EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPREG00000011247 (Gene tree)
Gene ID: 103463333
Gene Symbol: -
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Minus strand
Length: 15758 bases
Position: chrLG4:11644288-11660045
Accession: 103463333
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000016656	UPF1_Zn_bind	PF09416.10	1.7e-74	1	1
ENSPREP00000016656	ResIII	PF04851.15	3.2e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000016836	-	3294	XM_008406616	ENSPREP00000016656	1097 (aa)	XP_008404838	UPI0004A41882

Gene Model

Click here to download ENSPREG00000011247's gene model file

Pathways

Pathway ID	Pathway Name	Source
pret03013	RNA transport	KEGG
pret03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000011247's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPREG00000011247	-	100	91.105	ENSPREG00000009940	upf1	100	90.746

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000011247	-	100	92.054	ENSG00000005007	UPF1	100	92.143	Homo_sapiens
ENSPREG00000011247	-	100	98.093	ENSAPOG00000010916	-	100	98.093	Acanthochromis_polyacanthus
ENSPREG00000011247	-	100	93.013	ENSAPOG00000023773	upf1	100	92.922	Acanthochromis_polyacanthus
ENSPREG00000011247	-	100	91.385	ENSAMEG00000011474	UPF1	100	91.474	Ailuropoda_melanoleuca
ENSPREG00000011247	-	93	97.659	ENSACIG00000010985	-	100	97.659	Amphilophus_citrinellus
ENSPREG00000011247	-	100	93.091	ENSACIG00000019949	upf1	100	92.909	Amphilophus_citrinellus
ENSPREG00000011247	-	100	98.002	ENSAOCG00000006352	-	100	98.002	Amphiprion_ocellaris
ENSPREG00000011247	-	100	92.525	ENSAOCG00000018519	upf1	100	92.434	Amphiprion_ocellaris
ENSPREG00000011247	-	100	97.911	ENSAPEG00000006292	-	100	97.911	Amphiprion_percula
ENSPREG00000011247	-	100	92.525	ENSAPEG00000016344	upf1	100	92.434	Amphiprion_percula
ENSPREG00000011247	-	100	97.911	ENSATEG00000016606	-	100	97.911	Anabas_testudineus
ENSPREG00000011247	-	100	91.145	ENSATEG00000017867	upf1	100	91.860	Anabas_testudineus
ENSPREG00000011247	-	95	93.365	ENSAPLG00000009175	UPF1	100	93.365	Anas_platyrhynchos
ENSPREG00000011247	-	95	92.110	ENSANAG00000024107	UPF1	95	92.110	Aotus_nancymaae
ENSPREG00000011247	-	100	93.091	ENSACLG00000007181	upf1	100	92.909	Astatotilapia_calliptera
ENSPREG00000011247	-	100	97.822	ENSACLG00000022630	-	100	97.822	Astatotilapia_calliptera
ENSPREG00000011247	-	100	93.659	ENSAMXG00000042187	upf1	100	93.472	Astyanax_mexicanus
ENSPREG00000011247	-	100	91.401	ENSBTAG00000020922	UPF1	100	91.489	Bos_taurus
ENSPREG00000011247	-	97	49.677	WBGene00004880	smg-2	99	49.493	Caenorhabditis_elegans
ENSPREG00000011247	-	100	91.158	ENSCJAG00000019627	UPF1	100	91.247	Callithrix_jacchus
ENSPREG00000011247	-	100	91.158	ENSCAFG00000014578	UPF1	100	91.247	Canis_familiaris
ENSPREG00000011247	-	100	92.054	ENSCAFG00020012347	UPF1	100	92.143	Canis_lupus_dingo
ENSPREG00000011247	-	100	92.301	ENSCHIG00000011018	UPF1	100	92.390	Capra_hircus
ENSPREG00000011247	-	95	93.251	ENSTSYG00000008877	UPF1	98	93.251	Carlito_syrichta
ENSPREG00000011247	-	96	92.575	ENSCAPG00000005758	UPF1	95	92.681	Cavia_aperea
ENSPREG00000011247	-	100	92.266	ENSCPOG00000025463	UPF1	100	91.817	Cavia_porcellus
ENSPREG00000011247	-	100	92.054	ENSCCAG00000032175	UPF1	100	92.143	Cebus_capucinus
ENSPREG00000011247	-	94	93.696	ENSCATG00000040306	UPF1	97	93.696	Cercocebus_atys
ENSPREG00000011247	-	95	93.441	ENSCLAG00000004037	UPF1	99	92.966	Chinchilla_lanigera
ENSPREG00000011247	-	100	92.054	ENSCSAG00000005276	UPF1	100	92.143	Chlorocebus_sabaeus
ENSPREG00000011247	-	100	92.197	ENSCPBG00000012513	UPF1	100	92.101	Chrysemys_picta_bellii
ENSPREG00000011247	-	77	79.508	ENSCING00000021399	-	99	78.429	Ciona_intestinalis
ENSPREG00000011247	-	99	73.219	ENSCSAVG00000006533	-	99	73.129	Ciona_savignyi
ENSPREG00000011247	-	95	93.441	ENSCANG00000029819	UPF1	97	93.441	Colobus_angolensis_palliatus
ENSPREG00000011247	-	100	91.839	ENSCGRG00001021067	Upf1	100	91.480	Cricetulus_griseus_chok1gshd
ENSPREG00000011247	-	95	92.776	ENSCGRG00000013480	Upf1	98	92.300	Cricetulus_griseus_crigri
ENSPREG00000011247	-	100	97.543	ENSCSEG00000016159	-	100	97.543	Cynoglossus_semilaevis
ENSPREG00000011247	-	100	87.989	ENSCSEG00000017239	upf1	100	88.011	Cynoglossus_semilaevis
ENSPREG00000011247	-	100	99.001	ENSCVAG00000010561	upf1	100	99.001	Cyprinodon_variegatus
ENSPREG00000011247	-	100	93.019	ENSDARG00000016302	upf1	100	93.291	Danio_rerio
ENSPREG00000011247	-	95	90.875	ENSDORG00000009984	Upf1	95	90.399	Dipodomys_ordii
ENSPREG00000011247	-	86	71.609	FBgn0030354	Upf1	81	71.058	Drosophila_melanogaster
ENSPREG00000011247	-	55	86.281	ENSEBUG00000010069	upf1	96	86.612	Eptatretus_burgeri
ENSPREG00000011247	-	100	92.211	ENSEASG00005006549	UPF1	100	92.301	Equus_asinus_asinus
ENSPREG00000011247	-	100	92.211	ENSECAG00000010639	UPF1	100	92.301	Equus_caballus
ENSPREG00000011247	-	100	92.329	ENSELUG00000020917	upf1	100	91.877	Esox_lucius
ENSPREG00000011247	-	100	94.229	ENSELUG00000012916	-	100	94.319	Esox_lucius
ENSPREG00000011247	-	100	91.070	ENSFCAG00000009757	UPF1	100	91.158	Felis_catus
ENSPREG00000011247	-	95	93.994	ENSFALG00000009312	UPF1	96	93.893	Ficedula_albicollis
ENSPREG00000011247	-	95	93.346	ENSFDAG00000014816	UPF1	99	92.871	Fukomys_damarensis
ENSPREG00000011247	-	86	99.002	ENSFHEG00000016276	-	96	99.002	Fundulus_heteroclitus
ENSPREG00000011247	-	100	89.167	ENSFHEG00000006428	upf1	100	88.899	Fundulus_heteroclitus
ENSPREG00000011247	-	100	94.500	ENSGMOG00000007541	upf1	100	94.775	Gadus_morhua
ENSPREG00000011247	-	100	92.039	ENSGALG00000003220	UPF1	100	91.950	Gallus_gallus
ENSPREG00000011247	-	63	94.524	ENSGAFG00000015443	-	85	94.524	Gambusia_affinis
ENSPREG00000011247	-	100	99.635	ENSGAFG00000004831	upf1	100	99.635	Gambusia_affinis
ENSPREG00000011247	-	100	92.606	ENSGAGG00000022217	UPF1	100	92.696	Gopherus_agassizii
ENSPREG00000011247	-	95	94.428	ENSGGOG00000002608	UPF1	99	94.428	Gorilla_gorilla
ENSPREG00000011247	-	91	83.696	ENSHBUG00000014694	upf1	100	84.444	Haplochromis_burtoni
ENSPREG00000011247	-	87	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSPREG00000011247	-	100	90.893	ENSHGLG00000010900	UPF1	100	90.981	Heterocephalus_glaber_female
ENSPREG00000011247	-	95	91.540	ENSHGLG00100005904	UPF1	96	91.540	Heterocephalus_glaber_male
ENSPREG00000011247	-	100	97.364	ENSHCOG00000008918	upf1	100	97.364	Hippocampus_comes
ENSPREG00000011247	-	100	93.659	ENSIPUG00000005108	UPF1	100	93.472	Ictalurus_punctatus
ENSPREG00000011247	-	100	92.054	ENSSTOG00000009196	UPF1	100	91.696	Ictidomys_tridecemlineatus
ENSPREG00000011247	-	100	91.103	ENSJJAG00000023151	Upf1	100	90.747	Jaculus_jaculus
ENSPREG00000011247	-	100	98.547	ENSKMAG00000004962	upf1	100	98.547	Kryptolebias_marmoratus
ENSPREG00000011247	-	100	97.278	ENSLBEG00000027848	-	100	97.278	Labrus_bergylta
ENSPREG00000011247	-	100	91.219	ENSLBEG00000014862	upf1	100	91.398	Labrus_bergylta
ENSPREG00000011247	-	63	94.413	ENSLACG00000008482	UPF1	100	94.413	Latimeria_chalumnae
ENSPREG00000011247	-	100	95.005	ENSLOCG00000002072	upf1	100	95.005	Lepisosteus_oculatus
ENSPREG00000011247	-	100	90.700	ENSLAFG00000014963	UPF1	100	90.788	Loxodonta_africana
ENSPREG00000011247	-	100	91.808	ENSMFAG00000037748	UPF1	100	91.897	Macaca_fascicularis
ENSPREG00000011247	-	100	91.563	ENSMMUG00000023286	UPF1	100	91.652	Macaca_mulatta
ENSPREG00000011247	-	100	91.808	ENSMNEG00000000046	UPF1	100	91.897	Macaca_nemestrina
ENSPREG00000011247	-	95	93.441	ENSMLEG00000028404	UPF1	99	93.441	Mandrillus_leucophaeus
ENSPREG00000011247	-	100	91.592	ENSMAMG00000006229	upf1	100	92.308	Mastacembelus_armatus
ENSPREG00000011247	-	100	97.368	ENSMAMG00000006231	-	100	97.368	Mastacembelus_armatus
ENSPREG00000011247	-	100	97.822	ENSMZEG00005016386	-	100	97.822	Maylandia_zebra
ENSPREG00000011247	-	100	91.846	ENSMZEG00005003489	upf1	100	92.183	Maylandia_zebra
ENSPREG00000011247	-	95	92.972	ENSMGAG00000004745	UPF1	100	92.972	Meleagris_gallopavo
ENSPREG00000011247	-	95	92.776	ENSMAUG00000011398	Upf1	95	92.300	Mesocricetus_auratus
ENSPREG00000011247	-	100	91.964	ENSMICG00000001659	UPF1	100	92.054	Microcebus_murinus
ENSPREG00000011247	-	100	90.941	ENSMOCG00000005699	Upf1	100	90.675	Microtus_ochrogaster
ENSPREG00000011247	-	95	95.598	ENSMMOG00000007537	-	99	95.598	Mola_mola
ENSPREG00000011247	-	100	92.160	ENSMMOG00000007881	upf1	100	92.441	Mola_mola
ENSPREG00000011247	-	100	90.917	ENSMODG00000003689	UPF1	100	91.093	Monodelphis_domestica
ENSPREG00000011247	-	100	92.252	ENSMALG00000000144	upf1	100	92.434	Monopterus_albus
ENSPREG00000011247	-	100	95.928	ENSMALG00000018100	-	100	95.928	Monopterus_albus
ENSPREG00000011247	-	100	91.749	MGP_CAROLIEiJ_G0031142	Upf1	100	91.390	Mus_caroli
ENSPREG00000011247	-	100	91.749	ENSMUSG00000058301	Upf1	100	91.390	Mus_musculus
ENSPREG00000011247	-	100	91.749	MGP_PahariEiJ_G0021607	Upf1	100	91.390	Mus_pahari
ENSPREG00000011247	-	100	91.749	MGP_SPRETEiJ_G0032260	Upf1	100	91.390	Mus_spretus
ENSPREG00000011247	-	100	92.054	ENSMPUG00000015516	UPF1	100	92.143	Mustela_putorius_furo
ENSPREG00000011247	-	99	91.846	ENSMLUG00000012122	UPF1	99	91.935	Myotis_lucifugus
ENSPREG00000011247	-	100	90.611	ENSNGAG00000024107	Upf1	100	90.257	Nannospalax_galili
ENSPREG00000011247	-	100	91.273	ENSNBRG00000000670	upf1	100	91.091	Neolamprologus_brichardi
ENSPREG00000011247	-	100	94.226	ENSNBRG00000022069	-	100	96.893	Neolamprologus_brichardi
ENSPREG00000011247	-	95	87.643	ENSNLEG00000006062	UPF1	99	87.643	Nomascus_leucogenys
ENSPREG00000011247	-	83	88.650	ENSMEUG00000014146	-	83	88.650	Notamacropus_eugenii
ENSPREG00000011247	-	95	87.224	ENSOPRG00000014018	UPF1	99	86.936	Ochotona_princeps
ENSPREG00000011247	-	100	92.439	ENSODEG00000012426	UPF1	100	91.989	Octodon_degus
ENSPREG00000011247	-	100	97.913	ENSONIG00000012729	-	100	97.913	Oreochromis_niloticus
ENSPREG00000011247	-	100	92.025	ENSONIG00000010452	upf1	100	92.363	Oreochromis_niloticus
ENSPREG00000011247	-	100	91.312	ENSOANG00000004568	UPF1	100	91.223	Ornithorhynchus_anatinus
ENSPREG00000011247	-	100	97.366	ENSORLG00000008453	upf1	100	97.366	Oryzias_latipes
ENSPREG00000011247	-	100	97.278	ENSORLG00020014758	upf1	100	97.278	Oryzias_latipes_hni
ENSPREG00000011247	-	100	97.278	ENSORLG00015010165	upf1	100	97.278	Oryzias_latipes_hsok
ENSPREG00000011247	-	100	97.639	ENSOMEG00000003665	upf1	100	97.639	Oryzias_melastigma
ENSPREG00000011247	-	100	92.143	ENSOGAG00000012866	UPF1	100	92.232	Otolemur_garnettii
ENSPREG00000011247	-	96	90.340	ENSOARG00000010739	UPF1	100	90.156	Ovis_aries
ENSPREG00000011247	-	95	93.277	ENSPPAG00000043884	UPF1	96	93.277	Pan_paniscus
ENSPREG00000011247	-	100	91.070	ENSPPRG00000023470	UPF1	100	91.158	Panthera_pardus
ENSPREG00000011247	-	95	92.042	ENSPTIG00000010159	UPF1	99	92.042	Panthera_tigris_altaica
ENSPREG00000011247	-	100	91.808	ENSPTRG00000010721	UPF1	100	91.897	Pan_troglodytes
ENSPREG00000011247	-	100	91.808	ENSPANG00000008847	UPF1	100	91.897	Papio_anubis
ENSPREG00000011247	-	92	94.571	ENSPKIG00000006069	upf1	95	95.770	Paramormyrops_kingsleyae
ENSPREG00000011247	-	70	93.081	ENSPSIG00000009491	UPF1	100	93.081	Pelodiscus_sinensis
ENSPREG00000011247	-	100	90.679	ENSPMGG00000017327	upf1	100	90.588	Periophthalmus_magnuspinnatus
ENSPREG00000011247	-	100	90.941	ENSPEMG00000001085	Upf1	100	90.586	Peromyscus_maniculatus_bairdii
ENSPREG00000011247	-	100	87.805	ENSPMAG00000001206	upf1	100	87.805	Petromyzon_marinus
ENSPREG00000011247	-	100	92.315	ENSPCIG00000006156	UPF1	100	92.404	Phascolarctos_cinereus
ENSPREG00000011247	-	100	90.819	ENSPLAG00000018155	-	100	90.189	Poecilia_latipinna
ENSPREG00000011247	-	100	99.727	ENSPLAG00000016232	-	100	99.727	Poecilia_latipinna
ENSPREG00000011247	-	100	99.636	ENSPMEG00000016319	-	100	99.636	Poecilia_mexicana
ENSPREG00000011247	-	100	91.387	ENSPMEG00000011443	-	100	91.348	Poecilia_mexicana
ENSPREG00000011247	-	100	86.295	ENSPPYG00000009752	UPF1	100	85.841	Pongo_abelii
ENSPREG00000011247	-	75	98.653	ENSPCAG00000012962	UPF1	76	98.653	Procavia_capensis
ENSPREG00000011247	-	100	91.556	ENSPCOG00000023813	UPF1	100	91.644	Propithecus_coquereli
ENSPREG00000011247	-	68	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSPREG00000011247	-	100	91.846	ENSPNYG00000003694	upf1	100	92.183	Pundamilia_nyererei
ENSPREG00000011247	-	100	97.822	ENSPNYG00000016731	-	100	97.822	Pundamilia_nyererei
ENSPREG00000011247	-	100	93.388	ENSPNAG00000025614	upf1	100	93.200	Pygocentrus_nattereri
ENSPREG00000011247	-	100	91.749	ENSRNOG00000020134	Upf1	100	91.390	Rattus_norvegicus
ENSPREG00000011247	-	95	91.065	ENSRBIG00000013894	UPF1	98	94.311	Rhinopithecus_bieti
ENSPREG00000011247	-	95	93.441	ENSRROG00000040935	UPF1	98	94.311	Rhinopithecus_roxellana
ENSPREG00000011247	-	73	57.822	YMR080C	NAM7	84	57.038	Saccharomyces_cerevisiae
ENSPREG00000011247	-	94	93.696	ENSSBOG00000023632	UPF1	96	93.696	Saimiri_boliviensis_boliviensis
ENSPREG00000011247	-	95	93.359	ENSSHAG00000010499	UPF1	100	93.359	Sarcophilus_harrisii
ENSPREG00000011247	-	100	94.828	ENSSFOG00015021095	upf1	100	94.828	Scleropages_formosus
ENSPREG00000011247	-	100	97.731	ENSSMAG00000021018	-	100	97.731	Scophthalmus_maximus
ENSPREG00000011247	-	100	90.950	ENSSMAG00000005055	upf1	100	91.577	Scophthalmus_maximus
ENSPREG00000011247	-	100	97.913	ENSSDUG00000009629	-	100	97.913	Seriola_dumerili
ENSPREG00000011247	-	100	91.324	ENSSDUG00000013320	upf1	100	92.218	Seriola_dumerili
ENSPREG00000011247	-	100	97.913	ENSSLDG00000006878	-	100	97.913	Seriola_lalandi_dorsalis
ENSPREG00000011247	-	100	92.148	ENSSLDG00000020868	upf1	100	92.690	Seriola_lalandi_dorsalis
ENSPREG00000011247	-	100	92.439	ENSSPUG00000010538	UPF1	100	92.529	Sphenodon_punctatus
ENSPREG00000011247	-	100	90.446	ENSSPAG00000000003	upf1	100	90.719	Stegastes_partitus
ENSPREG00000011247	-	100	98.000	ENSSPAG00000011521	-	100	98.000	Stegastes_partitus
ENSPREG00000011247	-	100	92.211	ENSSSCG00000039301	UPF1	99	94.151	Sus_scrofa
ENSPREG00000011247	-	83	86.489	ENSTGUG00000001057	UPF1	100	90.533	Taeniopygia_guttata
ENSPREG00000011247	-	100	92.441	ENSTRUG00000000150	upf1	100	92.441	Takifugu_rubripes
ENSPREG00000011247	-	100	96.815	ENSTRUG00000005131	-	100	96.815	Takifugu_rubripes
ENSPREG00000011247	-	100	88.720	ENSTTRG00000011544	UPF1	100	88.720	Tursiops_truncatus
ENSPREG00000011247	-	100	91.964	ENSUAMG00000007093	UPF1	100	92.054	Ursus_americanus
ENSPREG00000011247	-	95	94.151	ENSUMAG00000006652	UPF1	99	94.819	Ursus_maritimus
ENSPREG00000011247	-	100	92.054	ENSVVUG00000007797	UPF1	100	92.143	Vulpes_vulpes
ENSPREG00000011247	-	100	79.471	ENSXETG00000013602	upf1	100	79.471	Xenopus_tropicalis
ENSPREG00000011247	-	94	99.514	ENSXCOG00000005764	-	100	99.514	Xiphophorus_couchianus
ENSPREG00000011247	-	97	91.509	ENSXCOG00000015275	-	96	91.321	Xiphophorus_couchianus
ENSPREG00000011247	-	100	91.705	ENSXMAG00000001703	-	100	91.522	Xiphophorus_maculatus
ENSPREG00000011247	-	100	99.454	ENSXMAG00000002540	-	100	99.454	Xiphophorus_maculatus