EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPREG00000012452 (Gene tree)
Gene ID: 103457049
Gene Symbol: xrn2
Alias: wu:fb38g12|wu:fj53d06|zgc:55717
Full Name: 5'-3' exoribonuclease 2
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Minus strand
Length: 21651 bases
Position: chrLG21:452818-474468
Accession: 103457049
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000018446	XRN_N	PF03159.18	2.9e-102	1	1
ENSPREP00000018387	XRN_N	PF03159.18	3.3e-102	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000018646	-	2682	-	ENSPREP00000018446	893 (aa)	-	UPI0004A34649
ENSPRET00000018588	-	5808	XM_008396954	ENSPREP00000018387	943 (aa)	XP_008395176	-

Gene Model

Click here to download ENSPREG00000012452's gene model file

Pathways

Pathway ID	Pathway Name	Source
pret03008	Ribosome biogenesis in eukaryotes	KEGG
pret03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000012452's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000012452	xrn2	99	72.727	ENSG00000088930	XRN2	89	74.302	Homo_sapiens
ENSPREG00000012452	xrn2	99	87.188	ENSAPOG00000009818	xrn2	89	87.529	Acanthochromis_polyacanthus
ENSPREG00000012452	xrn2	99	72.503	ENSAMEG00000012581	XRN2	89	74.070	Ailuropoda_melanoleuca
ENSPREG00000012452	xrn2	97	80.947	ENSACIG00000015047	xrn2	95	87.238	Amphilophus_citrinellus
ENSPREG00000012452	xrn2	99	88.209	ENSAOCG00000023632	xrn2	90	88.558	Amphiprion_ocellaris
ENSPREG00000012452	xrn2	99	88.095	ENSAPEG00000014871	xrn2	89	88.444	Amphiprion_percula
ENSPREG00000012452	xrn2	99	86.848	ENSATEG00000001273	xrn2	91	87.185	Anabas_testudineus
ENSPREG00000012452	xrn2	96	72.811	ENSAPLG00000013869	XRN2	90	74.052	Anas_platyrhynchos
ENSPREG00000012452	xrn2	99	73.266	ENSACAG00000005565	XRN2	90	74.456	Anolis_carolinensis
ENSPREG00000012452	xrn2	99	72.615	ENSANAG00000020126	XRN2	89	74.186	Aotus_nancymaae
ENSPREG00000012452	xrn2	97	85.253	ENSACLG00000010522	xrn2	98	85.253	Astatotilapia_calliptera
ENSPREG00000012452	xrn2	99	81.444	ENSAMXG00000018301	xrn2	92	82.147	Astyanax_mexicanus
ENSPREG00000012452	xrn2	99	72.278	ENSBTAG00000011304	XRN2	89	73.837	Bos_taurus
ENSPREG00000012452	xrn2	93	53.918	WBGene00006964	xrn-2	87	53.918	Caenorhabditis_elegans
ENSPREG00000012452	xrn2	99	72.391	ENSCJAG00000005611	XRN2	89	73.953	Callithrix_jacchus
ENSPREG00000012452	xrn2	99	72.727	ENSCAFG00000005185	XRN2	89	74.302	Canis_familiaris
ENSPREG00000012452	xrn2	99	72.727	ENSCAFG00020027479	XRN2	89	74.302	Canis_lupus_dingo
ENSPREG00000012452	xrn2	99	72.391	ENSCHIG00000006921	XRN2	89	73.953	Capra_hircus
ENSPREG00000012452	xrn2	99	72.503	ENSTSYG00000008315	XRN2	89	74.070	Carlito_syrichta
ENSPREG00000012452	xrn2	93	63.876	ENSCAPG00000010773	XRN2	87	62.799	Cavia_aperea
ENSPREG00000012452	xrn2	99	73.288	ENSCPOG00000009407	XRN2	89	74.884	Cavia_porcellus
ENSPREG00000012452	xrn2	99	72.727	ENSCATG00000040350	XRN2	90	74.302	Cercocebus_atys
ENSPREG00000012452	xrn2	99	73.064	ENSCLAG00000013419	XRN2	89	74.651	Chinchilla_lanigera
ENSPREG00000012452	xrn2	99	72.727	ENSCSAG00000011094	XRN2	89	74.302	Chlorocebus_sabaeus
ENSPREG00000012452	xrn2	65	87.634	ENSCHOG00000013404	XRN2	63	87.634	Choloepus_hoffmanni
ENSPREG00000012452	xrn2	100	73.119	ENSCPBG00000023533	XRN2	90	75.230	Chrysemys_picta_bellii
ENSPREG00000012452	xrn2	92	59.408	ENSCING00000022336	-	100	60.592	Ciona_intestinalis
ENSPREG00000012452	xrn2	87	70.233	ENSCSAVG00000011217	-	91	71.325	Ciona_savignyi
ENSPREG00000012452	xrn2	99	72.727	ENSCANG00000040240	XRN2	89	74.302	Colobus_angolensis_palliatus
ENSPREG00000012452	xrn2	99	73.430	ENSCGRG00001010676	Xrn2	91	75.261	Cricetulus_griseus_chok1gshd
ENSPREG00000012452	xrn2	96	72.402	ENSCGRG00000006378	Xrn2	89	74.251	Cricetulus_griseus_crigri
ENSPREG00000012452	xrn2	58	79.808	ENSCSEG00000005628	xrn2	100	79.615	Cynoglossus_semilaevis
ENSPREG00000012452	xrn2	98	86.966	ENSCVAG00000018999	xrn2	98	93.881	Cyprinodon_variegatus
ENSPREG00000012452	xrn2	96	81.473	ENSDARG00000101900	xrn2	96	84.895	Danio_rerio
ENSPREG00000012452	xrn2	99	72.952	ENSDNOG00000001895	XRN2	89	74.419	Dasypus_novemcinctus
ENSPREG00000012452	xrn2	99	71.991	ENSDORG00000005434	Xrn2	89	73.372	Dipodomys_ordii
ENSPREG00000012452	xrn2	93	55.156	FBgn0031868	Rat1	92	54.171	Drosophila_melanogaster
ENSPREG00000012452	xrn2	99	62.317	ENSETEG00000001740	XRN2	82	80.292	Echinops_telfairi
ENSPREG00000012452	xrn2	91	69.100	ENSEBUG00000016136	xrn2	100	69.100	Eptatretus_burgeri
ENSPREG00000012452	xrn2	99	73.064	ENSEASG00005002484	XRN2	89	74.651	Equus_asinus_asinus
ENSPREG00000012452	xrn2	93	92.308	ENSECAG00000018988	XRN2	85	92.308	Equus_caballus
ENSPREG00000012452	xrn2	72	96.000	ENSEEUG00000009265	XRN2	67	96.000	Erinaceus_europaeus
ENSPREG00000012452	xrn2	99	82.828	ENSELUG00000000552	xrn2	90	83.447	Esox_lucius
ENSPREG00000012452	xrn2	99	72.391	ENSFCAG00000007970	XRN2	89	73.953	Felis_catus
ENSPREG00000012452	xrn2	97	74.480	ENSFALG00000004508	XRN2	90	74.480	Ficedula_albicollis
ENSPREG00000012452	xrn2	99	72.952	ENSFDAG00000016311	XRN2	89	74.535	Fukomys_damarensis
ENSPREG00000012452	xrn2	58	86.398	ENSFHEG00000013039	xrn2	98	86.398	Fundulus_heteroclitus
ENSPREG00000012452	xrn2	93	79.688	ENSGMOG00000013436	xrn2	100	79.688	Gadus_morhua
ENSPREG00000012452	xrn2	99	72.840	ENSGALG00000008372	XRN2	90	74.048	Gallus_gallus
ENSPREG00000012452	xrn2	97	97.581	ENSGAFG00000014284	xrn2	99	97.581	Gambusia_affinis
ENSPREG00000012452	xrn2	94	81.840	ENSGACG00000011870	xrn2	96	87.524	Gasterosteus_aculeatus
ENSPREG00000012452	xrn2	100	72.788	ENSGAGG00000004884	XRN2	90	74.885	Gopherus_agassizii
ENSPREG00000012452	xrn2	99	72.727	ENSGGOG00000013738	XRN2	89	74.302	Gorilla_gorilla
ENSPREG00000012452	xrn2	58	87.739	ENSHBUG00000005077	xrn2	94	87.739	Haplochromis_burtoni
ENSPREG00000012452	xrn2	99	72.054	ENSHGLG00000014831	XRN2	89	73.605	Heterocephalus_glaber_female
ENSPREG00000012452	xrn2	99	72.054	ENSHGLG00100013130	XRN2	89	73.605	Heterocephalus_glaber_male
ENSPREG00000012452	xrn2	99	83.784	ENSHCOG00000011994	xrn2	95	80.985	Hippocampus_comes
ENSPREG00000012452	xrn2	99	80.353	ENSIPUG00000006639	xrn2	92	81.194	Ictalurus_punctatus
ENSPREG00000012452	xrn2	99	72.952	ENSSTOG00000000589	XRN2	89	74.535	Ictidomys_tridecemlineatus
ENSPREG00000012452	xrn2	99	73.401	ENSJJAG00000022128	Xrn2	89	75.000	Jaculus_jaculus
ENSPREG00000012452	xrn2	58	89.251	ENSLBEG00000010041	xrn2	100	89.251	Labrus_bergylta
ENSPREG00000012452	xrn2	96	73.624	ENSLACG00000008307	XRN2	98	75.643	Latimeria_chalumnae
ENSPREG00000012452	xrn2	95	77.908	ENSLOCG00000016874	xrn2	93	80.479	Lepisosteus_oculatus
ENSPREG00000012452	xrn2	99	72.952	ENSLAFG00000014624	XRN2	89	74.535	Loxodonta_africana
ENSPREG00000012452	xrn2	99	72.727	ENSMFAG00000038122	XRN2	89	74.302	Macaca_fascicularis
ENSPREG00000012452	xrn2	99	72.727	ENSMMUG00000011405	XRN2	89	74.302	Macaca_mulatta
ENSPREG00000012452	xrn2	99	72.615	ENSMNEG00000040626	XRN2	89	74.186	Macaca_nemestrina
ENSPREG00000012452	xrn2	99	72.615	ENSMLEG00000041897	XRN2	89	74.186	Mandrillus_leucophaeus
ENSPREG00000012452	xrn2	99	87.415	ENSMAMG00000008633	xrn2	90	87.872	Mastacembelus_armatus
ENSPREG00000012452	xrn2	97	87.212	ENSMZEG00005022362	xrn2	98	87.212	Maylandia_zebra
ENSPREG00000012452	xrn2	99	72.402	ENSMGAG00000003196	XRN2	90	73.594	Meleagris_gallopavo
ENSPREG00000012452	xrn2	99	73.543	ENSMAUG00000021842	Xrn2	89	75.145	Mesocricetus_auratus
ENSPREG00000012452	xrn2	99	72.615	ENSMICG00000008126	XRN2	89	74.302	Microcebus_murinus
ENSPREG00000012452	xrn2	99	73.064	ENSMOCG00000012588	Xrn2	89	74.884	Microtus_ochrogaster
ENSPREG00000012452	xrn2	98	84.312	ENSMMOG00000017576	xrn2	96	86.450	Mola_mola
ENSPREG00000012452	xrn2	99	73.146	ENSMODG00000006163	XRN2	90	74.309	Monodelphis_domestica
ENSPREG00000012452	xrn2	97	85.682	ENSMALG00000011355	xrn2	95	91.363	Monopterus_albus
ENSPREG00000012452	xrn2	99	72.921	MGP_CAROLIEiJ_G0024400	Xrn2	90	73.963	Mus_caroli
ENSPREG00000012452	xrn2	99	73.034	ENSMUSG00000027433	Xrn2	90	74.078	Mus_musculus
ENSPREG00000012452	xrn2	99	72.921	MGP_PahariEiJ_G0025843	Xrn2	90	73.963	Mus_pahari
ENSPREG00000012452	xrn2	99	73.034	MGP_SPRETEiJ_G0025318	Xrn2	94	84.034	Mus_spretus
ENSPREG00000012452	xrn2	99	71.145	ENSMPUG00000001198	XRN2	83	72.634	Mustela_putorius_furo
ENSPREG00000012452	xrn2	99	72.809	ENSMLUG00000001536	XRN2	89	74.389	Myotis_lucifugus
ENSPREG00000012452	xrn2	96	74.884	ENSNGAG00000018138	Xrn2	89	74.884	Nannospalax_galili
ENSPREG00000012452	xrn2	97	87.212	ENSNBRG00000008062	xrn2	98	87.212	Neolamprologus_brichardi
ENSPREG00000012452	xrn2	99	72.727	ENSNLEG00000009991	XRN2	89	74.302	Nomascus_leucogenys
ENSPREG00000012452	xrn2	55	82.222	ENSMEUG00000008622	-	53	82.222	Notamacropus_eugenii
ENSPREG00000012452	xrn2	66	72.105	ENSOPRG00000001397	-	63	72.105	Ochotona_princeps
ENSPREG00000012452	xrn2	95	68.713	ENSODEG00000000860	-	91	68.241	Octodon_degus
ENSPREG00000012452	xrn2	99	72.840	ENSODEG00000010745	-	89	74.419	Octodon_degus
ENSPREG00000012452	xrn2	99	86.735	ENSONIG00000018720	xrn2	90	84.738	Oreochromis_niloticus
ENSPREG00000012452	xrn2	96	75.233	ENSOANG00000015673	XRN2	89	75.233	Ornithorhynchus_anatinus
ENSPREG00000012452	xrn2	99	73.176	ENSOCUG00000013468	XRN2	89	74.884	Oryctolagus_cuniculus
ENSPREG00000012452	xrn2	98	86.942	ENSORLG00000017213	xrn2	97	86.982	Oryzias_latipes
ENSPREG00000012452	xrn2	98	86.942	ENSORLG00020001824	xrn2	91	86.942	Oryzias_latipes_hni
ENSPREG00000012452	xrn2	98	86.483	ENSORLG00015019747	xrn2	91	86.483	Oryzias_latipes_hsok
ENSPREG00000012452	xrn2	98	86.369	ENSOMEG00000019820	xrn2	89	86.369	Oryzias_melastigma
ENSPREG00000012452	xrn2	99	72.819	ENSOGAG00000001068	XRN2	89	74.392	Otolemur_garnettii
ENSPREG00000012452	xrn2	96	71.676	ENSOARG00000004443	XRN2	89	73.261	Ovis_aries
ENSPREG00000012452	xrn2	99	72.727	ENSPPAG00000033549	XRN2	89	74.302	Pan_paniscus
ENSPREG00000012452	xrn2	99	72.391	ENSPPRG00000008732	XRN2	89	73.953	Panthera_pardus
ENSPREG00000012452	xrn2	96	71.792	ENSPTIG00000015683	XRN2	87	73.381	Panthera_tigris_altaica
ENSPREG00000012452	xrn2	99	72.727	ENSPTRG00000013308	XRN2	89	74.302	Pan_troglodytes
ENSPREG00000012452	xrn2	99	72.727	ENSPANG00000018088	XRN2	89	74.302	Papio_anubis
ENSPREG00000012452	xrn2	100	80.246	ENSPKIG00000016889	xrn2	90	81.672	Paramormyrops_kingsleyae
ENSPREG00000012452	xrn2	87	76.221	ENSPSIG00000014666	XRN2	100	76.221	Pelodiscus_sinensis
ENSPREG00000012452	xrn2	99	73.176	ENSPEMG00000000111	Xrn2	89	74.767	Peromyscus_maniculatus_bairdii
ENSPREG00000012452	xrn2	99	98.092	ENSPFOG00000004182	xrn2	92	98.094	Poecilia_formosa
ENSPREG00000012452	xrn2	99	96.197	ENSPLAG00000007351	xrn2	97	98.157	Poecilia_latipinna
ENSPREG00000012452	xrn2	94	98.088	ENSPMEG00000011798	xrn2	92	98.091	Poecilia_mexicana
ENSPREG00000012452	xrn2	99	72.391	ENSPPYG00000010755	XRN2	89	73.953	Pongo_abelii
ENSPREG00000012452	xrn2	99	68.533	ENSPCAG00000011191	XRN2	89	70.070	Procavia_capensis
ENSPREG00000012452	xrn2	99	66.330	ENSPCOG00000016468	XRN2	88	67.674	Propithecus_coquereli
ENSPREG00000012452	xrn2	91	64.831	ENSPVAG00000004596	XRN2	82	65.639	Pteropus_vampyrus
ENSPREG00000012452	xrn2	97	85.253	ENSPNYG00000001765	xrn2	98	85.253	Pundamilia_nyererei
ENSPREG00000012452	xrn2	98	80.580	ENSPNAG00000010956	xrn2	91	80.743	Pygocentrus_nattereri
ENSPREG00000012452	xrn2	96	75.465	ENSRNOG00000011785	Xrn2	89	75.465	Rattus_norvegicus
ENSPREG00000012452	xrn2	93	75.060	ENSRBIG00000036193	XRN2	100	75.181	Rhinopithecus_bieti
ENSPREG00000012452	xrn2	99	72.727	ENSRROG00000044400	XRN2	81	74.302	Rhinopithecus_roxellana
ENSPREG00000012452	xrn2	77	50.638	YOR048C	RAT1	78	54.126	Saccharomyces_cerevisiae
ENSPREG00000012452	xrn2	99	72.615	ENSSBOG00000021014	XRN2	89	74.186	Saimiri_boliviensis_boliviensis
ENSPREG00000012452	xrn2	99	80.311	ENSSFOG00015001091	xrn2	90	82.197	Scleropages_formosus
ENSPREG00000012452	xrn2	99	86.750	ENSSMAG00000007834	xrn2	89	87.086	Scophthalmus_maximus
ENSPREG00000012452	xrn2	98	85.795	ENSSDUG00000012802	xrn2	99	85.568	Seriola_dumerili
ENSPREG00000012452	xrn2	99	87.093	ENSSLDG00000021273	xrn2	98	87.986	Seriola_lalandi_dorsalis
ENSPREG00000012452	xrn2	59	96.000	ENSSARG00000005859	-	56	96.000	Sorex_araneus
ENSPREG00000012452	xrn2	97	72.842	ENSSPUG00000005485	XRN2	88	72.842	Sphenodon_punctatus
ENSPREG00000012452	xrn2	99	86.961	ENSSPAG00000016027	xrn2	90	87.300	Stegastes_partitus
ENSPREG00000012452	xrn2	99	71.044	ENSSSCG00000007109	XRN2	89	72.558	Sus_scrofa
ENSPREG00000012452	xrn2	99	71.924	ENSTGUG00000007535	XRN2	90	73.157	Taeniopygia_guttata
ENSPREG00000012452	xrn2	99	82.899	ENSTRUG00000015489	xrn2	88	83.200	Takifugu_rubripes
ENSPREG00000012452	xrn2	98	81.993	ENSTNIG00000010712	xrn2	96	78.036	Tetraodon_nigroviridis
ENSPREG00000012452	xrn2	99	72.840	ENSTBEG00000004119	XRN2	89	74.419	Tupaia_belangeri
ENSPREG00000012452	xrn2	92	77.425	ENSTTRG00000009087	XRN2	82	77.425	Tursiops_truncatus
ENSPREG00000012452	xrn2	99	72.503	ENSUAMG00000024634	XRN2	92	72.791	Ursus_americanus
ENSPREG00000012452	xrn2	96	71.792	ENSUMAG00000004012	XRN2	84	73.381	Ursus_maritimus
ENSPREG00000012452	xrn2	79	82.848	ENSVPAG00000010694	XRN2	73	82.848	Vicugna_pacos
ENSPREG00000012452	xrn2	99	72.615	ENSVVUG00000012178	XRN2	89	74.186	Vulpes_vulpes
ENSPREG00000012452	xrn2	99	74.494	ENSXETG00000023501	xrn2	90	76.402	Xenopus_tropicalis
ENSPREG00000012452	xrn2	99	97.194	ENSXMAG00000000242	xrn2	92	97.197	Xiphophorus_maculatus