EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPREG00000012214 (Gene tree)
Gene ID: -
Gene Symbol: upf3b
Alias: zgc:174674|zgc:66390
Full Name: UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Plus strand
Length: 2307 bases
Position: chrLG10:16734844-16737150
Accession: ZDB-GENE-040426-1630
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000018062	Smg4_UPF3	PF03467.15	2e-41	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000018255	-	450	-	ENSPREP00000018062	149 (aa)	-	-

Gene Model

Click here to download ENSPREG00000012214's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000012214's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPREG00000012214	upf3b	100	59.375	ENSPREG00000005566	upf3a	74	59.722

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000012214	upf3b	95	63.924	ENSG00000125351	UPF3B	71	65.161	Homo_sapiens
ENSPREG00000012214	upf3b	76	73.451	ENSACIG00000020468	upf3a	74	71.429	Amphilophus_citrinellus
ENSPREG00000012214	upf3b	95	65.000	ENSANAG00000021894	-	73	63.924	Aotus_nancymaae
ENSPREG00000012214	upf3b	95	86.014	ENSAMXG00000000199	upf3b	50	84.354	Astyanax_mexicanus
ENSPREG00000012214	upf3b	95	65.000	ENSBTAG00000035615	UPF3B	50	66.242	Bos_taurus
ENSPREG00000012214	upf3b	95	63.291	ENSCJAG00000004975	UPF3B	73	63.291	Callithrix_jacchus
ENSPREG00000012214	upf3b	95	64.375	ENSCHIG00000018011	-	50	65.605	Capra_hircus
ENSPREG00000012214	upf3b	95	64.375	ENSTSYG00000014690	UPF3B	74	58.182	Carlito_syrichta
ENSPREG00000012214	upf3b	95	50.000	ENSCCAG00000029813	-	50	49.677	Cebus_capucinus
ENSPREG00000012214	upf3b	95	63.924	ENSCATG00000017506	UPF3B	73	63.924	Cercocebus_atys
ENSPREG00000012214	upf3b	56	62.651	ENSCLAG00000000093	-	53	64.474	Chinchilla_lanigera
ENSPREG00000012214	upf3b	76	67.257	ENSCPBG00000022854	-	86	67.257	Chrysemys_picta_bellii
ENSPREG00000012214	upf3b	77	48.246	ENSCING00000008396	-	55	52.273	Ciona_intestinalis
ENSPREG00000012214	upf3b	95	62.252	ENSFHEG00000010418	upf3a	55	78.161	Fundulus_heteroclitus
ENSPREG00000012214	upf3b	76	69.912	ENSGALG00000016815	-	72	69.369	Gallus_gallus
ENSPREG00000012214	upf3b	95	88.028	ENSGACG00000017435	upf3b	52	88.028	Gasterosteus_aculeatus
ENSPREG00000012214	upf3b	81	61.983	ENSGAGG00000001952	UPF3A	60	70.476	Gopherus_agassizii
ENSPREG00000012214	upf3b	95	64.557	ENSGGOG00000023995	UPF3B	80	64.557	Gorilla_gorilla
ENSPREG00000012214	upf3b	74	66.667	ENSJJAG00000018099	-	50	67.925	Jaculus_jaculus
ENSPREG00000012214	upf3b	95	63.924	ENSMFAG00000045414	UPF3B	73	63.924	Macaca_fascicularis
ENSPREG00000012214	upf3b	95	57.616	ENSMFAG00000045275	-	68	56.757	Macaca_fascicularis
ENSPREG00000012214	upf3b	95	63.924	ENSMMUG00000020222	UPF3B	73	63.924	Macaca_mulatta
ENSPREG00000012214	upf3b	95	54.305	ENSMMUG00000046682	-	58	60.169	Macaca_mulatta
ENSPREG00000012214	upf3b	95	63.924	ENSMNEG00000039794	UPF3B	73	63.924	Macaca_nemestrina
ENSPREG00000012214	upf3b	95	57.616	ENSMNEG00000040898	-	68	56.757	Macaca_nemestrina
ENSPREG00000012214	upf3b	95	63.924	ENSMLEG00000010999	UPF3B	73	63.924	Mandrillus_leucophaeus
ENSPREG00000012214	upf3b	54	65.432	ENSMICG00000042420	-	54	61.446	Microcebus_murinus
ENSPREG00000012214	upf3b	95	59.574	ENSMALG00000002454	-	60	72.222	Monopterus_albus
ENSPREG00000012214	upf3b	97	90.972	ENSNBRG00000011560	upf3b	96	92.199	Neolamprologus_brichardi
ENSPREG00000012214	upf3b	81	75.000	ENSNLEG00000014897	UPF3B	58	77.064	Nomascus_leucogenys
ENSPREG00000012214	upf3b	95	53.086	ENSODEG00000007164	-	63	52.817	Octodon_degus
ENSPREG00000012214	upf3b	95	57.042	ENSODEG00000006064	-	68	52.817	Octodon_degus
ENSPREG00000012214	upf3b	95	64.557	ENSPPAG00000040390	UPF3B	80	64.557	Pan_paniscus
ENSPREG00000012214	upf3b	95	64.557	ENSPTRG00000022228	UPF3B	80	64.557	Pan_troglodytes
ENSPREG00000012214	upf3b	95	63.924	ENSPANG00000000900	UPF3B	73	63.924	Papio_anubis
ENSPREG00000012214	upf3b	95	56.000	ENSPANG00000029350	-	57	60.169	Papio_anubis
ENSPREG00000012214	upf3b	97	82.432	ENSPKIG00000019226	upf3b	98	80.921	Paramormyrops_kingsleyae
ENSPREG00000012214	upf3b	95	88.028	ENSPMGG00000016067	upf3b	52	88.028	Periophthalmus_magnuspinnatus
ENSPREG00000012214	upf3b	99	60.377	ENSPLAG00000011960	upf3a	73	60.839	Poecilia_latipinna
ENSPREG00000012214	upf3b	95	63.924	ENSRROG00000041031	UPF3B	73	63.924	Rhinopithecus_roxellana
ENSPREG00000012214	upf3b	95	63.924	ENSSBOG00000019740	UPF3B	75	62.658	Saimiri_boliviensis_boliviensis
ENSPREG00000012214	upf3b	99	59.333	ENSSMAG00000003858	upf3a	76	70.175	Scophthalmus_maximus
ENSPREG00000012214	upf3b	76	73.451	ENSSDUG00000009680	upf3a	64	73.333	Seriola_dumerili
ENSPREG00000012214	upf3b	95	63.924	ENSVVUG00000011594	UPF3B	73	63.924	Vulpes_vulpes
ENSPREG00000012214	upf3b	95	69.231	ENSXETG00000007440	upf3b	62	76.224	Xenopus_tropicalis
ENSPREG00000012214	upf3b	100	98.658	ENSXCOG00000016586	upf3b	100	98.658	Xiphophorus_couchianus