EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPREG00000012279 (Gene tree)
Gene ID: 103476777
Gene Symbol: smndc1
Alias: TDRD10|spf30|wu:fb37h07|wu:fc23a07
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Plus strand
Length: 3749 bases
Position: chrLG15:13267479-13271227
Accession: 103476777
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000018134	SMN	PF06003.12	2e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000018331	-	724	XM_008429349	ENSPREP00000018134	238 (aa)	XP_008427571	UPI0004A46F1A

Gene Model

Click here to download ENSPREG00000012279's gene model file

Pathways

Pathway ID	Pathway Name	Source
pret03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000012279's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000012279	smndc1	100	75.210	ENSG00000119953	SMNDC1	100	75.210	Homo_sapiens
ENSPREG00000012279	smndc1	100	89.496	ENSAPOG00000021772	smndc1	100	89.496	Acanthochromis_polyacanthus
ENSPREG00000012279	smndc1	100	75.210	ENSAMEG00000005251	SMNDC1	100	75.210	Ailuropoda_melanoleuca
ENSPREG00000012279	smndc1	100	88.235	ENSACIG00000004819	smndc1	100	88.235	Amphilophus_citrinellus
ENSPREG00000012279	smndc1	100	89.076	ENSAOCG00000017869	smndc1	100	89.076	Amphiprion_ocellaris
ENSPREG00000012279	smndc1	100	89.076	ENSAPEG00000007752	smndc1	100	89.076	Amphiprion_percula
ENSPREG00000012279	smndc1	100	89.916	ENSATEG00000006830	smndc1	100	89.916	Anabas_testudineus
ENSPREG00000012279	smndc1	83	75.758	ENSAPLG00000004322	SMNDC1	100	75.758	Anas_platyrhynchos
ENSPREG00000012279	smndc1	100	76.471	ENSACAG00000005983	SMNDC1	100	76.471	Anolis_carolinensis
ENSPREG00000012279	smndc1	100	75.210	ENSANAG00000032875	SMNDC1	100	75.210	Aotus_nancymaae
ENSPREG00000012279	smndc1	100	88.235	ENSACLG00000016360	smndc1	100	88.235	Astatotilapia_calliptera
ENSPREG00000012279	smndc1	100	79.412	ENSAMXG00000020310	smndc1	100	79.412	Astyanax_mexicanus
ENSPREG00000012279	smndc1	100	75.210	ENSBTAG00000000551	SMNDC1	100	75.210	Bos_taurus
ENSPREG00000012279	smndc1	100	75.210	ENSCJAG00000018624	SMNDC1	100	75.210	Callithrix_jacchus
ENSPREG00000012279	smndc1	100	75.210	ENSCAFG00000010720	SMNDC1	100	75.210	Canis_familiaris
ENSPREG00000012279	smndc1	100	75.210	ENSCAFG00020011913	SMNDC1	100	75.210	Canis_lupus_dingo
ENSPREG00000012279	smndc1	100	75.210	ENSCHIG00000010604	SMNDC1	100	75.210	Capra_hircus
ENSPREG00000012279	smndc1	100	75.210	ENSTSYG00000026454	SMNDC1	100	75.210	Carlito_syrichta
ENSPREG00000012279	smndc1	100	61.667	ENSCAPG00000009132	SMNDC1	100	71.642	Cavia_aperea
ENSPREG00000012279	smndc1	100	75.210	ENSCPOG00000031666	SMNDC1	100	75.210	Cavia_porcellus
ENSPREG00000012279	smndc1	100	75.210	ENSCCAG00000021793	SMNDC1	100	75.210	Cebus_capucinus
ENSPREG00000012279	smndc1	100	74.790	ENSCATG00000035910	SMNDC1	100	74.790	Cercocebus_atys
ENSPREG00000012279	smndc1	100	75.210	ENSCLAG00000002838	SMNDC1	100	75.210	Chinchilla_lanigera
ENSPREG00000012279	smndc1	100	75.210	ENSCSAG00000005169	SMNDC1	100	75.210	Chlorocebus_sabaeus
ENSPREG00000012279	smndc1	81	70.466	ENSCHOG00000002936	SMNDC1	100	70.466	Choloepus_hoffmanni
ENSPREG00000012279	smndc1	100	75.630	ENSCPBG00000012837	SMNDC1	100	75.630	Chrysemys_picta_bellii
ENSPREG00000012279	smndc1	100	75.210	ENSCANG00000031720	-	100	75.210	Colobus_angolensis_palliatus
ENSPREG00000012279	smndc1	100	58.824	ENSCANG00000036994	-	100	58.824	Colobus_angolensis_palliatus
ENSPREG00000012279	smndc1	100	68.908	ENSCANG00000034620	-	100	68.908	Colobus_angolensis_palliatus
ENSPREG00000012279	smndc1	100	74.790	ENSCGRG00001012973	Smndc1	100	74.790	Cricetulus_griseus_chok1gshd
ENSPREG00000012279	smndc1	100	74.790	ENSCGRG00000012396	Smndc1	100	74.790	Cricetulus_griseus_crigri
ENSPREG00000012279	smndc1	100	85.294	ENSCSEG00000015621	smndc1	100	85.294	Cynoglossus_semilaevis
ENSPREG00000012279	smndc1	100	91.176	ENSCVAG00000020432	smndc1	100	91.176	Cyprinodon_variegatus
ENSPREG00000012279	smndc1	100	81.172	ENSDARG00000056235	smndc1	100	81.172	Danio_rerio
ENSPREG00000012279	smndc1	100	75.210	ENSDNOG00000016387	SMNDC1	83	75.210	Dasypus_novemcinctus
ENSPREG00000012279	smndc1	100	75.210	ENSDORG00000023715	Smndc1	100	75.210	Dipodomys_ordii
ENSPREG00000012279	smndc1	95	40.964	FBgn0039977	CG17454	98	41.365	Drosophila_melanogaster
ENSPREG00000012279	smndc1	100	68.050	ENSEBUG00000010929	smndc1	100	69.710	Eptatretus_burgeri
ENSPREG00000012279	smndc1	100	75.210	ENSEASG00005014930	SMNDC1	100	75.210	Equus_asinus_asinus
ENSPREG00000012279	smndc1	100	75.210	ENSECAG00000029973	SMNDC1	100	75.210	Equus_caballus
ENSPREG00000012279	smndc1	83	54.545	ENSEEUG00000013407	-	100	54.545	Erinaceus_europaeus
ENSPREG00000012279	smndc1	100	81.513	ENSELUG00000000227	smndc1	100	81.513	Esox_lucius
ENSPREG00000012279	smndc1	100	75.210	ENSFCAG00000027353	SMNDC1	100	75.210	Felis_catus
ENSPREG00000012279	smndc1	100	76.891	ENSFALG00000002306	SMNDC1	100	76.891	Ficedula_albicollis
ENSPREG00000012279	smndc1	100	75.210	ENSFDAG00000006468	SMNDC1	100	75.210	Fukomys_damarensis
ENSPREG00000012279	smndc1	100	92.437	ENSFHEG00000020150	smndc1	100	92.437	Fundulus_heteroclitus
ENSPREG00000012279	smndc1	100	81.513	ENSGMOG00000016585	smndc1	100	81.513	Gadus_morhua
ENSPREG00000012279	smndc1	100	76.891	ENSGALG00000008561	SMNDC1	100	76.891	Gallus_gallus
ENSPREG00000012279	smndc1	100	95.798	ENSGAFG00000011582	smndc1	100	95.798	Gambusia_affinis
ENSPREG00000012279	smndc1	100	86.134	ENSGACG00000009468	smndc1	100	86.134	Gasterosteus_aculeatus
ENSPREG00000012279	smndc1	100	75.630	ENSGAGG00000024547	SMNDC1	100	75.630	Gopherus_agassizii
ENSPREG00000012279	smndc1	100	75.210	ENSGGOG00000010071	SMNDC1	100	75.210	Gorilla_gorilla
ENSPREG00000012279	smndc1	100	88.235	ENSHBUG00000017596	smndc1	100	88.235	Haplochromis_burtoni
ENSPREG00000012279	smndc1	100	55.328	ENSHGLG00000001157	-	100	53.689	Heterocephalus_glaber_female
ENSPREG00000012279	smndc1	100	75.210	ENSHGLG00000013390	-	100	75.210	Heterocephalus_glaber_female
ENSPREG00000012279	smndc1	100	75.210	ENSHGLG00100004814	-	100	75.210	Heterocephalus_glaber_male
ENSPREG00000012279	smndc1	100	60.656	ENSHGLG00100004278	-	100	58.871	Heterocephalus_glaber_male
ENSPREG00000012279	smndc1	100	82.845	ENSHCOG00000000783	smndc1	100	82.845	Hippocampus_comes
ENSPREG00000012279	smndc1	100	81.513	ENSIPUG00000004217	smndc1	100	81.513	Ictalurus_punctatus
ENSPREG00000012279	smndc1	100	75.210	ENSSTOG00000006088	SMNDC1	100	75.210	Ictidomys_tridecemlineatus
ENSPREG00000012279	smndc1	100	75.210	ENSJJAG00000019974	Smndc1	100	75.210	Jaculus_jaculus
ENSPREG00000012279	smndc1	100	89.076	ENSKMAG00000020134	smndc1	100	89.076	Kryptolebias_marmoratus
ENSPREG00000012279	smndc1	100	87.395	ENSLBEG00000004598	smndc1	100	87.395	Labrus_bergylta
ENSPREG00000012279	smndc1	100	75.210	ENSLACG00000007784	SMNDC1	100	75.210	Latimeria_chalumnae
ENSPREG00000012279	smndc1	100	82.353	ENSLOCG00000012355	smndc1	100	82.353	Lepisosteus_oculatus
ENSPREG00000012279	smndc1	100	74.790	ENSLAFG00000014353	SMNDC1	100	74.790	Loxodonta_africana
ENSPREG00000012279	smndc1	100	75.210	ENSMFAG00000002433	-	100	75.210	Macaca_fascicularis
ENSPREG00000012279	smndc1	100	62.605	ENSMFAG00000038381	-	100	62.605	Macaca_fascicularis
ENSPREG00000012279	smndc1	100	75.210	ENSMMUG00000007775	SMNDC1	100	75.210	Macaca_mulatta
ENSPREG00000012279	smndc1	100	62.605	ENSMMUG00000045875	-	100	62.605	Macaca_mulatta
ENSPREG00000012279	smndc1	100	75.210	ENSMNEG00000042963	-	100	75.210	Macaca_nemestrina
ENSPREG00000012279	smndc1	100	65.966	ENSMNEG00000033853	-	100	65.966	Macaca_nemestrina
ENSPREG00000012279	smndc1	100	70.711	ENSMLEG00000040236	SMNDC1	100	70.293	Mandrillus_leucophaeus
ENSPREG00000012279	smndc1	89	84.507	ENSMAMG00000018233	smndc1	87	84.507	Mastacembelus_armatus
ENSPREG00000012279	smndc1	100	88.235	ENSMZEG00005027510	smndc1	100	88.235	Maylandia_zebra
ENSPREG00000012279	smndc1	99	67.932	ENSMGAG00000010777	SMNDC1	99	67.932	Meleagris_gallopavo
ENSPREG00000012279	smndc1	99	61.603	ENSMAUG00000005459	-	93	61.603	Mesocricetus_auratus
ENSPREG00000012279	smndc1	100	75.210	ENSMAUG00000012243	-	100	75.210	Mesocricetus_auratus
ENSPREG00000012279	smndc1	100	65.126	ENSMICG00000031640	-	100	65.126	Microcebus_murinus
ENSPREG00000012279	smndc1	100	74.790	ENSMICG00000027336	-	100	74.790	Microcebus_murinus
ENSPREG00000012279	smndc1	100	74.790	ENSMOCG00000002458	Smndc1	100	74.790	Microtus_ochrogaster
ENSPREG00000012279	smndc1	100	86.134	ENSMMOG00000008856	smndc1	100	86.134	Mola_mola
ENSPREG00000012279	smndc1	100	75.210	ENSMODG00000010542	SMNDC1	100	75.210	Monodelphis_domestica
ENSPREG00000012279	smndc1	100	86.134	ENSMALG00000017598	smndc1	100	86.134	Monopterus_albus
ENSPREG00000012279	smndc1	100	75.210	MGP_CAROLIEiJ_G0023072	Smndc1	100	75.210	Mus_caroli
ENSPREG00000012279	smndc1	100	75.210	ENSMUSG00000025024	Smndc1	100	75.210	Mus_musculus
ENSPREG00000012279	smndc1	100	75.210	MGP_PahariEiJ_G0014560	Smndc1	100	75.210	Mus_pahari
ENSPREG00000012279	smndc1	100	75.210	MGP_SPRETEiJ_G0023993	Smndc1	100	75.210	Mus_spretus
ENSPREG00000012279	smndc1	100	75.210	ENSMPUG00000002089	SMNDC1	100	75.210	Mustela_putorius_furo
ENSPREG00000012279	smndc1	100	75.210	ENSMLUG00000016007	SMNDC1	100	75.210	Myotis_lucifugus
ENSPREG00000012279	smndc1	100	75.630	ENSNGAG00000006833	Smndc1	100	75.630	Nannospalax_galili
ENSPREG00000012279	smndc1	100	88.655	ENSNBRG00000017089	smndc1	100	88.655	Neolamprologus_brichardi
ENSPREG00000012279	smndc1	100	75.210	ENSNLEG00000015471	SMNDC1	100	75.210	Nomascus_leucogenys
ENSPREG00000012279	smndc1	70	57.485	ENSMEUG00000010120	-	82	57.485	Notamacropus_eugenii
ENSPREG00000012279	smndc1	100	75.210	ENSOPRG00000015348	SMNDC1	100	75.210	Ochotona_princeps
ENSPREG00000012279	smndc1	100	53.782	ENSODEG00000007594	-	100	51.681	Octodon_degus
ENSPREG00000012279	smndc1	100	88.655	ENSONIG00000000434	smndc1	100	88.655	Oreochromis_niloticus
ENSPREG00000012279	smndc1	100	75.630	ENSOANG00000001598	SMNDC1	100	75.630	Ornithorhynchus_anatinus
ENSPREG00000012279	smndc1	100	74.790	ENSOCUG00000008145	-	100	74.790	Oryctolagus_cuniculus
ENSPREG00000012279	smndc1	100	55.042	ENSOCUG00000012274	-	100	57.563	Oryctolagus_cuniculus
ENSPREG00000012279	smndc1	100	83.613	ENSORLG00000005934	smndc1	95	83.613	Oryzias_latipes
ENSPREG00000012279	smndc1	100	83.613	ENSORLG00020008796	smndc1	95	83.613	Oryzias_latipes_hni
ENSPREG00000012279	smndc1	100	83.613	ENSORLG00015013666	smndc1	100	83.613	Oryzias_latipes_hsok
ENSPREG00000012279	smndc1	100	84.454	ENSOMEG00000007590	smndc1	100	84.454	Oryzias_melastigma
ENSPREG00000012279	smndc1	100	75.210	ENSOGAG00000000571	SMNDC1	100	75.210	Otolemur_garnettii
ENSPREG00000012279	smndc1	100	75.210	ENSOARG00000009500	SMNDC1	100	75.210	Ovis_aries
ENSPREG00000012279	smndc1	100	75.210	ENSPPAG00000027815	SMNDC1	100	75.210	Pan_paniscus
ENSPREG00000012279	smndc1	100	75.210	ENSPPRG00000013749	SMNDC1	100	75.210	Panthera_pardus
ENSPREG00000012279	smndc1	100	75.210	ENSPTIG00000011451	SMNDC1	100	75.210	Panthera_tigris_altaica
ENSPREG00000012279	smndc1	100	75.210	ENSPTRG00000002937	SMNDC1	100	75.210	Pan_troglodytes
ENSPREG00000012279	smndc1	100	71.008	ENSPANG00000031346	-	100	71.008	Papio_anubis
ENSPREG00000012279	smndc1	100	75.210	ENSPANG00000020805	-	100	75.210	Papio_anubis
ENSPREG00000012279	smndc1	100	80.672	ENSPKIG00000017164	smndc1	100	80.672	Paramormyrops_kingsleyae
ENSPREG00000012279	smndc1	100	75.630	ENSPSIG00000012257	SMNDC1	100	75.630	Pelodiscus_sinensis
ENSPREG00000012279	smndc1	100	81.933	ENSPMGG00000015651	smndc1	100	81.933	Periophthalmus_magnuspinnatus
ENSPREG00000012279	smndc1	100	75.210	ENSPEMG00000022058	Smndc1	100	75.210	Peromyscus_maniculatus_bairdii
ENSPREG00000012279	smndc1	100	65.164	ENSPMAG00000007705	smndc1	100	65.432	Petromyzon_marinus
ENSPREG00000012279	smndc1	95	57.269	ENSPCIG00000009693	-	98	57.269	Phascolarctos_cinereus
ENSPREG00000012279	smndc1	100	75.210	ENSPCIG00000018419	SMNDC1	100	75.210	Phascolarctos_cinereus
ENSPREG00000012279	smndc1	100	97.059	ENSPFOG00000017113	smndc1	100	97.059	Poecilia_formosa
ENSPREG00000012279	smndc1	100	96.639	ENSPLAG00000010372	smndc1	100	96.639	Poecilia_latipinna
ENSPREG00000012279	smndc1	100	96.218	ENSPMEG00000012288	smndc1	100	96.218	Poecilia_mexicana
ENSPREG00000012279	smndc1	100	75.210	ENSPPYG00000002643	SMNDC1	100	75.210	Pongo_abelii
ENSPREG00000012279	smndc1	81	70.466	ENSPCAG00000016183	SMNDC1	100	70.466	Procavia_capensis
ENSPREG00000012279	smndc1	100	74.790	ENSPCOG00000024343	SMNDC1	100	74.790	Propithecus_coquereli
ENSPREG00000012279	smndc1	100	60.084	ENSPVAG00000004368	SMNDC1	100	60.084	Pteropus_vampyrus
ENSPREG00000012279	smndc1	83	86.364	ENSPNYG00000024093	smndc1	86	86.364	Pundamilia_nyererei
ENSPREG00000012279	smndc1	100	78.151	ENSPNAG00000025285	smndc1	100	78.151	Pygocentrus_nattereri
ENSPREG00000012279	smndc1	100	75.210	ENSRNOG00000014833	Smndc1	100	75.210	Rattus_norvegicus
ENSPREG00000012279	smndc1	100	74.790	ENSRBIG00000000224	-	100	74.790	Rhinopithecus_bieti
ENSPREG00000012279	smndc1	100	61.765	ENSRBIG00000032452	-	100	61.765	Rhinopithecus_bieti
ENSPREG00000012279	smndc1	100	75.210	ENSRROG00000044992	-	100	75.210	Rhinopithecus_roxellana
ENSPREG00000012279	smndc1	100	61.765	ENSRROG00000039125	-	100	61.765	Rhinopithecus_roxellana
ENSPREG00000012279	smndc1	100	75.210	ENSSBOG00000026789	SMNDC1	100	75.210	Saimiri_boliviensis_boliviensis
ENSPREG00000012279	smndc1	100	75.210	ENSSHAG00000015189	SMNDC1	100	75.210	Sarcophilus_harrisii
ENSPREG00000012279	smndc1	100	80.252	ENSSFOG00015008311	smndc1	100	80.252	Scleropages_formosus
ENSPREG00000012279	smndc1	100	88.235	ENSSMAG00000020118	smndc1	100	88.235	Scophthalmus_maximus
ENSPREG00000012279	smndc1	100	88.235	ENSSDUG00000015330	smndc1	100	88.235	Seriola_dumerili
ENSPREG00000012279	smndc1	100	87.815	ENSSLDG00000017325	smndc1	100	87.815	Seriola_lalandi_dorsalis
ENSPREG00000012279	smndc1	100	75.210	ENSSARG00000006063	SMNDC1	100	75.210	Sorex_araneus
ENSPREG00000012279	smndc1	100	76.891	ENSSPUG00000004574	SMNDC1	100	76.891	Sphenodon_punctatus
ENSPREG00000012279	smndc1	100	87.815	ENSSPAG00000000338	smndc1	100	87.815	Stegastes_partitus
ENSPREG00000012279	smndc1	100	75.210	ENSSSCG00000030507	SMNDC1	100	75.210	Sus_scrofa
ENSPREG00000012279	smndc1	100	76.891	ENSTGUG00000010599	SMNDC1	100	76.891	Taeniopygia_guttata
ENSPREG00000012279	smndc1	100	83.193	ENSTRUG00000023281	smndc1	100	83.193	Takifugu_rubripes
ENSPREG00000012279	smndc1	100	84.034	ENSTNIG00000013331	smndc1	100	84.034	Tetraodon_nigroviridis
ENSPREG00000012279	smndc1	100	75.210	ENSTBEG00000014337	SMNDC1	100	75.210	Tupaia_belangeri
ENSPREG00000012279	smndc1	100	75.210	ENSUAMG00000008142	SMNDC1	100	75.210	Ursus_americanus
ENSPREG00000012279	smndc1	100	75.210	ENSUMAG00000023722	SMNDC1	100	75.210	Ursus_maritimus
ENSPREG00000012279	smndc1	83	74.242	ENSVPAG00000003402	SMNDC1	100	74.242	Vicugna_pacos
ENSPREG00000012279	smndc1	100	75.210	ENSVVUG00000007820	SMNDC1	100	75.210	Vulpes_vulpes
ENSPREG00000012279	smndc1	57	63.971	ENSXETG00000015415	SMNDC1	96	63.971	Xenopus_tropicalis
ENSPREG00000012279	smndc1	100	94.958	ENSXCOG00000009159	smndc1	100	94.958	Xiphophorus_couchianus
ENSPREG00000012279	smndc1	100	95.798	ENSXMAG00000012755	smndc1	100	95.798	Xiphophorus_maculatus