EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSPREG00000010119 (Gene tree)
Gene ID
103475593
Gene Symbol
RPA1 (1 of many)
Alias
HSSB|REPA1|RF-A|RP-A|RPA70
Full Name
replication protein A 70 kDa DNA-binding subunit-like
Gene Type
protein_coding
Species
Poecilia_reticulata
Status
putative
Strand
Minus strand
Length
47648 bases
Position
chrLG14:4669633-4717280
Accession
103475593
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSPREP00000014985tRNA_anti-codonPF01336.259.6e-1311
ENSPREP00000014993tRNA_anti-codonPF01336.259.7e-1311
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSPRET00000015140RPA1 (1 of many)-2011929-ENSPREP00000014985642 (aa)--
ENSPRET00000015149RPA1 (1 of many)-2023194XM_008427369ENSPREP00000014993674 (aa)XP_008425591UPI0004A3F14E
Gene Model
Click here to download ENSPREG00000010119's gene model file
Pathways
Pathway IDPathway NameSource
pret03030DNA replicationKEGG
pret03420Nucleotide excision repairKEGG
pret03430Mismatch repairKEGG
pret03440Homologous recombinationKEGG
pret03460Fanconi anemia pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000010119's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSPREG00000010119RPA18162.871ENSPREG00000010174rpa19161.190
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSPREG00000010119RPA18271.396ENSAPOG00000011658rpa19371.396Acanthochromis_polyacanthus
ENSPREG00000010119RPA110075.076ENSAPOG00000019409RPA19975.469Acanthochromis_polyacanthus
ENSPREG00000010119RPA19753.120ENSAMEG00000007706RPA19653.120Ailuropoda_melanoleuca
ENSPREG00000010119RPA17861.416ENSACIG00000007277rpa19261.416Amphilophus_citrinellus
ENSPREG00000010119RPA19671.803ENSACIG00000012881RPA19971.803Amphilophus_citrinellus
ENSPREG00000010119RPA19956.781ENSAOCG00000023376rpa19371.625Amphiprion_ocellaris
ENSPREG00000010119RPA110073.313ENSAOCG00000009003RPA19973.939Amphiprion_ocellaris
ENSPREG00000010119RPA18472.167ENSAPEG00000008634rpa19371.854Amphiprion_percula
ENSPREG00000010119RPA110075.460ENSAPEG00000019132RPA19975.988Amphiprion_percula
ENSPREG00000010119RPA17770.455ENSATEG00000022024rpa19270.455Anabas_testudineus
ENSPREG00000010119RPA110072.393ENSATEG00000006443RPA19972.182Anabas_testudineus
ENSPREG00000010119RPA18264.400ENSAPLG00000012442RPA18564.400Anas_platyrhynchos
ENSPREG00000010119RPA18458.102ENSACAG00000014490RPA19757.543Anolis_carolinensis
ENSPREG00000010119RPA19753.963ENSANAG00000023456RPA19762.609Aotus_nancymaae
ENSPREG00000010119RPA17772.082ENSACLG00000006640rpa19372.082Astatotilapia_calliptera
ENSPREG00000010119RPA110072.794ENSACLG00000005223RPA110072.794Astatotilapia_calliptera
ENSPREG00000010119RPA18370.880ENSAMXG00000008418rpa19770.880Astyanax_mexicanus
ENSPREG00000010119RPA110052.322ENSBTAG00000009711RPA19952.733Bos_taurus
ENSPREG00000010119RPA110050.929ENSCJAG00000001848RPA19952.430Callithrix_jacchus
ENSPREG00000010119RPA110051.858ENSCAFG00000019249RPA19952.585Canis_familiaris
ENSPREG00000010119RPA110051.858ENSCAFG00020009847RPA19952.585Canis_lupus_dingo
ENSPREG00000010119RPA18263.781ENSCHIG00000026308RPA19952.577Capra_hircus
ENSPREG00000010119RPA18263.659ENSTSYG00000003482-9163.492Carlito_syrichta
ENSPREG00000010119RPA110052.006ENSCPOG00000000035RPA19952.725Cavia_porcellus
ENSPREG00000010119RPA110042.989ENSCCAG00000010981RPA19944.721Cebus_capucinus
ENSPREG00000010119RPA110052.632ENSCLAG00000005185-9953.176Chinchilla_lanigera
ENSPREG00000010119RPA110049.147ENSCLAG00000015045-9949.556Chinchilla_lanigera
ENSPREG00000010119RPA18350.444ENSCSAG00000013833RPA19944.640Chlorocebus_sabaeus
ENSPREG00000010119RPA19652.308ENSCHOG00000013540-9952.308Choloepus_hoffmanni
ENSPREG00000010119RPA16464.220ENSCHOG00000009454-9964.220Choloepus_hoffmanni
ENSPREG00000010119RPA110052.713ENSCPBG00000020377RPA19953.797Chrysemys_picta_bellii
ENSPREG00000010119RPA19348.046ENSCING00000023482-9947.527Ciona_intestinalis
ENSPREG00000010119RPA18663.702ENSCANG00000030911RPA19763.535Colobus_angolensis_palliatus
ENSPREG00000010119RPA110052.315ENSCGRG00001008197Rpa19952.437Cricetulus_griseus_chok1gshd
ENSPREG00000010119RPA17060.334ENSCGRG00000000582Rpa19460.334Cricetulus_griseus_crigri
ENSPREG00000010119RPA19963.001ENSCSEG00000012726RPA19963.492Cynoglossus_semilaevis
ENSPREG00000010119RPA19169.108ENSCSEG00000013066rpa19369.108Cynoglossus_semilaevis
ENSPREG00000010119RPA19982.508ENSCVAG00000013446-9681.832Cyprinodon_variegatus
ENSPREG00000010119RPA18368.904ENSCVAG00000019431rpa19568.904Cyprinodon_variegatus
ENSPREG00000010119RPA18970.880ENSDARG00000003938rpa19370.880Danio_rerio
ENSPREG00000010119RPA19459.426ENSDNOG00000017218RPA19759.426Dasypus_novemcinctus
ENSPREG00000010119RPA110052.778ENSDORG00000006199Rpa19953.323Dipodomys_ordii
ENSPREG00000010119RPA18344.111FBgn0010173RpA-709144.111Drosophila_melanogaster
ENSPREG00000010119RPA18563.918ENSETEG00000017608RPA18263.918Echinops_telfairi
ENSPREG00000010119RPA19261.331ENSEASG00005009372RPA19564.465Equus_asinus_asinus
ENSPREG00000010119RPA110052.241ENSECAG00000023886RPA19952.950Equus_caballus
ENSPREG00000010119RPA16264.115ENSEEUG00000002186-6864.115Erinaceus_europaeus
ENSPREG00000010119RPA16271.942ENSELUG00000006136RPA18371.942Esox_lucius
ENSPREG00000010119RPA110056.366ENSELUG00000021071rpa19956.296Esox_lucius
ENSPREG00000010119RPA110051.858ENSFCAG00000006306RPA19263.982Felis_catus
ENSPREG00000010119RPA110051.105ENSFALG00000006575RPA19951.105Ficedula_albicollis
ENSPREG00000010119RPA19959.443ENSFDAG00000007720RPA110059.443Fukomys_damarensis
ENSPREG00000010119RPA19955.804ENSFHEG00000003580rpa19169.178Fundulus_heteroclitus
ENSPREG00000010119RPA18369.794ENSGMOG00000010382rpa19769.794Gadus_morhua
ENSPREG00000010119RPA110051.393ENSGALG00000003072RPA19951.327Gallus_gallus
ENSPREG00000010119RPA110091.111ENSGAFG00000020953RPA110091.556Gambusia_affinis
ENSPREG00000010119RPA18169.877ENSGAFG00000012916rpa19469.495Gambusia_affinis
ENSPREG00000010119RPA19270.682ENSGACG00000010856rpa19471.395Gasterosteus_aculeatus
ENSPREG00000010119RPA110052.403ENSGAGG00000013611RPA19952.959Gopherus_agassizii
ENSPREG00000010119RPA18764.390ENSGGOG00000014186RPA19764.172Gorilla_gorilla
ENSPREG00000010119RPA18271.854ENSHBUG00000017773rpa19271.854Haplochromis_burtoni
ENSPREG00000010119RPA17972.043ENSHBUG00000009348RPA19372.043Haplochromis_burtoni
ENSPREG00000010119RPA19265.525ENSHGLG00000008846RPA110053.619Heterocephalus_glaber_female
ENSPREG00000010119RPA19265.525ENSHGLG00100017755-10053.619Heterocephalus_glaber_male
ENSPREG00000010119RPA19956.175ENSHGLG00100000799-9949.485Heterocephalus_glaber_male
ENSPREG00000010119RPA19259.296ENSHGLG00100002005-9944.822Heterocephalus_glaber_male
ENSPREG00000010119RPA18855.305ENSHCOG00000000351RPA19956.440Hippocampus_comes
ENSPREG00000010119RPA18266.970ENSHCOG00000001401rpa19955.224Hippocampus_comes
ENSPREG00000010119RPA110056.454ENSIPUG00000004400rpa19970.938Ictalurus_punctatus
ENSPREG00000010119RPA19252.782ENSSTOG00000022475RPA19452.782Ictidomys_tridecemlineatus
ENSPREG00000010119RPA19654.531ENSJJAG00000000876Rpa19854.531Jaculus_jaculus
ENSPREG00000010119RPA18169.951ENSKMAG00000005605rpa19069.565Kryptolebias_marmoratus
ENSPREG00000010119RPA110069.630ENSKMAG00000000234RPA110070.414Kryptolebias_marmoratus
ENSPREG00000010119RPA110070.370ENSLBEG00000002281RPA19970.963Labrus_bergylta
ENSPREG00000010119RPA19955.952ENSLBEG00000021604rpa19669.388Labrus_bergylta
ENSPREG00000010119RPA17155.852ENSLACG00000007210RPA19855.852Latimeria_chalumnae
ENSPREG00000010119RPA110056.522ENSLOCG00000006397rpa19956.889Lepisosteus_oculatus
ENSPREG00000010119RPA110050.075ENSLAFG00000015354RPA19950.431Loxodonta_africana
ENSPREG00000010119RPA16964.000ENSMFAG00000036138-9857.740Macaca_fascicularis
ENSPREG00000010119RPA19855.268ENSMMUG00000002442-9955.268Macaca_mulatta
ENSPREG00000010119RPA18063.462ENSMMUG00000011604-9853.272Macaca_mulatta
ENSPREG00000010119RPA18062.864ENSMNEG00000031632-9853.067Macaca_nemestrina
ENSPREG00000010119RPA18256.701ENSMNEG00000029837-9956.701Macaca_nemestrina
ENSPREG00000010119RPA18060.850ENSMLEG00000038768-9850.381Mandrillus_leucophaeus
ENSPREG00000010119RPA19170.252ENSMAMG00000017993rpa19670.252Mastacembelus_armatus
ENSPREG00000010119RPA110075.730ENSMAMG00000020097RPA19976.393Mastacembelus_armatus
ENSPREG00000010119RPA18271.854ENSMZEG00005007551rpa19271.854Maylandia_zebra
ENSPREG00000010119RPA110072.794ENSMZEG00005024731RPA110072.794Maylandia_zebra
ENSPREG00000010119RPA19951.487ENSMGAG00000005315RPA19851.267Meleagris_gallopavo
ENSPREG00000010119RPA18461.489ENSMAUG00000010474Rpa19853.354Mesocricetus_auratus
ENSPREG00000010119RPA110052.396ENSMICG00000012867RPA19952.811Microcebus_murinus
ENSPREG00000010119RPA110051.698ENSMOCG00000013019Rpa19951.846Microtus_ochrogaster
ENSPREG00000010119RPA18764.898ENSMMOG00000014292rpa19964.898Mola_mola
ENSPREG00000010119RPA19966.466ENSMMOG00000010868RPA19878.458Mola_mola
ENSPREG00000010119RPA110052.859ENSMODG00000010549RPA19953.097Monodelphis_domestica
ENSPREG00000010119RPA18970.560ENSMALG00000011453rpa19370.455Monopterus_albus
ENSPREG00000010119RPA110068.950ENSMALG00000001208RPA19969.547Monopterus_albus
ENSPREG00000010119RPA110051.698MGP_CAROLIEiJ_G0016734Rpa19952.437Mus_caroli
ENSPREG00000010119RPA110051.389ENSMUSG00000000751Rpa19952.437Mus_musculus
ENSPREG00000010119RPA110052.006MGP_PahariEiJ_G0017871Rpa19953.333Mus_pahari
ENSPREG00000010119RPA110051.698MGP_SPRETEiJ_G0017577Rpa19952.437Mus_spretus
ENSPREG00000010119RPA18964.237ENSMPUG00000013119RPA19164.237Mustela_putorius_furo
ENSPREG00000010119RPA110051.529ENSMLUG00000006113RPA19951.971Myotis_lucifugus
ENSPREG00000010119RPA19653.692ENSNGAG00000004522Rpa19453.538Nannospalax_galili
ENSPREG00000010119RPA17771.625ENSNBRG00000020595rpa19271.625Neolamprologus_brichardi
ENSPREG00000010119RPA19965.723ENSNBRG00000009672RPA19766.269Neolamprologus_brichardi
ENSPREG00000010119RPA110052.322ENSNLEG00000017149RPA19952.733Nomascus_leucogenys
ENSPREG00000010119RPA18861.538ENSMEUG00000006714RPA18861.458Notamacropus_eugenii
ENSPREG00000010119RPA19653.917ENSODEG00000009038RPA19653.917Octodon_degus
ENSPREG00000010119RPA19957.675ENSONIG00000013135rpa19958.271Oreochromis_niloticus
ENSPREG00000010119RPA19853.474ENSOANG00000010880RPA19953.625Ornithorhynchus_anatinus
ENSPREG00000010119RPA110049.925ENSOCUG00000001504RPA19950.430Oryctolagus_cuniculus
ENSPREG00000010119RPA19371.566ENSORLG00000004856rpa19570.852Oryzias_latipes
ENSPREG00000010119RPA110072.291ENSORLG00000003368RPA19972.526Oryzias_latipes
ENSPREG00000010119RPA19371.807ENSORLG00020008980rpa19571.076Oryzias_latipes_hni
ENSPREG00000010119RPA110072.994ENSORLG00020015284RPA19973.196Oryzias_latipes_hni
ENSPREG00000010119RPA19371.807ENSORLG00015013982rpa19571.076Oryzias_latipes_hsok
ENSPREG00000010119RPA19972.781ENSORLG00015020383RPA19971.852Oryzias_latipes_hsok
ENSPREG00000010119RPA16782.719ENSORLG00015005867-9982.719Oryzias_latipes_hsok
ENSPREG00000010119RPA19170.197ENSOMEG00000004704rpa19468.879Oryzias_melastigma
ENSPREG00000010119RPA110069.410ENSOMEG00000011040RPA19869.172Oryzias_melastigma
ENSPREG00000010119RPA17866.854ENSOGAG00000029379-9866.854Otolemur_garnettii
ENSPREG00000010119RPA110052.623ENSOGAG00000005581-9953.166Otolemur_garnettii
ENSPREG00000010119RPA18263.781ENSOARG00000014479RPA19952.577Ovis_aries
ENSPREG00000010119RPA19661.571ENSPPAG00000039680RPA19958.893Pan_paniscus
ENSPREG00000010119RPA110051.858ENSPPRG00000011807RPA19264.430Panthera_pardus
ENSPREG00000010119RPA110051.548ENSPTIG00000007898RPA19263.982Panthera_tigris_altaica
ENSPREG00000010119RPA110052.477ENSPTRG00000008539RPA19952.733Pan_troglodytes
ENSPREG00000010119RPA18363.462ENSPANG00000024592RPA19952.655Papio_anubis
ENSPREG00000010119RPA18171.744ENSPKIG00000008053rpa19167.882Paramormyrops_kingsleyae
ENSPREG00000010119RPA19753.517ENSPSIG00000015617RPA19852.905Pelodiscus_sinensis
ENSPREG00000010119RPA19575.917ENSPMGG00000000543RPA19975.375Periophthalmus_magnuspinnatus
ENSPREG00000010119RPA18371.429ENSPMGG00000011589rpa19671.429Periophthalmus_magnuspinnatus
ENSPREG00000010119RPA110052.315ENSPEMG00000021061Rpa19952.290Peromyscus_maniculatus_bairdii
ENSPREG00000010119RPA18265.455ENSPCIG00000019049RPA19951.994Phascolarctos_cinereus
ENSPREG00000010119RPA19956.101ENSPFOG00000003987rpa19269.037Poecilia_formosa
ENSPREG00000010119RPA19956.994ENSPLAG00000004984rpa19956.845Poecilia_latipinna
ENSPREG00000010119RPA19992.056ENSPLAG00000008844-9792.056Poecilia_latipinna
ENSPREG00000010119RPA19992.212ENSPMEG00000003627-9792.368Poecilia_mexicana
ENSPREG00000010119RPA19956.101ENSPMEG00000020602rpa19269.037Poecilia_mexicana
ENSPREG00000010119RPA110052.012ENSPCOG00000001799RPA19952.593Propithecus_coquereli
ENSPREG00000010119RPA110051.238ENSPVAG00000002149RPA19951.846Pteropus_vampyrus
ENSPREG00000010119RPA110072.941ENSPNYG00000024165RPA110072.941Pundamilia_nyererei
ENSPREG00000010119RPA18272.082ENSPNYG00000016316rpa19272.082Pundamilia_nyererei
ENSPREG00000010119RPA18559.827ENSPNAG00000008599rpa19657.526Pygocentrus_nattereri
ENSPREG00000010119RPA19761.165ENSRNOG00000003123Rpa19952.353Rattus_norvegicus
ENSPREG00000010119RPA19858.135ENSRBIG00000036587RPA19952.507Rhinopithecus_bieti
ENSPREG00000010119RPA19854.167ENSRROG00000043278RPA19949.558Rhinopithecus_roxellana
ENSPREG00000010119RPA16735.332YAR007CRFA17535.332Saccharomyces_cerevisiae
ENSPREG00000010119RPA19252.894ENSSBOG00000030233RPA19753.846Saimiri_boliviensis_boliviensis
ENSPREG00000010119RPA18562.213ENSSHAG00000007969RPA19654.186Sarcophilus_harrisii
ENSPREG00000010119RPA18971.951ENSSFOG00015005362rpa18671.719Scleropages_formosus
ENSPREG00000010119RPA110072.197ENSSMAG00000019746RPA19973.060Scophthalmus_maximus
ENSPREG00000010119RPA18471.106ENSSDUG00000011949rpa19571.106Seriola_dumerili
ENSPREG00000010119RPA110075.920ENSSDUG00000016358RPA19977.160Seriola_dumerili
ENSPREG00000010119RPA18570.874ENSSLDG00000011806rpa19370.655Seriola_lalandi_dorsalis
ENSPREG00000010119RPA110075.957ENSSLDG00000020784RPA19976.901Seriola_lalandi_dorsalis
ENSPREG00000010119RPA18765.625ENSSARG00000007506RPA17358.309Sorex_araneus
ENSPREG00000010119RPA19750.610ENSSPUG00000007223RPA19856.164Sphenodon_punctatus
ENSPREG00000010119RPA18570.455ENSSPAG00000009903rpa19370.455Stegastes_partitus
ENSPREG00000010119RPA19968.139ENSSPAG00000011165RPA19868.976Stegastes_partitus
ENSPREG00000010119RPA18863.309ENSSSCG00000017822RPA19863.170Sus_scrofa
ENSPREG00000010119RPA110051.699ENSTGUG00000005775RPA19951.699Taeniopygia_guttata
ENSPREG00000010119RPA19171.298ENSTRUG00000003616rpa19271.136Takifugu_rubripes
ENSPREG00000010119RPA110067.251ENSTRUG00000000405RPA19967.927Takifugu_rubripes
ENSPREG00000010119RPA19958.333ENSTNIG00000016199rpa19958.185Tetraodon_nigroviridis
ENSPREG00000010119RPA16564.920ENSTBEG00000002709RPA17364.920Tupaia_belangeri
ENSPREG00000010119RPA18263.098ENSTTRG00000001169RPA19063.098Tursiops_truncatus
ENSPREG00000010119RPA17967.308ENSUAMG00000015676RPA19167.308Ursus_americanus
ENSPREG00000010119RPA18763.946ENSUMAG00000009328RPA19763.170Ursus_maritimus
ENSPREG00000010119RPA19950.893ENSVPAG00000009443RPA19950.744Vicugna_pacos
ENSPREG00000010119RPA110052.167ENSVVUG00000021715RPA19952.880Vulpes_vulpes
ENSPREG00000010119RPA18167.356ENSXETG00000013538rpa19954.844Xenopus_tropicalis
ENSPREG00000010119RPA18369.059ENSXCOG00000010068rpa18869.059Xiphophorus_couchianus
ENSPREG00000010119RPA19680.805ENSXCOG00000009899-10080.062Xiphophorus_couchianus
ENSPREG00000010119RPA110090.429ENSXMAG00000010333RPA110090.143Xiphophorus_maculatus
ENSPREG00000010119RPA19956.250ENSXMAG00000004102rpa19269.037Xiphophorus_maculatus

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us