EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPREG00000013264 (Gene tree)
Gene ID: 103477955
Gene Symbol: vars
Alias: CHUNP6879|im:7137378|vars2|wu:fb07a11|wu:fb07d10
Full Name: valyl-tRNA synthetase 2%2C mitochondrial
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Plus strand
Length: 16832 bases
Position: chrLG16:13016099-13032930
Accession: 103477955
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000019648	Val_tRNA-synt_C	PF10458.9	5.9e-06	1	1
ENSPREP00000019648	tRNA-synt_1g	PF09334.11	6.7e-13	1	1
ENSPREP00000019648	Anticodon_1	PF08264.13	3.8e-35	1	1
ENSPREP00000019648	tRNA-synt_1	PF00133.22	6.6e-208	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000019858	-	3648	XM_008431336	ENSPREP00000019648	1215 (aa)	XP_008429558	-

Gene Model

Click here to download ENSPREG00000013264's gene model file

Pathways

Pathway ID	Pathway Name	Source
pret00970	Aminoacyl-tRNA biosynthesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000013264's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPREG00000013264	vars	78	43.634	ENSPREG00000014998	vars2	91	43.634

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000013264	vars	100	63.636	ENSG00000204394	VARS	99	73.006	Homo_sapiens
ENSPREG00000013264	vars	93	93.452	ENSAPOG00000020691	vars	99	86.877	Acanthochromis_polyacanthus
ENSPREG00000013264	vars	93	93.452	ENSAPOG00000020921	vars	99	86.877	Acanthochromis_polyacanthus
ENSPREG00000013264	vars	100	64.044	ENSAMEG00000006417	VARS	100	64.123	Ailuropoda_melanoleuca
ENSPREG00000013264	vars	100	87.280	ENSACIG00000013752	vars	100	87.200	Amphilophus_citrinellus
ENSPREG00000013264	vars	99	93.737	ENSAOCG00000002447	vars	100	87.854	Amphiprion_ocellaris
ENSPREG00000013264	vars	99	93.628	ENSAPEG00000010638	vars	99	85.557	Amphiprion_percula
ENSPREG00000013264	vars	100	86.071	ENSATEG00000020219	vars	100	86.151	Anabas_testudineus
ENSPREG00000013264	vars	86	81.613	ENSACAG00000029133	-	92	81.613	Anolis_carolinensis
ENSPREG00000013264	vars	100	63.636	ENSANAG00000015453	VARS	100	64.123	Aotus_nancymaae
ENSPREG00000013264	vars	100	86.285	ENSACLG00000025699	vars	97	85.893	Astatotilapia_calliptera
ENSPREG00000013264	vars	96	80.924	ENSAMXG00000017716	vars	96	81.009	Astyanax_mexicanus
ENSPREG00000013264	vars	100	63.843	ENSBTAG00000005631	VARS	100	64.094	Bos_taurus
ENSPREG00000013264	vars	100	63.558	ENSCJAG00000002604	VARS	100	63.887	Callithrix_jacchus
ENSPREG00000013264	vars	100	63.858	ENSCAFG00000000636	VARS	100	63.937	Canis_familiaris
ENSPREG00000013264	vars	93	64.958	ENSCAFG00020020790	VARS	96	65.042	Canis_lupus_dingo
ENSPREG00000013264	vars	100	63.686	ENSCHIG00000011008	VARS	100	63.937	Capra_hircus
ENSPREG00000013264	vars	100	63.686	ENSTSYG00000001567	VARS	100	63.858	Carlito_syrichta
ENSPREG00000013264	vars	91	66.084	ENSCAPG00000013736	VARS	98	66.084	Cavia_aperea
ENSPREG00000013264	vars	100	62.972	ENSCPOG00000000870	VARS	100	62.972	Cavia_porcellus
ENSPREG00000013264	vars	100	63.636	ENSCCAG00000035656	VARS	100	63.965	Cebus_capucinus
ENSPREG00000013264	vars	100	63.715	ENSCATG00000022394	VARS	100	64.280	Cercocebus_atys
ENSPREG00000013264	vars	92	62.708	ENSCLAG00000009470	VARS	97	62.696	Chinchilla_lanigera
ENSPREG00000013264	vars	100	63.558	ENSCSAG00000008784	VARS	100	63.965	Chlorocebus_sabaeus
ENSPREG00000013264	vars	80	75.437	ENSCPBG00000007943	VARS	96	75.437	Chrysemys_picta_bellii
ENSPREG00000013264	vars	100	63.608	ENSCANG00000033570	VARS	100	64.016	Colobus_angolensis_palliatus
ENSPREG00000013264	vars	98	73.006	ENSCGRG00001005686	Vars	100	64.016	Cricetulus_griseus_chok1gshd
ENSPREG00000013264	vars	92	61.194	ENSCGRG00000013352	Vars	78	62.083	Cricetulus_griseus_crigri
ENSPREG00000013264	vars	100	81.300	ENSCSEG00000019652	vars	100	81.547	Cynoglossus_semilaevis
ENSPREG00000013264	vars	99	96.304	ENSCVAG00000022398	vars	95	96.304	Cyprinodon_variegatus
ENSPREG00000013264	vars	99	87.873	ENSDARG00000044575	vars	100	79.561	Danio_rerio
ENSPREG00000013264	vars	80	72.393	ENSDORG00000016433	Vars	87	72.393	Dipodomys_ordii
ENSPREG00000013264	vars	65	75.000	ENSETEG00000003824	VARS	70	75.000	Echinops_telfairi
ENSPREG00000013264	vars	54	73.124	ENSEBUG00000007086	vars	83	73.124	Eptatretus_burgeri
ENSPREG00000013264	vars	60	65.068	ENSEBUG00000004637	vars	100	65.068	Eptatretus_burgeri
ENSPREG00000013264	vars	100	64.235	ENSEASG00005015673	VARS	100	64.544	Equus_asinus_asinus
ENSPREG00000013264	vars	100	64.319	ENSECAG00000014620	VARS	100	64.516	Equus_caballus
ENSPREG00000013264	vars	71	71.930	ENSEEUG00000004116	VARS	73	71.930	Erinaceus_europaeus
ENSPREG00000013264	vars	100	78.911	ENSELUG00000006550	vars	97	78.911	Esox_lucius
ENSPREG00000013264	vars	100	64.016	ENSFCAG00000004510	VARS	100	64.173	Felis_catus
ENSPREG00000013264	vars	82	68.580	ENSFDAG00000011401	VARS	100	68.580	Fukomys_damarensis
ENSPREG00000013264	vars	97	95.277	ENSFHEG00000010672	vars	100	88.636	Fundulus_heteroclitus
ENSPREG00000013264	vars	97	87.873	ENSGMOG00000014908	vars	100	77.648	Gadus_morhua
ENSPREG00000013264	vars	100	92.308	ENSGAFG00000021630	vars	100	92.308	Gambusia_affinis
ENSPREG00000013264	vars	99	90.853	ENSGACG00000009601	vars	100	79.656	Gasterosteus_aculeatus
ENSPREG00000013264	vars	100	63.871	ENSGGOG00000011364	VARS	100	64.280	Gorilla_gorilla
ENSPREG00000013264	vars	100	86.207	ENSHBUG00000017151	vars	92	93.114	Haplochromis_burtoni
ENSPREG00000013264	vars	100	62.727	ENSHGLG00000011646	VARS	100	63.121	Heterocephalus_glaber_female
ENSPREG00000013264	vars	93	60.762	ENSHGLG00100018062	VARS	99	60.762	Heterocephalus_glaber_male
ENSPREG00000013264	vars	97	88.580	ENSHCOG00000012198	vars	99	82.750	Hippocampus_comes
ENSPREG00000013264	vars	99	88.090	ENSIPUG00000005218	vars	100	80.016	Ictalurus_punctatus
ENSPREG00000013264	vars	100	63.978	ENSSTOG00000013112	VARS	100	63.978	Ictidomys_tridecemlineatus
ENSPREG00000013264	vars	100	51.585	ENSJJAG00000015343	-	99	53.388	Jaculus_jaculus
ENSPREG00000013264	vars	100	63.199	ENSJJAG00000019749	-	100	63.278	Jaculus_jaculus
ENSPREG00000013264	vars	100	85.360	ENSKMAG00000009455	vars	100	85.760	Kryptolebias_marmoratus
ENSPREG00000013264	vars	99	91.881	ENSLBEG00000010341	vars	100	85.356	Labrus_bergylta
ENSPREG00000013264	vars	94	73.168	ENSLACG00000015232	VARS	99	63.487	Latimeria_chalumnae
ENSPREG00000013264	vars	100	71.317	ENSLOCG00000004240	vars	100	71.317	Lepisosteus_oculatus
ENSPREG00000013264	vars	100	63.344	ENSLAFG00000023090	VARS	100	63.672	Loxodonta_africana
ENSPREG00000013264	vars	100	63.558	ENSMFAG00000001032	VARS	100	64.123	Macaca_fascicularis
ENSPREG00000013264	vars	100	63.558	ENSMMUG00000006828	VARS	100	64.123	Macaca_mulatta
ENSPREG00000013264	vars	100	63.558	ENSMNEG00000042072	VARS	100	64.123	Macaca_nemestrina
ENSPREG00000013264	vars	100	63.636	ENSMLEG00000039307	VARS	100	64.201	Mandrillus_leucophaeus
ENSPREG00000013264	vars	97	92.292	ENSMAMG00000003949	vars	100	84.559	Mastacembelus_armatus
ENSPREG00000013264	vars	100	86.814	ENSMZEG00005018327	vars	100	86.814	Maylandia_zebra
ENSPREG00000013264	vars	100	63.088	ENSMAUG00000006715	Vars	100	63.701	Mesocricetus_auratus
ENSPREG00000013264	vars	100	64.044	ENSMICG00000003548	VARS	100	63.950	Microcebus_murinus
ENSPREG00000013264	vars	96	72.904	ENSMOCG00000015404	Vars	100	62.796	Microtus_ochrogaster
ENSPREG00000013264	vars	100	86.460	ENSMMOG00000015801	vars	100	86.460	Mola_mola
ENSPREG00000013264	vars	100	63.529	ENSMODG00000015204	-	100	63.608	Monodelphis_domestica
ENSPREG00000013264	vars	99	92.798	ENSMALG00000022532	vars	95	92.798	Monopterus_albus
ENSPREG00000013264	vars	100	63.909	MGP_CAROLIEiJ_G0021491	Vars	100	64.224	Mus_caroli
ENSPREG00000013264	vars	100	63.451	ENSMUSG00000007029	Vars	100	64.066	Mus_musculus
ENSPREG00000013264	vars	100	63.815	MGP_PahariEiJ_G0020486	Vars	100	64.145	Mus_pahari
ENSPREG00000013264	vars	100	63.529	MGP_SPRETEiJ_G0022396	Vars	100	64.145	Mus_spretus
ENSPREG00000013264	vars	100	64.173	ENSMPUG00000010821	VARS	100	64.016	Mustela_putorius_furo
ENSPREG00000013264	vars	77	65.861	ENSMLUG00000013126	VARS	100	65.861	Myotis_lucifugus
ENSPREG00000013264	vars	100	63.593	ENSNGAG00000012151	Vars	100	63.593	Nannospalax_galili
ENSPREG00000013264	vars	100	88.221	ENSNBRG00000020520	vars	100	88.221	Neolamprologus_brichardi
ENSPREG00000013264	vars	100	63.715	ENSNLEG00000006351	VARS	100	64.044	Nomascus_leucogenys
ENSPREG00000013264	vars	97	73.211	ENSMEUG00000011378	VARS	94	73.211	Notamacropus_eugenii
ENSPREG00000013264	vars	100	63.686	ENSOPRG00000003607	VARS	100	63.858	Ochotona_princeps
ENSPREG00000013264	vars	100	63.336	ENSODEG00000017681	VARS	100	63.415	Octodon_degus
ENSPREG00000013264	vars	100	86.740	ENSONIG00000013064	vars	94	93.320	Oreochromis_niloticus
ENSPREG00000013264	vars	76	64.346	ENSOANG00000005400	VARS	98	64.226	Ornithorhynchus_anatinus
ENSPREG00000013264	vars	100	63.937	ENSOCUG00000022463	VARS	100	64.269	Oryctolagus_cuniculus
ENSPREG00000013264	vars	97	92.505	ENSORLG00000013063	vars	100	77.975	Oryzias_latipes
ENSPREG00000013264	vars	97	92.402	ENSORLG00020003504	vars	100	78.166	Oryzias_latipes_hni
ENSPREG00000013264	vars	99	92.505	ENSORLG00015009001	vars	100	84.194	Oryzias_latipes_hsok
ENSPREG00000013264	vars	99	92.505	ENSOMEG00000015016	vars	100	84.507	Oryzias_melastigma
ENSPREG00000013264	vars	97	72.597	ENSOGAG00000007515	VARS	100	63.401	Otolemur_garnettii
ENSPREG00000013264	vars	100	63.636	ENSPPAG00000034012	VARS	100	63.965	Pan_paniscus
ENSPREG00000013264	vars	100	64.016	ENSPPRG00000014855	VARS	100	64.173	Panthera_pardus
ENSPREG00000013264	vars	85	67.685	ENSPTIG00000010462	VARS	94	67.647	Panthera_tigris_altaica
ENSPREG00000013264	vars	100	63.558	ENSPTRG00000017985	VARS	100	63.887	Pan_troglodytes
ENSPREG00000013264	vars	95	72.899	ENSPANG00000014565	VARS	100	62.745	Papio_anubis
ENSPREG00000013264	vars	99	85.729	ENSPKIG00000016304	vars	95	85.729	Paramormyrops_kingsleyae
ENSPREG00000013264	vars	100	82.781	ENSPMGG00000023909	vars	100	82.970	Periophthalmus_magnuspinnatus
ENSPREG00000013264	vars	96	72.802	ENSPEMG00000006639	Vars	100	63.780	Peromyscus_maniculatus_bairdii
ENSPREG00000013264	vars	96	72.803	ENSPCIG00000018553	VARS	100	63.088	Phascolarctos_cinereus
ENSPREG00000013264	vars	100	92.229	ENSPFOG00000015690	vars	100	92.229	Poecilia_formosa
ENSPREG00000013264	vars	100	91.915	ENSPLAG00000009590	vars	100	91.915	Poecilia_latipinna
ENSPREG00000013264	vars	100	92.151	ENSPMEG00000004708	vars	100	92.151	Poecilia_mexicana
ENSPREG00000013264	vars	100	62.226	ENSPPYG00000016460	VARS	100	62.549	Pongo_abelii
ENSPREG00000013264	vars	85	67.140	ENSPCAG00000013565	VARS	86	67.140	Procavia_capensis
ENSPREG00000013264	vars	100	63.821	ENSPCOG00000010942	VARS	100	64.072	Propithecus_coquereli
ENSPREG00000013264	vars	100	61.647	ENSPVAG00000012403	VARS	100	61.725	Pteropus_vampyrus
ENSPREG00000013264	vars	100	86.285	ENSPNYG00000022511	vars	95	93.217	Pundamilia_nyererei
ENSPREG00000013264	vars	99	88.308	ENSPNAG00000020962	vars	95	88.308	Pygocentrus_nattereri
ENSPREG00000013264	vars	100	63.451	ENSRNOG00000000867	Vars	100	63.937	Rattus_norvegicus
ENSPREG00000013264	vars	100	63.636	ENSRBIG00000041669	VARS	100	64.044	Rhinopithecus_bieti
ENSPREG00000013264	vars	100	63.636	ENSRROG00000045490	VARS	100	64.044	Rhinopithecus_roxellana
ENSPREG00000013264	vars	98	72.393	ENSSBOG00000035402	VARS	100	63.887	Saimiri_boliviensis_boliviensis
ENSPREG00000013264	vars	100	62.394	ENSSHAG00000006937	VARS	100	63.023	Sarcophilus_harrisii
ENSPREG00000013264	vars	99	85.875	ENSSFOG00015014272	vars	94	85.875	Scleropages_formosus
ENSPREG00000013264	vars	97	90.339	ENSSMAG00000009596	vars	99	83.020	Scophthalmus_maximus
ENSPREG00000013264	vars	100	86.072	ENSSDUG00000014177	vars	100	86.072	Seriola_dumerili
ENSPREG00000013264	vars	100	85.603	ENSSLDG00000025316	vars	100	85.603	Seriola_lalandi_dorsalis
ENSPREG00000013264	vars	99	92.909	ENSSPAG00000017068	vars	100	85.990	Stegastes_partitus
ENSPREG00000013264	vars	100	63.480	ENSSSCG00000038950	VARS	100	63.808	Sus_scrofa
ENSPREG00000013264	vars	81	79.334	ENSTRUG00000012307	vars	98	79.374	Takifugu_rubripes
ENSPREG00000013264	vars	99	89.311	ENSTNIG00000008011	vars	95	89.311	Tetraodon_nigroviridis
ENSPREG00000013264	vars	97	67.996	ENSTTRG00000014128	VARS	94	67.996	Tursiops_truncatus
ENSPREG00000013264	vars	100	62.382	ENSUAMG00000010424	VARS	100	62.382	Ursus_americanus
ENSPREG00000013264	vars	100	58.548	ENSUMAG00000013486	VARS	100	58.626	Ursus_maritimus
ENSPREG00000013264	vars	100	64.088	ENSVVUG00000021323	VARS	100	64.630	Vulpes_vulpes
ENSPREG00000013264	vars	100	61.454	ENSXETG00000024076	vars	100	62.334	Xenopus_tropicalis
ENSPREG00000013264	vars	100	91.134	ENSXCOG00000019172	vars	100	91.134	Xiphophorus_couchianus
ENSPREG00000013264	vars	100	92.072	ENSXMAG00000010927	vars	100	92.072	Xiphophorus_maculatus