EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPREG00000010347 (Gene tree)
Gene ID: 103470600
Gene Symbol: sf3a1
Alias: -
Full Name: splicing factor 3a subunit 1
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Plus strand
Length: 8014 bases
Position: chrLG9:29005783-29013796
Accession: 103470600
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000015353	PRP21_like_P	PF12230.8	8.5e-53	1	1
ENSPREP00000015353	Surp	PF01805.20	7.3e-46	1	2
ENSPREP00000015353	Surp	PF01805.20	7.3e-46	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000015510	-	4759	XM_008419165	ENSPREP00000015353	786 (aa)	XP_008417387	UPI0004A25A00

Gene Model

Click here to download ENSPREG00000010347's gene model file

Pathways

Pathway ID	Pathway Name	Source
pret03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000010347's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000010347	sf3a1	97	85.621	ENSG00000099995	SF3A1	100	83.774	Homo_sapiens
ENSPREG00000010347	sf3a1	100	95.299	ENSAPOG00000020465	sf3a1	100	95.299	Acanthochromis_polyacanthus
ENSPREG00000010347	sf3a1	97	85.621	ENSAMEG00000007737	SF3A1	100	83.563	Ailuropoda_melanoleuca
ENSPREG00000010347	sf3a1	100	95.044	ENSACIG00000020672	sf3a1	100	95.044	Amphilophus_citrinellus
ENSPREG00000010347	sf3a1	100	94.917	ENSAOCG00000003060	sf3a1	100	94.917	Amphiprion_ocellaris
ENSPREG00000010347	sf3a1	100	95.044	ENSAPEG00000010735	sf3a1	100	95.044	Amphiprion_percula
ENSPREG00000010347	sf3a1	97	94.510	ENSATEG00000021201	sf3a1	96	94.510	Anabas_testudineus
ENSPREG00000010347	sf3a1	96	84.848	ENSAPLG00000009057	SF3A1	100	84.056	Anas_platyrhynchos
ENSPREG00000010347	sf3a1	100	80.988	ENSACAG00000009415	SF3A1	100	80.741	Anolis_carolinensis
ENSPREG00000010347	sf3a1	99	84.036	ENSANAG00000032045	SF3A1	100	83.774	Aotus_nancymaae
ENSPREG00000010347	sf3a1	100	93.139	ENSACLG00000012622	sf3a1	100	93.901	Astatotilapia_calliptera
ENSPREG00000010347	sf3a1	99	87.913	ENSAMXG00000005382	sf3a1	99	88.168	Astyanax_mexicanus
ENSPREG00000010347	sf3a1	97	85.490	ENSBTAG00000003390	SF3A1	100	83.668	Bos_taurus
ENSPREG00000010347	sf3a1	81	44.717	WBGene00004188	prp-21	90	44.151	Caenorhabditis_elegans
ENSPREG00000010347	sf3a1	97	85.359	ENSCJAG00000010370	SF3A1	100	83.522	Callithrix_jacchus
ENSPREG00000010347	sf3a1	97	85.490	ENSCAFG00000012559	SF3A1	100	83.668	Canis_familiaris
ENSPREG00000010347	sf3a1	97	85.490	ENSCAFG00020000838	SF3A1	100	83.668	Canis_lupus_dingo
ENSPREG00000010347	sf3a1	97	85.359	ENSCHIG00000018642	SF3A1	100	83.543	Capra_hircus
ENSPREG00000010347	sf3a1	97	85.621	ENSTSYG00000004739	SF3A1	100	83.794	Carlito_syrichta
ENSPREG00000010347	sf3a1	94	68.591	ENSCAPG00000015414	SF3A1	97	68.859	Cavia_aperea
ENSPREG00000010347	sf3a1	99	83.974	ENSCPOG00000014589	SF3A1	100	83.543	Cavia_porcellus
ENSPREG00000010347	sf3a1	99	84.036	ENSCCAG00000032006	SF3A1	100	83.774	Cebus_capucinus
ENSPREG00000010347	sf3a1	97	85.621	ENSCATG00000029241	SF3A1	100	83.794	Cercocebus_atys
ENSPREG00000010347	sf3a1	97	84.884	ENSCLAG00000006508	SF3A1	100	84.025	Chinchilla_lanigera
ENSPREG00000010347	sf3a1	97	85.621	ENSCSAG00000009470	SF3A1	100	83.774	Chlorocebus_sabaeus
ENSPREG00000010347	sf3a1	58	90.458	ENSCHOG00000005201	SF3A1	65	90.458	Choloepus_hoffmanni
ENSPREG00000010347	sf3a1	100	81.967	ENSCPBG00000007595	SF3A1	100	82.850	Chrysemys_picta_bellii
ENSPREG00000010347	sf3a1	97	52.235	ENSCING00000008526	-	98	51.729	Ciona_intestinalis
ENSPREG00000010347	sf3a1	93	64.035	ENSCSAVG00000005608	-	100	50.769	Ciona_savignyi
ENSPREG00000010347	sf3a1	97	85.621	ENSCANG00000033564	SF3A1	100	83.774	Colobus_angolensis_palliatus
ENSPREG00000010347	sf3a1	97	85.395	ENSCGRG00001008933	Sf3a1	100	83.522	Cricetulus_griseus_chok1gshd
ENSPREG00000010347	sf3a1	97	85.395	ENSCGRG00000006127	Sf3a1	100	83.522	Cricetulus_griseus_crigri
ENSPREG00000010347	sf3a1	100	90.228	ENSCSEG00000010792	sf3a1	100	90.102	Cynoglossus_semilaevis
ENSPREG00000010347	sf3a1	100	95.547	ENSCVAG00000004560	sf3a1	100	95.547	Cyprinodon_variegatus
ENSPREG00000010347	sf3a1	100	86.312	ENSDARG00000041887	sf3a1	100	89.831	Danio_rerio
ENSPREG00000010347	sf3a1	97	85.509	ENSDNOG00000010629	SF3A1	100	83.438	Dasypus_novemcinctus
ENSPREG00000010347	sf3a1	97	85.490	ENSDORG00000005613	Sf3a1	100	83.668	Dipodomys_ordii
ENSPREG00000010347	sf3a1	84	60.829	FBgn0266917	Sf3a1	99	50.367	Drosophila_melanogaster
ENSPREG00000010347	sf3a1	85	83.558	ENSETEG00000017194	SF3A1	95	84.604	Echinops_telfairi
ENSPREG00000010347	sf3a1	97	67.497	ENSEBUG00000001285	sf3a1	95	68.883	Eptatretus_burgeri
ENSPREG00000010347	sf3a1	99	84.163	ENSEASG00005010254	SF3A1	100	83.899	Equus_asinus_asinus
ENSPREG00000010347	sf3a1	99	84.163	ENSECAG00000023962	SF3A1	100	83.899	Equus_caballus
ENSPREG00000010347	sf3a1	74	91.803	ENSEEUG00000003159	SF3A1	83	91.803	Erinaceus_europaeus
ENSPREG00000010347	sf3a1	100	86.819	ENSELUG00000022578	sf3a1	100	87.706	Esox_lucius
ENSPREG00000010347	sf3a1	97	85.229	ENSFCAG00000011932	SF3A1	100	83.417	Felis_catus
ENSPREG00000010347	sf3a1	96	83.355	ENSFALG00000006944	SF3A1	100	82.997	Ficedula_albicollis
ENSPREG00000010347	sf3a1	97	85.359	ENSFDAG00000009560	SF3A1	100	83.543	Fukomys_damarensis
ENSPREG00000010347	sf3a1	100	96.565	ENSFHEG00000010866	sf3a1	100	96.565	Fundulus_heteroclitus
ENSPREG00000010347	sf3a1	100	86.658	ENSGMOG00000016024	sf3a1	100	85.535	Gadus_morhua
ENSPREG00000010347	sf3a1	96	84.960	ENSGALG00000007937	SF3A1	100	83.627	Gallus_gallus
ENSPREG00000010347	sf3a1	100	98.601	ENSGAFG00000009111	sf3a1	100	98.601	Gambusia_affinis
ENSPREG00000010347	sf3a1	100	88.763	ENSGACG00000011893	sf3a1	100	88.258	Gasterosteus_aculeatus
ENSPREG00000010347	sf3a1	96	81.711	ENSGAGG00000000762	SF3A1	99	82.368	Gopherus_agassizii
ENSPREG00000010347	sf3a1	97	85.621	ENSGGOG00000012631	SF3A1	100	83.774	Gorilla_gorilla
ENSPREG00000010347	sf3a1	100	94.409	ENSHBUG00000015795	sf3a1	100	94.028	Haplochromis_burtoni
ENSPREG00000010347	sf3a1	99	83.974	ENSHGLG00000007907	SF3A1	100	83.543	Heterocephalus_glaber_female
ENSPREG00000010347	sf3a1	99	83.974	ENSHGLG00100013799	SF3A1	100	83.543	Heterocephalus_glaber_male
ENSPREG00000010347	sf3a1	100	88.959	ENSHCOG00000015423	sf3a1	100	88.706	Hippocampus_comes
ENSPREG00000010347	sf3a1	98	85.142	ENSIPUG00000002470	sf3a1	99	85.659	Ictalurus_punctatus
ENSPREG00000010347	sf3a1	97	85.359	ENSSTOG00000013892	SF3A1	100	83.648	Ictidomys_tridecemlineatus
ENSPREG00000010347	sf3a1	97	85.359	ENSJJAG00000022566	Sf3a1	100	83.417	Jaculus_jaculus
ENSPREG00000010347	sf3a1	100	93.774	ENSKMAG00000002400	sf3a1	100	93.774	Kryptolebias_marmoratus
ENSPREG00000010347	sf3a1	100	92.249	ENSLBEG00000022974	sf3a1	100	91.868	Labrus_bergylta
ENSPREG00000010347	sf3a1	100	83.671	ENSLACG00000003565	SF3A1	100	84.177	Latimeria_chalumnae
ENSPREG00000010347	sf3a1	100	86.852	ENSLOCG00000008251	sf3a1	99	87.105	Lepisosteus_oculatus
ENSPREG00000010347	sf3a1	97	85.752	ENSLAFG00000000448	SF3A1	100	83.920	Loxodonta_africana
ENSPREG00000010347	sf3a1	99	54.843	ENSLAFG00000026032	-	99	53.500	Loxodonta_africana
ENSPREG00000010347	sf3a1	97	85.490	ENSMFAG00000031979	SF3A1	100	83.648	Macaca_fascicularis
ENSPREG00000010347	sf3a1	97	85.490	ENSMMUG00000005547	SF3A1	100	83.648	Macaca_mulatta
ENSPREG00000010347	sf3a1	97	85.621	ENSMNEG00000037229	SF3A1	100	83.774	Macaca_nemestrina
ENSPREG00000010347	sf3a1	97	85.621	ENSMLEG00000041908	SF3A1	100	83.774	Mandrillus_leucophaeus
ENSPREG00000010347	sf3a1	98	93.912	ENSMAMG00000006460	sf3a1	97	93.912	Mastacembelus_armatus
ENSPREG00000010347	sf3a1	100	93.139	ENSMZEG00005009633	sf3a1	100	93.901	Maylandia_zebra
ENSPREG00000010347	sf3a1	96	84.960	ENSMGAG00000001330	SF3A1	99	84.825	Meleagris_gallopavo
ENSPREG00000010347	sf3a1	93	81.335	ENSMAUG00000020317	Sf3a1	100	78.030	Mesocricetus_auratus
ENSPREG00000010347	sf3a1	97	85.621	ENSMICG00000010038	SF3A1	100	83.794	Microcebus_murinus
ENSPREG00000010347	sf3a1	97	85.229	ENSMOCG00000008438	Sf3a1	100	83.543	Microtus_ochrogaster
ENSPREG00000010347	sf3a1	100	89.199	ENSMMOG00000015588	sf3a1	99	89.962	Mola_mola
ENSPREG00000010347	sf3a1	98	83.139	ENSMODG00000009270	SF3A1	100	82.997	Monodelphis_domestica
ENSPREG00000010347	sf3a1	100	93.274	ENSMALG00000000148	sf3a1	100	93.401	Monopterus_albus
ENSPREG00000010347	sf3a1	97	85.395	MGP_CAROLIEiJ_G0016029	Sf3a1	99	82.449	Mus_caroli
ENSPREG00000010347	sf3a1	97	85.395	ENSMUSG00000002129	Sf3a1	99	82.449	Mus_musculus
ENSPREG00000010347	sf3a1	97	85.263	MGP_PahariEiJ_G0016862	Sf3a1	99	82.449	Mus_pahari
ENSPREG00000010347	sf3a1	97	85.395	MGP_SPRETEiJ_G0016870	Sf3a1	99	82.449	Mus_spretus
ENSPREG00000010347	sf3a1	97	84.706	ENSMPUG00000013144	SF3A1	100	83.794	Mustela_putorius_furo
ENSPREG00000010347	sf3a1	97	85.359	ENSMLUG00000002139	SF3A1	100	83.522	Myotis_lucifugus
ENSPREG00000010347	sf3a1	99	84.163	ENSNGAG00000016977	Sf3a1	100	83.899	Nannospalax_galili
ENSPREG00000010347	sf3a1	100	93.782	ENSNBRG00000016642	sf3a1	100	93.401	Neolamprologus_brichardi
ENSPREG00000010347	sf3a1	97	85.621	ENSNLEG00000003686	SF3A1	100	83.774	Nomascus_leucogenys
ENSPREG00000010347	sf3a1	94	74.932	ENSMEUG00000008741	SF3A1	100	74.901	Notamacropus_eugenii
ENSPREG00000010347	sf3a1	97	86.144	ENSOPRG00000016636	SF3A1	100	84.296	Ochotona_princeps
ENSPREG00000010347	sf3a1	97	85.490	ENSODEG00000002571	SF3A1	100	83.627	Octodon_degus
ENSPREG00000010347	sf3a1	100	94.663	ENSONIG00000010848	sf3a1	100	94.282	Oreochromis_niloticus
ENSPREG00000010347	sf3a1	97	85.490	ENSOCUG00000007633	SF3A1	100	83.774	Oryctolagus_cuniculus
ENSPREG00000010347	sf3a1	96	93.767	ENSORLG00000013050	sf3a1	99	93.501	Oryzias_latipes
ENSPREG00000010347	sf3a1	99	91.049	ENSORLG00020003236	sf3a1	97	91.366	Oryzias_latipes_hni
ENSPREG00000010347	sf3a1	100	93.393	ENSORLG00015017411	sf3a1	100	93.139	Oryzias_latipes_hsok
ENSPREG00000010347	sf3a1	100	93.774	ENSOMEG00000013362	sf3a1	100	93.520	Oryzias_melastigma
ENSPREG00000010347	sf3a1	97	85.621	ENSOGAG00000012931	SF3A1	100	83.794	Otolemur_garnettii
ENSPREG00000010347	sf3a1	97	83.922	ENSOARG00000006849	SF3A1	100	82.161	Ovis_aries
ENSPREG00000010347	sf3a1	97	84.837	ENSPPAG00000041790	SF3A1	100	82.893	Pan_paniscus
ENSPREG00000010347	sf3a1	97	85.229	ENSPPRG00000004391	SF3A1	100	83.417	Panthera_pardus
ENSPREG00000010347	sf3a1	97	85.098	ENSPTIG00000000844	SF3A1	99	85.359	Panthera_tigris_altaica
ENSPREG00000010347	sf3a1	97	85.621	ENSPTRG00000014240	SF3A1	100	83.774	Pan_troglodytes
ENSPREG00000010347	sf3a1	97	85.621	ENSPANG00000020772	SF3A1	100	83.774	Papio_anubis
ENSPREG00000010347	sf3a1	79	91.209	ENSPSIG00000012803	SF3A1	99	91.209	Pelodiscus_sinensis
ENSPREG00000010347	sf3a1	97	89.935	ENSPMGG00000023096	sf3a1	100	90.850	Periophthalmus_magnuspinnatus
ENSPREG00000010347	sf3a1	97	85.526	ENSPEMG00000009494	Sf3a1	100	83.648	Peromyscus_maniculatus_bairdii
ENSPREG00000010347	sf3a1	71	75.000	ENSPMAG00000007139	-	100	73.179	Petromyzon_marinus
ENSPREG00000010347	sf3a1	97	84.444	ENSPCIG00000022692	SF3A1	100	82.997	Phascolarctos_cinereus
ENSPREG00000010347	sf3a1	100	87.944	ENSPFOG00000016768	sf3a1	100	87.944	Poecilia_formosa
ENSPREG00000010347	sf3a1	100	99.109	ENSPLAG00000017268	sf3a1	100	99.109	Poecilia_latipinna
ENSPREG00000010347	sf3a1	96	98.795	ENSPMEG00000019811	sf3a1	100	98.795	Poecilia_mexicana
ENSPREG00000010347	sf3a1	97	85.621	ENSPPYG00000011707	SF3A1	100	83.774	Pongo_abelii
ENSPREG00000010347	sf3a1	57	84.298	ENSPCAG00000003266	SF3A1	57	84.298	Procavia_capensis
ENSPREG00000010347	sf3a1	97	85.359	ENSPCOG00000026630	SF3A1	100	83.543	Propithecus_coquereli
ENSPREG00000010347	sf3a1	95	85.007	ENSPVAG00000017719	SF3A1	94	85.141	Pteropus_vampyrus
ENSPREG00000010347	sf3a1	100	94.282	ENSPNYG00000018706	sf3a1	100	93.901	Pundamilia_nyererei
ENSPREG00000010347	sf3a1	99	87.786	ENSPNAG00000003721	sf3a1	99	87.532	Pygocentrus_nattereri
ENSPREG00000010347	sf3a1	99	84.021	ENSRNOG00000005218	Sf3a1	99	82.211	Rattus_norvegicus
ENSPREG00000010347	sf3a1	97	85.490	ENSRBIG00000032167	SF3A1	100	83.648	Rhinopithecus_bieti
ENSPREG00000010347	sf3a1	97	85.490	ENSRROG00000044908	SF3A1	100	83.648	Rhinopithecus_roxellana
ENSPREG00000010347	sf3a1	93	85.578	ENSSBOG00000021960	SF3A1	98	85.629	Saimiri_boliviensis_boliviensis
ENSPREG00000010347	sf3a1	97	81.176	ENSSHAG00000003666	SF3A1	97	82.484	Sarcophilus_harrisii
ENSPREG00000010347	sf3a1	100	90.013	ENSSFOG00015004579	sf3a1	100	90.898	Scleropages_formosus
ENSPREG00000010347	sf3a1	100	90.089	ENSSMAG00000004275	sf3a1	100	89.835	Scophthalmus_maximus
ENSPREG00000010347	sf3a1	100	93.520	ENSSDUG00000022219	sf3a1	100	93.266	Seriola_dumerili
ENSPREG00000010347	sf3a1	100	93.520	ENSSLDG00000012642	sf3a1	100	93.266	Seriola_lalandi_dorsalis
ENSPREG00000010347	sf3a1	97	82.484	ENSSARG00000005960	SF3A1	99	82.614	Sorex_araneus
ENSPREG00000010347	sf3a1	96	83.636	ENSSPUG00000018863	SF3A1	100	83.333	Sphenodon_punctatus
ENSPREG00000010347	sf3a1	100	94.409	ENSSPAG00000011856	sf3a1	100	94.028	Stegastes_partitus
ENSPREG00000010347	sf3a1	97	84.706	ENSSSCG00000010002	SF3A1	100	83.668	Sus_scrofa
ENSPREG00000010347	sf3a1	96	84.737	ENSTGUG00000010547	SF3A1	99	85.065	Taeniopygia_guttata
ENSPREG00000010347	sf3a1	100	89.072	ENSTRUG00000006118	sf3a1	100	89.072	Takifugu_rubripes
ENSPREG00000010347	sf3a1	64	87.361	ENSTNIG00000005713	sf3a1	89	89.381	Tetraodon_nigroviridis
ENSPREG00000010347	sf3a1	97	78.954	ENSTBEG00000012771	SF3A1	100	77.358	Tupaia_belangeri
ENSPREG00000010347	sf3a1	97	85.248	ENSTTRG00000001535	SF3A1	100	83.563	Tursiops_truncatus
ENSPREG00000010347	sf3a1	99	82.405	ENSUAMG00000006750	SF3A1	99	82.658	Ursus_americanus
ENSPREG00000010347	sf3a1	99	84.427	ENSUMAG00000016665	SF3A1	99	84.685	Ursus_maritimus
ENSPREG00000010347	sf3a1	97	85.490	ENSVVUG00000003075	SF3A1	100	83.668	Vulpes_vulpes
ENSPREG00000010347	sf3a1	100	78.195	ENSXETG00000016144	sf3a1	96	85.081	Xenopus_tropicalis
ENSPREG00000010347	sf3a1	100	98.219	ENSXCOG00000015653	sf3a1	100	98.219	Xiphophorus_couchianus
ENSPREG00000010347	sf3a1	100	98.473	ENSXMAG00000002753	sf3a1	100	98.473	Xiphophorus_maculatus