrofa
ENSPREG00000010066	smg6	83	50.851	ENSTGUG00000005836	SMG6	88	52.691	Taeniopygia_guttata
ENSPREG00000010066	smg6	92	65.494	ENSTRUG00000000358	smg6	98	64.568	Takifugu_rubripes
ENSPREG00000010066	smg6	95	72.324	ENSTNIG00000016164	smg6	100	71.254	Tetraodon_nigroviridis
ENSPREG00000010066	smg6	74	51.417	ENSTBEG00000011424	SMG6	72	55.352	Tupaia_belangeri
ENSPREG00000010066	smg6	66	55.256	ENSTTRG00000001175	SMG6	74	55.256	Tursiops_truncatus
ENSPREG00000010066	smg6	74	54.069	ENSUAMG00000025152	SMG6	85	54.232	Ursus_americanus
ENSPREG00000010066	smg6	74	54.160	ENSUMAG00000009306	SMG6	85	54.203	Ursus_maritimus
ENSPREG00000010066	smg6	60	95.833	ENSVPAG00000000225	SMG6	69	95.833	Vicugna_pacos
ENSPREG00000010066	smg6	74	54.831	ENSVVUG00000021727	SMG6	84	54.948	Vulpes_vulpes
ENSPREG00000010066	smg6	66	54.579	ENSXETG00000023799	SMG6	75	53.860	Xenopus_tropicalis
ENSPREG00000010066	smg6	98	90.371	ENSXCOG00000009867	smg6	99	90.875	Xiphophorus_couchianus
ENSPREG00000010066	smg6	100	94.379	ENSXMAG00000010321	smg6	100	94.379	Xiphophorus_maculatus