EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPREG00000011290 (Gene tree)
Gene ID: 103463330
Gene Symbol: lsm4
Alias: zgc:73057|zgc:77848
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Plus strand
Length: 2096 bases
Position: chrLG4:11671832-11673927
Accession: 103463330
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000016701	LSM	PF01423.22	1.8e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000016881	-	567	XM_008406614	ENSPREP00000016701	188 (aa)	XP_008404836	UPI0004A2E530

Gene Model

Click here to download ENSPREG00000011290's gene model file

Pathways

Pathway ID	Pathway Name	Source
pret03018	RNA degradation	KEGG
pret03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000011290's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPREG00000011290	lsm4	60	31.624	ENSPREG00000007532	snrpd3l	85	32.381
ENSPREG00000011290	lsm4	53	30.693	ENSPREG00000009899	oscp1a	61	32.099
ENSPREG00000011290	lsm4	52	32.000	ENSPREG00000016534	si:ch73-14h10.2	100	32.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000011290	lsm4	76	88.742	ENSAPOG00000005643	lsm4	100	88.742	Acanthochromis_polyacanthus
ENSPREG00000011290	lsm4	76	90.541	ENSAOCG00000006414	lsm4	100	90.541	Amphiprion_ocellaris
ENSPREG00000011290	lsm4	76	89.933	ENSAPEG00000006238	lsm4	100	89.933	Amphiprion_percula
ENSPREG00000011290	lsm4	76	88.816	ENSATEG00000016559	lsm4	100	88.816	Anabas_testudineus
ENSPREG00000011290	lsm4	76	90.476	ENSACLG00000022738	lsm4	100	90.476	Astatotilapia_calliptera
ENSPREG00000011290	lsm4	76	88.889	ENSAMXG00000016932	lsm4	100	88.889	Astyanax_mexicanus
ENSPREG00000011290	lsm4	76	83.217	ENSCSEG00000016127	lsm4	100	93.706	Cynoglossus_semilaevis
ENSPREG00000011290	lsm4	68	95.312	ENSCVAG00000021828	lsm4	98	95.312	Cyprinodon_variegatus
ENSPREG00000011290	lsm4	76	95.804	ENSCVAG00000010601	lsm4	100	95.804	Cyprinodon_variegatus
ENSPREG00000011290	lsm4	73	86.111	ENSDARG00000023852	lsm4	99	84.722	Danio_rerio
ENSPREG00000011290	lsm4	53	81.000	FBgn0032240	CG17768	63	81.443	Drosophila_melanogaster
ENSPREG00000011290	lsm4	66	94.400	ENSELUG00000012821	lsm4	95	94.400	Esox_lucius
ENSPREG00000011290	lsm4	76	81.633	ENSGMOG00000007729	lsm4	99	79.054	Gadus_morhua
ENSPREG00000011290	lsm4	100	93.085	ENSGAFG00000004903	lsm4	100	93.085	Gambusia_affinis
ENSPREG00000011290	lsm4	76	84.000	ENSGACG00000008140	lsm4	100	86.000	Gasterosteus_aculeatus
ENSPREG00000011290	lsm4	90	80.682	ENSHBUG00000008858	lsm4	96	80.682	Haplochromis_burtoni
ENSPREG00000011290	lsm4	76	95.804	ENSHCOG00000008819	lsm4	100	95.804	Hippocampus_comes
ENSPREG00000011290	lsm4	76	89.583	ENSIPUG00000005368	Lsm4	100	89.583	Ictalurus_punctatus
ENSPREG00000011290	lsm4	76	93.750	ENSKMAG00000005073	lsm4	100	93.750	Kryptolebias_marmoratus
ENSPREG00000011290	lsm4	76	89.933	ENSLBEG00000027930	lsm4	100	89.933	Labrus_bergylta
ENSPREG00000011290	lsm4	54	97.030	ENSLOCG00000002025	lsm4	100	86.111	Lepisosteus_oculatus
ENSPREG00000011290	lsm4	76	93.007	ENSMAMG00000006190	lsm4	100	93.007	Mastacembelus_armatus
ENSPREG00000011290	lsm4	76	91.096	ENSMZEG00005016420	lsm4	100	91.096	Maylandia_zebra
ENSPREG00000011290	lsm4	71	78.676	ENSMGAG00000004976	LSM4	71	97.959	Meleagris_gallopavo
ENSPREG00000011290	lsm4	53	95.960	ENSMICG00000000222	LSM4	99	76.087	Microcebus_murinus
ENSPREG00000011290	lsm4	76	92.308	ENSMALG00000018159	lsm4	100	92.308	Monopterus_albus
ENSPREG00000011290	lsm4	61	87.719	ENSNBRG00000022150	lsm4	70	87.719	Neolamprologus_brichardi
ENSPREG00000011290	lsm4	73	61.429	ENSODEG00000011712	-	70	60.215	Octodon_degus
ENSPREG00000011290	lsm4	76	90.476	ENSONIG00000012724	lsm4	100	90.476	Oreochromis_niloticus
ENSPREG00000011290	lsm4	76	93.750	ENSORLG00000008391	lsm4	100	93.750	Oryzias_latipes
ENSPREG00000011290	lsm4	76	93.056	ENSORLG00020014829	lsm4	100	93.056	Oryzias_latipes_hni
ENSPREG00000011290	lsm4	76	92.361	ENSORLG00015010205	lsm4	100	92.361	Oryzias_latipes_hsok
ENSPREG00000011290	lsm4	76	94.444	ENSOMEG00000003606	lsm4	100	94.444	Oryzias_melastigma
ENSPREG00000011290	lsm4	52	95.918	ENSOGAG00000027992	LSM4	67	95.918	Otolemur_garnettii
ENSPREG00000011290	lsm4	76	88.889	ENSPKIG00000006154	lsm4	100	88.889	Paramormyrops_kingsleyae
ENSPREG00000011290	lsm4	100	97.340	ENSPFOG00000000570	lsm4	100	97.340	Poecilia_formosa
ENSPREG00000011290	lsm4	76	99.301	ENSPLAG00000016267	lsm4	100	99.301	Poecilia_latipinna
ENSPREG00000011290	lsm4	76	99.301	ENSPMEG00000016378	lsm4	100	99.301	Poecilia_mexicana
ENSPREG00000011290	lsm4	53	95.960	ENSPCOG00000019837	LSM4	99	76.087	Propithecus_coquereli
ENSPREG00000011290	lsm4	76	91.096	ENSPNYG00000016794	lsm4	100	91.096	Pundamilia_nyererei
ENSPREG00000011290	lsm4	72	91.176	ENSPNAG00000016598	lsm4	100	91.176	Pygocentrus_nattereri
ENSPREG00000011290	lsm4	76	90.278	ENSSFOG00015021067	lsm4	100	90.278	Scleropages_formosus
ENSPREG00000011290	lsm4	76	76.000	ENSSMAG00000021020	lsm4	100	86.000	Scophthalmus_maximus
ENSPREG00000011290	lsm4	76	80.838	ENSSDUG00000009588	lsm4	100	80.838	Seriola_dumerili
ENSPREG00000011290	lsm4	76	80.357	ENSSLDG00000006827	lsm4	100	80.357	Seriola_lalandi_dorsalis
ENSPREG00000011290	lsm4	76	88.742	ENSSPAG00000011615	lsm4	100	88.742	Stegastes_partitus
ENSPREG00000011290	lsm4	76	92.308	ENSTRUG00000021737	lsm4	100	92.308	Takifugu_rubripes
ENSPREG00000011290	lsm4	76	88.889	ENSTNIG00000010191	lsm4	100	90.972	Tetraodon_nigroviridis
ENSPREG00000011290	lsm4	52	96.939	ENSXETG00000024933	lsm4	99	87.050	Xenopus_tropicalis
ENSPREG00000011290	lsm4	100	93.085	ENSXMAG00000026672	lsm4	100	93.085	Xiphophorus_maculatus