EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSPREG00000010911 (Gene tree)
Gene ID
103472449
Gene Symbol
pabpc1b
Alias
-
Full Name
polyadenylate-binding protein 1
Gene Type
protein_coding
Species
Poecilia_reticulata
Status
putative
Strand
Plus strand
Length
7382 bases
Position
chrLG11:15407474-15414855
Accession
103472449
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSPREP00000016212PABPPF00658.184.8e-3211
ENSPREP00000016193PABPPF00658.185.3e-3211
ENSPREP00000016212RRM_5PF13893.68e-0912
ENSPREP00000016212RRM_5PF13893.68e-0922
ENSPREP00000016193RRM_5PF13893.61e-0812
ENSPREP00000016193RRM_5PF13893.61e-0822
ENSPREP00000016212RRM_1PF00076.221.2e-8914
ENSPREP00000016212RRM_1PF00076.221.2e-8924
ENSPREP00000016212RRM_1PF00076.221.2e-8934
ENSPREP00000016212RRM_1PF00076.221.2e-8944
ENSPREP00000016193RRM_1PF00076.221.6e-8914
ENSPREP00000016193RRM_1PF00076.221.6e-8924
ENSPREP00000016193RRM_1PF00076.221.6e-8934
ENSPREP00000016193RRM_1PF00076.221.6e-8944
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSPRET00000016383-1824-ENSPREP00000016212607 (aa)--
ENSPRET00000016364-1912XM_008422096ENSPREP00000016193634 (aa)XP_008420318UPI0004A30D0E
Gene Model
Click here to download ENSPREG00000010911's gene model file
Pathways
Pathway IDPathway NameSource
pret03013RNA transportKEGG
pret03015mRNA surveillance pathwayKEGG
pret03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000010911's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSPREG00000010911pabpc1b5635.227ENSPREG00000018002-5736.905
ENSPREG00000010911pabpc1b5932.955ENSPREG00000022185-6234.524
ENSPREG00000010911pabpc1b5838.889ENSPREG00000021088-5538.889
ENSPREG00000010911pabpc1b6137.349ENSPREG00000017160ELAVL28537.349
ENSPREG00000010911pabpc1b6130.035ENSPREG00000002689tial19035.036
ENSPREG00000010911pabpc1b5937.333ENSPREG00000000978rbm195837.333
ENSPREG00000010911pabpc1b6981.010ENSPREG00000015886pabpc1l10081.010
ENSPREG00000010911pabpc1b6136.986ENSPREG00000018923celf3a6036.986
ENSPREG00000010911pabpc1b6137.349ENSPREG00000006971elavl39237.349
ENSPREG00000010911pabpc1b5730.921ENSPREG00000010619HNRNPA07330.921
ENSPREG00000010911pabpc1b9975.748ENSPREG00000001589pabpc49976.160
ENSPREG00000010911pabpc1b6233.684ENSPREG00000015038rbms2a5433.684
ENSPREG00000010911pabpc1b5036.986ENSPREG00000017378celf3b6936.986
ENSPREG00000010911pabpc1b9991.076ENSPREG00000019595pabpc1a10090.909
ENSPREG00000010911pabpc1b6136.145ENSPREG00000018937elavl48436.145
ENSPREG00000010911pabpc1b6232.632ENSPREG00000018221-6032.632
ENSPREG00000010911pabpc1b5635.227ENSPREG00000007795-5836.047
ENSPREG00000010911pabpc1b6038.251ENSPREG00000011076sf3b47038.251
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSPREG00000010911pabpc1b6079.592ENSG00000184388PABPC1L2B9879.592Homo_sapiens
ENSPREG00000010911pabpc1b6079.592ENSG00000186288PABPC1L2A9879.592Homo_sapiens
ENSPREG00000010911pabpc1b10090.439ENSAPOG00000015105pabpc1a10090.125Acanthochromis_polyacanthus
ENSPREG00000010911pabpc1b10095.741ENSAPOG00000017776pabpc1b10095.741Acanthochromis_polyacanthus
ENSPREG00000010911pabpc1b6079.592ENSAMEG00000019441-9879.592Ailuropoda_melanoleuca
ENSPREG00000010911pabpc1b10090.125ENSACIG00000004685pabpc1a10089.969Amphilophus_citrinellus
ENSPREG00000010911pabpc1b10089.905ENSACIG00000018366pabpc1b10087.346Amphilophus_citrinellus
ENSPREG00000010911pabpc1b10090.125ENSAOCG00000011656pabpc1a10089.028Amphiprion_ocellaris
ENSPREG00000010911pabpc1b10095.584ENSAOCG00000019839pabpc1b10095.584Amphiprion_ocellaris
ENSPREG00000010911pabpc1b10095.584ENSAPEG00000010435pabpc1b10095.584Amphiprion_percula
ENSPREG00000010911pabpc1b10090.125ENSAPEG00000006963pabpc1a10089.028Amphiprion_percula
ENSPREG00000010911pabpc1b10090.125ENSATEG00000024852pabpc1a10089.969Anabas_testudineus
ENSPREG00000010911pabpc1b10094.654ENSATEG00000012917pabpc1b10094.654Anabas_testudineus
ENSPREG00000010911pabpc1b6079.592ENSANAG00000019431-9879.592Aotus_nancymaae
ENSPREG00000010911pabpc1b6079.592ENSANAG00000019429-9879.592Aotus_nancymaae
ENSPREG00000010911pabpc1b10094.006ENSACLG00000014335pabpc1b10094.006Astatotilapia_calliptera
ENSPREG00000010911pabpc1b9991.533ENSACLG00000009399pabpc1a10091.364Astatotilapia_calliptera
ENSPREG00000010911pabpc1b10093.543ENSAMXG00000008599pabpc1b10093.071Astyanax_mexicanus
ENSPREG00000010911pabpc1b6276.555ENSBTAG00000052491-9876.555Bos_taurus
ENSPREG00000010911pabpc1b6278.537ENSBTAG00000050902-9878.537Bos_taurus
ENSPREG00000010911pabpc1b6079.592ENSCJAG00000041326-9879.592Callithrix_jacchus
ENSPREG00000010911pabpc1b6278.537ENSCAFG00020002052-9878.537Canis_lupus_dingo
ENSPREG00000010911pabpc1b6079.592ENSCHIG00000011138-9879.592Capra_hircus
ENSPREG00000010911pabpc1b6079.592ENSCHIG00000006283-9879.592Capra_hircus
ENSPREG00000010911pabpc1b6079.592ENSTSYG00000001775-9879.592Carlito_syrichta
ENSPREG00000010911pabpc1b6079.592ENSCPOG00000009525-9879.592Cavia_porcellus
ENSPREG00000010911pabpc1b6079.592ENSCCAG00000031524-9879.592Cebus_capucinus
ENSPREG00000010911pabpc1b6079.592ENSCATG00000042826-9879.592Cercocebus_atys
ENSPREG00000010911pabpc1b6079.592ENSCATG00000043125-9879.592Cercocebus_atys
ENSPREG00000010911pabpc1b6078.571ENSCLAG00000017412-9878.571Chinchilla_lanigera
ENSPREG00000010911pabpc1b6078.571ENSCLAG00000017409-9878.571Chinchilla_lanigera
ENSPREG00000010911pabpc1b6079.592ENSCSAG00000000102-9879.592Chlorocebus_sabaeus
ENSPREG00000010911pabpc1b6080.110ENSCGRG00001023387-9678.351Cricetulus_griseus_chok1gshd
ENSPREG00000010911pabpc1b9989.905ENSCSEG00000013324pabpc1a10089.748Cynoglossus_semilaevis
ENSPREG00000010911pabpc1b10091.009ENSCSEG00000015241-10091.009Cynoglossus_semilaevis
ENSPREG00000010911pabpc1b10096.220ENSCVAG00000005489pabpc1b10096.220Cyprinodon_variegatus
ENSPREG00000010911pabpc1b10090.125ENSCVAG00000021872pabpc1a10089.028Cyprinodon_variegatus
ENSPREG00000010911pabpc1b10090.409ENSDARG00000017219pabpc1a10089.780Danio_rerio
ENSPREG00000010911pabpc1b10092.913ENSDARG00000021140pabpc1b10092.913Danio_rerio
ENSPREG00000010911pabpc1b6080.423ENSDNOG00000030926-9878.061Dasypus_novemcinctus
ENSPREG00000010911pabpc1b6078.061ENSDORG00000011362-9878.061Dipodomys_ordii
ENSPREG00000010911pabpc1b6278.155ENSEASG00005010399-9878.155Equus_asinus_asinus
ENSPREG00000010911pabpc1b6278.155ENSECAG00000002620-9878.155Equus_caballus
ENSPREG00000010911pabpc1b6275.000ENSEEUG00000008203-9875.000Erinaceus_europaeus
ENSPREG00000010911pabpc1b9990.881ENSELUG00000003614pabpc1a10090.094Esox_lucius
ENSPREG00000010911pabpc1b10091.680ENSELUG00000015062-10091.680Esox_lucius
ENSPREG00000010911pabpc1b6259.052ENSELUG00000005389-9759.052Esox_lucius
ENSPREG00000010911pabpc1b6079.592ENSFCAG00000039701-9879.592Felis_catus
ENSPREG00000010911pabpc1b6079.592ENSFDAG00000005484-9879.592Fukomys_damarensis
ENSPREG00000010911pabpc1b10089.969ENSFHEG00000018979pabpc1a10089.812Fundulus_heteroclitus
ENSPREG00000010911pabpc1b10097.319ENSFHEG00000008186pabpc1b10097.319Fundulus_heteroclitus
ENSPREG00000010911pabpc1b9988.180ENSGMOG00000013448pabpc1a9988.180Gadus_morhua
ENSPREG00000010911pabpc1b10083.333ENSGMOG00000002448-10082.710Gadus_morhua
ENSPREG00000010911pabpc1b10089.655ENSGAFG00000019750pabpc1a10088.715Gambusia_affinis
ENSPREG00000010911pabpc1b10099.369ENSGAFG00000010193pabpc1b10099.369Gambusia_affinis
ENSPREG00000010911pabpc1b10090.282ENSGACG00000003572pabpc1a10090.125Gasterosteus_aculeatus
ENSPREG00000010911pabpc1b10092.031ENSGACG00000003771pabpc1b10092.031Gasterosteus_aculeatus
ENSPREG00000010911pabpc1b6079.592ENSGGOG00000038606-9879.592Gorilla_gorilla
ENSPREG00000010911pabpc1b6079.592ENSGGOG00000043933-9879.592Gorilla_gorilla
ENSPREG00000010911pabpc1b10094.006ENSHBUG00000002075pabpc1b10094.006Haplochromis_burtoni
ENSPREG00000010911pabpc1b9991.533ENSHBUG00000020487pabpc1a10091.364Haplochromis_burtoni
ENSPREG00000010911pabpc1b6079.592ENSHGLG00000019668-9879.592Heterocephalus_glaber_female
ENSPREG00000010911pabpc1b6079.592ENSHGLG00000019762-9879.592Heterocephalus_glaber_female
ENSPREG00000010911pabpc1b6079.592ENSHGLG00100020854-9879.592Heterocephalus_glaber_male
ENSPREG00000010911pabpc1b9876.586ENSHCOG00000003175pabpc1b9981.915Hippocampus_comes
ENSPREG00000010911pabpc1b10089.969ENSHCOG00000013502pabpc1a10089.812Hippocampus_comes
ENSPREG00000010911pabpc1b7855.532ENSIPUG00000021244-6555.532Ictalurus_punctatus
ENSPREG00000010911pabpc1b10088.661ENSIPUG00000008848pabpc1a10088.504Ictalurus_punctatus
ENSPREG00000010911pabpc1b10087.685ENSIPUG00000010791-10087.685Ictalurus_punctatus
ENSPREG00000010911pabpc1b8855.224ENSIPUG00000018724-8655.224Ictalurus_punctatus
ENSPREG00000010911pabpc1b6080.102ENSSTOG00000026028-9880.102Ictidomys_tridecemlineatus
ENSPREG00000010911pabpc1b6080.102ENSSTOG00000022096-9880.102Ictidomys_tridecemlineatus
ENSPREG00000010911pabpc1b6079.082ENSJJAG00000007037-9879.082Jaculus_jaculus
ENSPREG00000010911pabpc1b10094.322ENSKMAG00000008049pabpc1b10093.849Kryptolebias_marmoratus
ENSPREG00000010911pabpc1b10090.125ENSKMAG00000000605pabpc1a10089.969Kryptolebias_marmoratus
ENSPREG00000010911pabpc1b10089.812ENSLBEG00000024002-10089.655Labrus_bergylta
ENSPREG00000010911pabpc1b10094.164ENSLBEG00000026845pabpc1b10094.164Labrus_bergylta
ENSPREG00000010911pabpc1b6078.974ENSLAFG00000023096-9878.974Loxodonta_africana
ENSPREG00000010911pabpc1b6079.188ENSMFAG00000028878-9879.188Macaca_fascicularis
ENSPREG00000010911pabpc1b6079.592ENSMMUG00000037681-9879.592Macaca_mulatta
ENSPREG00000010911pabpc1b6079.592ENSMMUG00000009740-9879.592Macaca_mulatta
ENSPREG00000010911pabpc1b6079.592ENSMMUG00000039929-9879.592Macaca_mulatta
ENSPREG00000010911pabpc1b6079.592ENSMNEG00000037732-9879.592Macaca_nemestrina
ENSPREG00000010911pabpc1b6079.592ENSMLEG00000027495-9879.592Mandrillus_leucophaeus
ENSPREG00000010911pabpc1b10095.584ENSMAMG00000014610pabpc1b10095.584Mastacembelus_armatus
ENSPREG00000010911pabpc1b10089.812ENSMAMG00000004502-10089.655Mastacembelus_armatus
ENSPREG00000010911pabpc1b9991.533ENSMZEG00005025416pabpc1a10091.364Maylandia_zebra
ENSPREG00000010911pabpc1b10094.006ENSMZEG00005026745pabpc1b10094.006Maylandia_zebra
ENSPREG00000010911pabpc1b6079.592ENSMICG00000047642-9879.592Microcebus_murinus
ENSPREG00000010911pabpc1b10088.197ENSMMOG00000018009pabpc1b10088.197Mola_mola
ENSPREG00000010911pabpc1b9990.160ENSMMOG00000018044pabpc1a10090.000Mola_mola
ENSPREG00000010911pabpc1b9867.305ENSMODG00000015024-9966.455Monodelphis_domestica
ENSPREG00000010911pabpc1b9873.248ENSMODG00000013156-9873.440Monodelphis_domestica
ENSPREG00000010911pabpc1b10089.185ENSMALG00000013020-10089.185Monopterus_albus
ENSPREG00000010911pabpc1b10093.410ENSMALG00000006066pabpc1b10093.410Monopterus_albus
ENSPREG00000010911pabpc1b6081.967ENSNGAG00000012688-9879.082Nannospalax_galili
ENSPREG00000010911pabpc1b9991.533ENSNBRG00000003068-10091.364Neolamprologus_brichardi
ENSPREG00000010911pabpc1b10094.006ENSNBRG00000013737pabpc1b10094.006Neolamprologus_brichardi
ENSPREG00000010911pabpc1b6079.592ENSNLEG00000018128-9879.592Nomascus_leucogenys
ENSPREG00000010911pabpc1b6079.082ENSODEG00000018540-9879.082Octodon_degus
ENSPREG00000010911pabpc1b10089.969ENSONIG00000006871-10089.655Oreochromis_niloticus
ENSPREG00000010911pabpc1b10093.691ENSONIG00000002717pabpc1b10093.691Oreochromis_niloticus
ENSPREG00000010911pabpc1b6079.592ENSOCUG00000002565-9879.592Oryctolagus_cuniculus
ENSPREG00000010911pabpc1b9993.587ENSORLG00000002691pabpc1a9693.587Oryzias_latipes
ENSPREG00000010911pabpc1b10086.751ENSORLG00000003008-10085.962Oryzias_latipes
ENSPREG00000010911pabpc1b10086.751ENSORLG00020022259-10085.962Oryzias_latipes_hni
ENSPREG00000010911pabpc1b10089.812ENSORLG00020022398pabpc1a10089.655Oryzias_latipes_hni
ENSPREG00000010911pabpc1b10087.066ENSORLG00015010932-10086.278Oryzias_latipes_hsok
ENSPREG00000010911pabpc1b10089.655ENSORLG00015013633pabpc110089.498Oryzias_latipes_hsok
ENSPREG00000010911pabpc1b10090.125ENSOMEG00000020219pabpc1a10089.969Oryzias_melastigma
ENSPREG00000010911pabpc1b9985.126ENSOMEG00000013627pabpc1b10085.126Oryzias_melastigma
ENSPREG00000010911pabpc1b6079.592ENSOGAG00000029513-9879.592Otolemur_garnettii
ENSPREG00000010911pabpc1b6079.592ENSOGAG00000026047-9879.592Otolemur_garnettii
ENSPREG00000010911pabpc1b6079.592ENSOARG00000005943-9879.592Ovis_aries
ENSPREG00000010911pabpc1b6079.592ENSPPAG00000012920-9879.592Pan_paniscus
ENSPREG00000010911pabpc1b6079.592ENSPPRG00000011804-9879.592Panthera_pardus
ENSPREG00000010911pabpc1b6079.592ENSPPRG00000011809-9879.592Panthera_pardus
ENSPREG00000010911pabpc1b6079.592ENSPTRG00000028252-9879.592Pan_troglodytes
ENSPREG00000010911pabpc1b6079.592ENSPANG00000011549-9879.592Papio_anubis
ENSPREG00000010911pabpc1b10093.858ENSPKIG00000005676pabpc1b10093.543Paramormyrops_kingsleyae
ENSPREG00000010911pabpc1b7394.619ENSPMGG00000023134-9794.619Periophthalmus_magnuspinnatus
ENSPREG00000010911pabpc1b7392.825ENSPMGG00000022487pabpc1a9292.825Periophthalmus_magnuspinnatus
ENSPREG00000010911pabpc1b9971.542ENSPCIG00000016995-5471.040Phascolarctos_cinereus
ENSPREG00000010911pabpc1b10088.769ENSPFOG00000010815pabpc1a10088.598Poecilia_formosa
ENSPREG00000010911pabpc1b10099.685ENSPFOG00000005917pabpc1b10099.685Poecilia_formosa
ENSPREG00000010911pabpc1b100100.000ENSPLAG00000001388pabpc1b100100.000Poecilia_latipinna
ENSPREG00000010911pabpc1b10090.282ENSPLAG00000004114pabpc1a10089.185Poecilia_latipinna
ENSPREG00000010911pabpc1b10099.685ENSPMEG00000014399pabpc1b10099.685Poecilia_mexicana
ENSPREG00000010911pabpc1b10090.282ENSPMEG00000001334pabpc1a10089.185Poecilia_mexicana
ENSPREG00000010911pabpc1b6079.592ENSPPYG00000020468-9879.592Pongo_abelii
ENSPREG00000010911pabpc1b6279.592ENSPCAG00000005308-9879.592Procavia_capensis
ENSPREG00000010911pabpc1b6080.102ENSPCOG00000026349-9880.102Propithecus_coquereli
ENSPREG00000010911pabpc1b6280.000ENSPVAG00000016117-9880.000Pteropus_vampyrus
ENSPREG00000010911pabpc1b10089.969ENSPNYG00000005192pabpc1a10089.812Pundamilia_nyererei
ENSPREG00000010911pabpc1b10094.006ENSPNYG00000012578pabpc1b10094.006Pundamilia_nyererei
ENSPREG00000010911pabpc1b10093.543ENSPNAG00000024626pabpc1b10093.071Pygocentrus_nattereri
ENSPREG00000010911pabpc1b10089.937ENSPNAG00000028408pabpc1a10089.308Pygocentrus_nattereri
ENSPREG00000010911pabpc1b9991.017ENSRBIG00000028738-9591.017Rhinopithecus_bieti
ENSPREG00000010911pabpc1b6079.592ENSRBIG00000027173-9879.592Rhinopithecus_bieti
ENSPREG00000010911pabpc1b6079.592ENSRROG00000017404-9879.592Rhinopithecus_roxellana
ENSPREG00000010911pabpc1b9863.987ENSSHAG00000000511-10063.666Sarcophilus_harrisii
ENSPREG00000010911pabpc1b10091.024ENSSFOG00015006662pabpc1a10091.024Scleropages_formosus
ENSPREG00000010911pabpc1b7379.769ENSSFOG00015019668-9179.769Scleropages_formosus
ENSPREG00000010911pabpc1b10093.218ENSSFOG00015002752-10093.218Scleropages_formosus
ENSPREG00000010911pabpc1b10089.969ENSSMAG00000010803pabpc1a10089.812Scophthalmus_maximus
ENSPREG00000010911pabpc1b10094.479ENSSMAG00000006869pabpc1b10094.479Scophthalmus_maximus
ENSPREG00000010911pabpc1b10089.969ENSSDUG00000006675pabpc1a10089.812Seriola_dumerili
ENSPREG00000010911pabpc1b10093.533ENSSDUG00000011965pabpc1b10093.533Seriola_dumerili
ENSPREG00000010911pabpc1b10095.149ENSSLDG00000014156pabpc1b10095.149Seriola_lalandi_dorsalis
ENSPREG00000010911pabpc1b10089.969ENSSLDG00000011661pabpc1a10089.812Seriola_lalandi_dorsalis
ENSPREG00000010911pabpc1b10090.282ENSSPAG00000014453-10090.125Stegastes_partitus
ENSPREG00000010911pabpc1b10096.057ENSSPAG00000019265pabpc1b10096.057Stegastes_partitus
ENSPREG00000010911pabpc1b6079.592ENSSSCG00000032167-9879.592Sus_scrofa
ENSPREG00000010911pabpc1b6079.592ENSSSCG00000036336-9879.592Sus_scrofa
ENSPREG00000010911pabpc1b10089.342ENSTRUG00000011577-10089.342Takifugu_rubripes
ENSPREG00000010911pabpc1b10091.181ENSTRUG00000003767-10090.551Takifugu_rubripes
ENSPREG00000010911pabpc1b10091.223ENSTNIG00000009153pabpc1b10090.752Tetraodon_nigroviridis
ENSPREG00000010911pabpc1b10086.399ENSTNIG00000013307pabpc1a10086.399Tetraodon_nigroviridis
ENSPREG00000010911pabpc1b6079.592ENSTTRG00000013181-9879.592Tursiops_truncatus
ENSPREG00000010911pabpc1b6079.592ENSUAMG00000008089-9879.592Ursus_americanus
ENSPREG00000010911pabpc1b9754.207ENSUMAG00000023926-8968.508Ursus_maritimus
ENSPREG00000010911pabpc1b6079.592ENSUMAG00000003364-9879.592Ursus_maritimus
ENSPREG00000010911pabpc1b6178.500ENSVVUG00000015892-9778.500Vulpes_vulpes
ENSPREG00000010911pabpc1b9946.588ENSXETG00000015439-10046.588Xenopus_tropicalis
ENSPREG00000010911pabpc1b10086.593ENSXCOG00000017066pabpc1a10086.751Xiphophorus_couchianus
ENSPREG00000010911pabpc1b10098.026ENSXCOG00000019901pabpc1b10098.026Xiphophorus_couchianus
ENSPREG00000010911pabpc1b10099.527ENSXMAG00000003753pabpc1b10099.527Xiphophorus_maculatus
ENSPREG00000010911pabpc1b10090.125ENSXMAG00000002555pabpc1a10089.969Xiphophorus_maculatus

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us