EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPREG00000011327 (Gene tree)
Gene ID: -
Gene Symbol: prdm1b
Alias: -
Full Name: PR domain zinc finger protein 1-like
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Plus strand
Length: 11572 bases
Position: chrLG11:28783117-28794688
Accession: 103473100
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000016800	zf-C2H2	PF00096.26	1e-18	1	3
ENSPREP00000016800	zf-C2H2	PF00096.26	1e-18	2	3
ENSPREP00000016800	zf-C2H2	PF00096.26	1e-18	3	3
ENSPREP00000016788	zf-C2H2	PF00096.26	3e-18	1	3
ENSPREP00000016788	zf-C2H2	PF00096.26	3e-18	2	3
ENSPREP00000016788	zf-C2H2	PF00096.26	3e-18	3	3
ENSPREP00000016800	zf-met	PF12874.7	1.1e-06	1	1
ENSPREP00000016788	zf-met	PF12874.7	3.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000016968	-	2277	XM_008423057	ENSPREP00000016788	758 (aa)	XP_008421279	-
ENSPRET00000016980	-	1896	-	ENSPREP00000016800	631 (aa)	-	-

Gene Model

Click here to download ENSPREG00000011327's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000011327's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000011327	prdm1b	95	37.004	ENSAPOG00000014135	-	64	57.738	Acanthochromis_polyacanthus
ENSPREG00000011327	prdm1b	69	72.082	ENSAPOG00000022084	prdm1b	93	72.769	Acanthochromis_polyacanthus
ENSPREG00000011327	prdm1b	96	77.905	ENSACIG00000014426	prdm1b	97	77.905	Amphilophus_citrinellus
ENSPREG00000011327	prdm1b	56	60.563	ENSACIG00000009747	-	91	39.252	Amphilophus_citrinellus
ENSPREG00000011327	prdm1b	93	74.194	ENSAOCG00000002230	prdm1b	98	74.533	Amphiprion_ocellaris
ENSPREG00000011327	prdm1b	99	72.843	ENSAPEG00000019826	prdm1b	99	73.120	Amphiprion_percula
ENSPREG00000011327	prdm1b	94	39.164	ENSATEG00000014034	-	95	39.164	Anabas_testudineus
ENSPREG00000011327	prdm1b	99	79.430	ENSATEG00000006924	prdm1b	99	79.905	Anabas_testudineus
ENSPREG00000011327	prdm1b	67	61.111	ENSATEG00000021017	prdm1a	70	55.682	Anabas_testudineus
ENSPREG00000011327	prdm1b	92	81.399	ENSACLG00000005487	prdm1b	89	81.399	Astatotilapia_calliptera
ENSPREG00000011327	prdm1b	67	58.333	ENSCSEG00000009707	prdm1a	72	53.107	Cynoglossus_semilaevis
ENSPREG00000011327	prdm1b	54	61.111	ENSCVAG00000019081	prdm1a	58	61.111	Cyprinodon_variegatus
ENSPREG00000011327	prdm1b	99	82.698	ENSCVAG00000016746	prdm1b	99	82.989	Cyprinodon_variegatus
ENSPREG00000011327	prdm1b	99	85.783	ENSFHEG00000019848	prdm1b	99	85.783	Fundulus_heteroclitus
ENSPREG00000011327	prdm1b	86	40.171	ENSGAFG00000013012	-	89	40.171	Gambusia_affinis
ENSPREG00000011327	prdm1b	96	93.570	ENSGAFG00000016191	prdm1b	98	93.570	Gambusia_affinis
ENSPREG00000011327	prdm1b	91	70.098	ENSGACG00000002716	prdm1b	100	69.136	Gasterosteus_aculeatus
ENSPREG00000011327	prdm1b	92	81.538	ENSHBUG00000001475	prdm1b	95	81.538	Haplochromis_burtoni
ENSPREG00000011327	prdm1b	99	71.451	ENSHCOG00000003617	prdm1b	99	71.451	Hippocampus_comes
ENSPREG00000011327	prdm1b	88	55.897	ENSIPUG00000013740	prdm1b	94	55.233	Ictalurus_punctatus
ENSPREG00000011327	prdm1b	52	62.500	ENSKMAG00000017597	prdm1a	88	42.308	Kryptolebias_marmoratus
ENSPREG00000011327	prdm1b	91	76.091	ENSKMAG00000011218	prdm1b	90	76.091	Kryptolebias_marmoratus
ENSPREG00000011327	prdm1b	86	41.477	ENSKMAG00000016247	-	87	41.477	Kryptolebias_marmoratus
ENSPREG00000011327	prdm1b	99	79.811	ENSLBEG00000020955	prdm1b	99	79.811	Labrus_bergylta
ENSPREG00000011327	prdm1b	79	79.167	ENSLOCG00000004978	prdm1b	99	51.368	Lepisosteus_oculatus
ENSPREG00000011327	prdm1b	99	79.206	ENSMZEG00005026361	prdm1b	94	79.206	Maylandia_zebra
ENSPREG00000011327	prdm1b	93	78.824	ENSMMOG00000013458	prdm1b	96	78.824	Mola_mola
ENSPREG00000011327	prdm1b	52	61.972	ENSMALG00000000462	-	54	56.442	Monopterus_albus
ENSPREG00000011327	prdm1b	97	74.839	ENSMALG00000011410	prdm1b	99	75.161	Monopterus_albus
ENSPREG00000011327	prdm1b	78	87.151	ENSONIG00000013583	prdm1b	83	89.157	Oreochromis_niloticus
ENSPREG00000011327	prdm1b	98	67.712	ENSORLG00000010025	prdm1b	99	67.981	Oryzias_latipes
ENSPREG00000011327	prdm1b	90	70.238	ENSORLG00015009022	prdm1b	93	68.896	Oryzias_latipes_hsok
ENSPREG00000011327	prdm1b	80	69.613	ENSPKIG00000022335	prdm1b	97	50.272	Paramormyrops_kingsleyae
ENSPREG00000011327	prdm1b	86	87.275	ENSPFOG00000003103	prdm1b	100	87.275	Poecilia_formosa
ENSPREG00000011327	prdm1b	99	96.372	ENSPLAG00000018491	prdm1b	99	96.372	Poecilia_latipinna
ENSPREG00000011327	prdm1b	99	97.003	ENSPMEG00000007869	prdm1b	99	97.003	Poecilia_mexicana
ENSPREG00000011327	prdm1b	74	66.667	ENSPVAG00000011732	PRDM1	75	58.140	Pteropus_vampyrus
ENSPREG00000011327	prdm1b	62	61.111	ENSPNAG00000028442	prdm1a	71	53.403	Pygocentrus_nattereri
ENSPREG00000011327	prdm1b	90	59.646	ENSSFOG00015021896	prdm1b	92	58.222	Scleropages_formosus
ENSPREG00000011327	prdm1b	99	77.725	ENSSMAG00000020467	prdm1b	99	78.069	Scophthalmus_maximus
ENSPREG00000011327	prdm1b	54	63.514	ENSSMAG00000017518	-	55	53.216	Scophthalmus_maximus
ENSPREG00000011327	prdm1b	99	81.329	ENSSDUG00000020610	prdm1b	99	81.329	Seriola_dumerili
ENSPREG00000011327	prdm1b	99	81.359	ENSSLDG00000021973	prdm1b	99	80.614	Seriola_lalandi_dorsalis
ENSPREG00000011327	prdm1b	52	64.789	ENSSLDG00000001957	-	53	55.357	Seriola_lalandi_dorsalis
ENSPREG00000011327	prdm1b	99	78.662	ENSSPAG00000000803	prdm1b	99	79.140	Stegastes_partitus
ENSPREG00000011327	prdm1b	92	37.519	ENSSPAG00000009830	-	79	37.519	Stegastes_partitus
ENSPREG00000011327	prdm1b	50	70.000	ENSTNIG00000003926	prdm1a	91	40.686	Tetraodon_nigroviridis
ENSPREG00000011327	prdm1b	97	91.553	ENSXCOG00000018920	prdm1b	96	91.792	Xiphophorus_couchianus
ENSPREG00000011327	prdm1b	97	91.826	ENSXMAG00000016765	prdm1b	96	91.826	Xiphophorus_maculatus