EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPREG00000012848 (Gene tree)
Gene ID: 103480471
Gene Symbol: hdlbpb
Alias: fa07b03|sb:eu532|si:dkey-38p12.2|wu:fa07b03
Full Name: vigilin-like
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Plus strand
Length: 18972 bases
Position: chrLG18:10506645-10525616
Accession: 103480471
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000019000	KH_1	PF00013.29	1.7e-188	1	14
ENSPREP00000019000	KH_1	PF00013.29	1.7e-188	2	14
ENSPREP00000019000	KH_1	PF00013.29	1.7e-188	3	14
ENSPREP00000019000	KH_1	PF00013.29	1.7e-188	4	14
ENSPREP00000019000	KH_1	PF00013.29	1.7e-188	5	14
ENSPREP00000019000	KH_1	PF00013.29	1.7e-188	6	14
ENSPREP00000019000	KH_1	PF00013.29	1.7e-188	7	14
ENSPREP00000019000	KH_1	PF00013.29	1.7e-188	8	14
ENSPREP00000019000	KH_1	PF00013.29	1.7e-188	9	14
ENSPREP00000019000	KH_1	PF00013.29	1.7e-188	10	14
ENSPREP00000019000	KH_1	PF00013.29	1.7e-188	11	14
ENSPREP00000019000	KH_1	PF00013.29	1.7e-188	12	14
ENSPREP00000019000	KH_1	PF00013.29	1.7e-188	13	14
ENSPREP00000019000	KH_1	PF00013.29	1.7e-188	14	14
ENSPREP00000019030	KH_1	PF00013.29	1.9e-188	1	14
ENSPREP00000019030	KH_1	PF00013.29	1.9e-188	2	14
ENSPREP00000019030	KH_1	PF00013.29	1.9e-188	3	14
ENSPREP00000019030	KH_1	PF00013.29	1.9e-188	4	14
ENSPREP00000019030	KH_1	PF00013.29	1.9e-188	5	14
ENSPREP00000019030	KH_1	PF00013.29	1.9e-188	6	14
ENSPREP00000019030	KH_1	PF00013.29	1.9e-188	7	14
ENSPREP00000019030	KH_1	PF00013.29	1.9e-188	8	14
ENSPREP00000019030	KH_1	PF00013.29	1.9e-188	9	14
ENSPREP00000019030	KH_1	PF00013.29	1.9e-188	10	14
ENSPREP00000019030	KH_1	PF00013.29	1.9e-188	11	14
ENSPREP00000019030	KH_1	PF00013.29	1.9e-188	12	14
ENSPREP00000019030	KH_1	PF00013.29	1.9e-188	13	14
ENSPREP00000019030	KH_1	PF00013.29	1.9e-188	14	14

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000019235	-	3943	-	ENSPREP00000019030	1278 (aa)	-	-
ENSPRET00000019205	-	3913	XM_008435424	ENSPREP00000019000	1268 (aa)	XP_008433646	UPI0004A2727D

Gene Model

Click here to download ENSPREG00000012848's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000012848's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPREG00000012848	hdlbpb	100	55.508	ENSPREG00000014450	hdlbpa	100	56.087

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000012848	hdlbpb	100	95.978	ENSAPOG00000006904	hdlbpb	100	95.978	Acanthochromis_polyacanthus
ENSPREG00000012848	hdlbpb	100	90.738	ENSACIG00000016154	hdlbpb	100	90.659	Amphilophus_citrinellus
ENSPREG00000012848	hdlbpb	100	96.688	ENSAOCG00000004083	hdlbpb	100	96.688	Amphiprion_ocellaris
ENSPREG00000012848	hdlbpb	100	96.609	ENSAPEG00000012270	hdlbpb	100	96.609	Amphiprion_percula
ENSPREG00000012848	hdlbpb	100	95.741	ENSATEG00000019877	hdlbpb	100	95.741	Anabas_testudineus
ENSPREG00000012848	hdlbpb	100	82.492	ENSACAG00000003606	-	100	82.492	Anolis_carolinensis
ENSPREG00000012848	hdlbpb	100	96.057	ENSACLG00000006618	hdlbpb	100	96.057	Astatotilapia_calliptera
ENSPREG00000012848	hdlbpb	100	77.970	ENSAMXG00000019946	hdlbpb	100	77.970	Astyanax_mexicanus
ENSPREG00000012848	hdlbpb	100	94.716	ENSCSEG00000000955	hdlbpb	100	94.716	Cynoglossus_semilaevis
ENSPREG00000012848	hdlbpb	100	97.397	ENSCVAG00000005345	hdlbpb	100	97.397	Cyprinodon_variegatus
ENSPREG00000012848	hdlbpb	99	85.399	ENSDARG00000061864	hdlbpb	99	85.399	Danio_rerio
ENSPREG00000012848	hdlbpb	92	69.829	ENSEBUG00000005304	hdlbpb	96	69.658	Eptatretus_burgeri
ENSPREG00000012848	hdlbpb	100	78.257	ENSELUG00000019925	hdlbpb	100	78.414	Esox_lucius
ENSPREG00000012848	hdlbpb	87	34.515	ENSFHEG00000001701	hdlbpb	100	92.587	Fundulus_heteroclitus
ENSPREG00000012848	hdlbpb	95	87.520	ENSGMOG00000004522	hdlbpb	78	87.520	Gadus_morhua
ENSPREG00000012848	hdlbpb	100	98.817	ENSGAFG00000005278	hdlbpb	100	98.817	Gambusia_affinis
ENSPREG00000012848	hdlbpb	99	91.555	ENSGACG00000019361	hdlbpb	100	91.792	Gasterosteus_aculeatus
ENSPREG00000012848	hdlbpb	100	95.899	ENSHBUG00000018434	hdlbpb	100	95.899	Haplochromis_burtoni
ENSPREG00000012848	hdlbpb	100	85.354	ENSIPUG00000003291	HDLBP	100	85.876	Ictalurus_punctatus
ENSPREG00000012848	hdlbpb	100	96.609	ENSKMAG00000016562	hdlbpb	100	96.609	Kryptolebias_marmoratus
ENSPREG00000012848	hdlbpb	100	95.189	ENSLBEG00000027855	hdlbpb	100	95.189	Labrus_bergylta
ENSPREG00000012848	hdlbpb	100	85.189	ENSLACG00000007661	hdlbpb	92	85.189	Latimeria_chalumnae
ENSPREG00000012848	hdlbpb	100	82.979	ENSLOCG00000013909	hdlbpb	100	82.979	Lepisosteus_oculatus
ENSPREG00000012848	hdlbpb	100	96.057	ENSMAMG00000003035	hdlbpb	100	96.057	Mastacembelus_armatus
ENSPREG00000012848	hdlbpb	100	96.057	ENSMZEG00005021465	hdlbpb	100	96.057	Maylandia_zebra
ENSPREG00000012848	hdlbpb	100	94.085	ENSMMOG00000012525	hdlbpb	100	94.401	Mola_mola
ENSPREG00000012848	hdlbpb	100	93.454	ENSMALG00000008938	hdlbpb	100	93.454	Monopterus_albus
ENSPREG00000012848	hdlbpb	100	96.136	ENSNBRG00000002236	hdlbpb	100	96.136	Neolamprologus_brichardi
ENSPREG00000012848	hdlbpb	100	95.741	ENSONIG00000009211	hdlbpb	100	95.741	Oreochromis_niloticus
ENSPREG00000012848	hdlbpb	100	94.716	ENSORLG00000006581	hdlbpb	100	94.716	Oryzias_latipes
ENSPREG00000012848	hdlbpb	100	94.953	ENSORLG00020010012	hdlbpb	100	94.953	Oryzias_latipes_hni
ENSPREG00000012848	hdlbpb	100	95.110	ENSORLG00015006863	hdlbpb	100	95.110	Oryzias_latipes_hsok
ENSPREG00000012848	hdlbpb	100	95.110	ENSOMEG00000011131	hdlbpb	100	95.110	Oryzias_melastigma
ENSPREG00000012848	hdlbpb	100	88.880	ENSPKIG00000005966	hdlbpb	100	88.959	Paramormyrops_kingsleyae
ENSPREG00000012848	hdlbpb	86	93.889	ENSPMGG00000019853	hdlbpb	99	93.889	Periophthalmus_magnuspinnatus
ENSPREG00000012848	hdlbpb	94	74.232	ENSPMAG00000002131	hdlbpb	100	74.232	Petromyzon_marinus
ENSPREG00000012848	hdlbpb	92	64.570	ENSPMAG00000000249	-	99	64.423	Petromyzon_marinus
ENSPREG00000012848	hdlbpb	100	98.362	ENSPFOG00000008755	hdlbpb	100	98.362	Poecilia_formosa
ENSPREG00000012848	hdlbpb	100	99.369	ENSPLAG00000007055	hdlbpb	100	99.369	Poecilia_latipinna
ENSPREG00000012848	hdlbpb	100	99.290	ENSPMEG00000001952	hdlbpb	100	99.290	Poecilia_mexicana
ENSPREG00000012848	hdlbpb	100	95.978	ENSPNYG00000022467	hdlbpb	100	95.978	Pundamilia_nyererei
ENSPREG00000012848	hdlbpb	100	87.618	ENSPNAG00000011104	hdlbpb	100	87.618	Pygocentrus_nattereri
ENSPREG00000012848	hdlbpb	100	87.934	ENSSFOG00015023199	hdlbpb	100	87.934	Scleropages_formosus
ENSPREG00000012848	hdlbpb	100	95.584	ENSSMAG00000008790	hdlbpb	100	95.584	Scophthalmus_maximus
ENSPREG00000012848	hdlbpb	100	96.372	ENSSDUG00000020694	hdlbpb	100	96.372	Seriola_dumerili
ENSPREG00000012848	hdlbpb	100	95.978	ENSSLDG00000020807	hdlbpb	100	95.978	Seriola_lalandi_dorsalis
ENSPREG00000012848	hdlbpb	100	82.808	ENSSPUG00000018688	-	100	82.808	Sphenodon_punctatus
ENSPREG00000012848	hdlbpb	100	96.688	ENSSPAG00000016969	hdlbpb	100	96.688	Stegastes_partitus
ENSPREG00000012848	hdlbpb	98	92.003	ENSTRUG00000012888	hdlbpb	99	92.009	Takifugu_rubripes
ENSPREG00000012848	hdlbpb	99	93.031	ENSTNIG00000002555	hdlbpb	100	93.031	Tetraodon_nigroviridis
ENSPREG00000012848	hdlbpb	100	85.409	ENSXCOG00000001797	hdlbpb	100	85.409	Xiphophorus_couchianus
ENSPREG00000012848	hdlbpb	100	98.659	ENSXMAG00000015633	hdlbpb	100	98.659	Xiphophorus_maculatus