EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPREG00000013453 (Gene tree)
Gene ID: 103474987
Gene Symbol: urb1
Alias: -
Full Name: URB1 ribosome biogenesis homolog
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Plus strand
Length: 17276 bases
Position: chrLG13:27143107-27160382
Accession: 103474987
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000019874	Npa1	PF11707.8	4.4e-78	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000020086	-	6741	XM_008426331	ENSPREP00000019874	2246 (aa)	XP_008424553	UPI0004A35831

Gene Model

Click here to download ENSPREG00000013453's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000013453's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000013453	urb1	98	43.828	ENSG00000142207	URB1	98	43.722	Homo_sapiens
ENSPREG00000013453	urb1	100	69.289	ENSAPOG00000020308	urb1	100	69.200	Acanthochromis_polyacanthus
ENSPREG00000013453	urb1	99	44.030	ENSAMEG00000011998	URB1	99	44.123	Ailuropoda_melanoleuca
ENSPREG00000013453	urb1	95	66.170	ENSACIG00000003248	urb1	97	65.893	Amphilophus_citrinellus
ENSPREG00000013453	urb1	100	64.012	ENSAOCG00000010364	urb1	100	63.924	Amphiprion_ocellaris
ENSPREG00000013453	urb1	97	74.098	ENSAPEG00000010758	urb1	99	73.885	Amphiprion_percula
ENSPREG00000013453	urb1	100	69.344	ENSATEG00000011790	urb1	100	69.344	Anabas_testudineus
ENSPREG00000013453	urb1	97	45.271	ENSAPLG00000012791	URB1	99	45.361	Anas_platyrhynchos
ENSPREG00000013453	urb1	99	44.068	ENSACAG00000002817	URB1	99	44.155	Anolis_carolinensis
ENSPREG00000013453	urb1	98	44.211	ENSANAG00000024617	URB1	98	44.014	Aotus_nancymaae
ENSPREG00000013453	urb1	100	70.057	ENSACLG00000024865	urb1	100	70.057	Astatotilapia_calliptera
ENSPREG00000013453	urb1	99	49.043	ENSAMXG00000012306	urb1	99	49.026	Astyanax_mexicanus
ENSPREG00000013453	urb1	98	43.686	ENSBTAG00000012412	URB1	99	43.534	Bos_taurus
ENSPREG00000013453	urb1	98	43.591	ENSCJAG00000009118	URB1	98	43.486	Callithrix_jacchus
ENSPREG00000013453	urb1	98	44.037	ENSCAFG00000008892	URB1	99	44.037	Canis_familiaris
ENSPREG00000013453	urb1	98	43.814	ENSCAFG00020025987	-	98	43.814	Canis_lupus_dingo
ENSPREG00000013453	urb1	98	43.370	ENSCAFG00020025994	-	98	43.370	Canis_lupus_dingo
ENSPREG00000013453	urb1	98	43.975	ENSCHIG00000015645	URB1	98	43.975	Capra_hircus
ENSPREG00000013453	urb1	99	43.301	ENSTSYG00000013286	URB1	99	43.301	Carlito_syrichta
ENSPREG00000013453	urb1	98	42.512	ENSCAPG00000015589	URB1	99	42.512	Cavia_aperea
ENSPREG00000013453	urb1	99	43.404	ENSCPOG00000006748	URB1	99	43.404	Cavia_porcellus
ENSPREG00000013453	urb1	98	44.077	ENSCCAG00000021299	URB1	98	43.970	Cebus_capucinus
ENSPREG00000013453	urb1	99	43.703	ENSCATG00000042630	URB1	99	43.864	Cercocebus_atys
ENSPREG00000013453	urb1	98	44.484	ENSCLAG00000005262	URB1	98	44.484	Chinchilla_lanigera
ENSPREG00000013453	urb1	99	43.222	ENSCSAG00000009584	URB1	99	43.380	Chlorocebus_sabaeus
ENSPREG00000013453	urb1	99	46.157	ENSCPBG00000006454	URB1	99	46.244	Chrysemys_picta_bellii
ENSPREG00000013453	urb1	99	43.816	ENSCANG00000031088	URB1	99	43.977	Colobus_angolensis_palliatus
ENSPREG00000013453	urb1	99	43.401	ENSCGRG00001010616	Urb1	99	43.265	Cricetulus_griseus_chok1gshd
ENSPREG00000013453	urb1	98	43.470	ENSCGRG00000015840	Urb1	99	43.470	Cricetulus_griseus_crigri
ENSPREG00000013453	urb1	100	62.198	ENSCSEG00000012616	urb1	99	62.198	Cynoglossus_semilaevis
ENSPREG00000013453	urb1	93	82.782	ENSCVAG00000009076	urb1	99	82.782	Cyprinodon_variegatus
ENSPREG00000013453	urb1	99	51.673	ENSDARG00000060308	urb1	99	52.025	Danio_rerio
ENSPREG00000013453	urb1	85	46.625	ENSDNOG00000015586	URB1	99	46.677	Dasypus_novemcinctus
ENSPREG00000013453	urb1	98	44.533	ENSDORG00000006735	Urb1	98	44.710	Dipodomys_ordii
ENSPREG00000013453	urb1	90	52.060	ENSETEG00000009080	URB1	90	52.060	Echinops_telfairi
ENSPREG00000013453	urb1	99	42.976	ENSEASG00005007711	URB1	99	44.049	Equus_asinus_asinus
ENSPREG00000013453	urb1	92	54.224	ENSECAG00000013206	URB1	99	46.877	Equus_caballus
ENSPREG00000013453	urb1	52	56.485	ENSEEUG00000003626	-	52	56.485	Erinaceus_europaeus
ENSPREG00000013453	urb1	99	55.272	ENSELUG00000020516	urb1	99	55.473	Esox_lucius
ENSPREG00000013453	urb1	99	43.159	ENSFCAG00000002177	URB1	99	43.159	Felis_catus
ENSPREG00000013453	urb1	97	42.164	ENSFALG00000004636	URB1	98	42.253	Ficedula_albicollis
ENSPREG00000013453	urb1	99	43.885	ENSFDAG00000007288	URB1	95	43.723	Fukomys_damarensis
ENSPREG00000013453	urb1	100	74.547	ENSFHEG00000000202	urb1	99	79.391	Fundulus_heteroclitus
ENSPREG00000013453	urb1	93	56.894	ENSGMOG00000001838	urb1	94	56.894	Gadus_morhua
ENSPREG00000013453	urb1	99	45.820	ENSGALG00000015887	URB1	98	45.820	Gallus_gallus
ENSPREG00000013453	urb1	99	87.055	ENSGAFG00000020694	urb1	99	88.556	Gambusia_affinis
ENSPREG00000013453	urb1	99	67.052	ENSGACG00000011703	urb1	99	67.096	Gasterosteus_aculeatus
ENSPREG00000013453	urb1	99	46.137	ENSGAGG00000022544	URB1	99	46.137	Gopherus_agassizii
ENSPREG00000013453	urb1	98	43.987	ENSGGOG00000000285	URB1	98	43.881	Gorilla_gorilla
ENSPREG00000013453	urb1	100	70.146	ENSHBUG00000001904	urb1	100	70.146	Haplochromis_burtoni
ENSPREG00000013453	urb1	99	42.882	ENSHGLG00000004907	URB1	99	42.882	Heterocephalus_glaber_female
ENSPREG00000013453	urb1	99	43.295	ENSHGLG00100010749	URB1	99	43.295	Heterocephalus_glaber_male
ENSPREG00000013453	urb1	75	59.930	ENSHCOG00000018683	urb1	99	60.047	Hippocampus_comes
ENSPREG00000013453	urb1	99	48.444	ENSIPUG00000014721	urb1	99	48.444	Ictalurus_punctatus
ENSPREG00000013453	urb1	98	44.340	ENSSTOG00000004539	URB1	99	44.005	Ictidomys_tridecemlineatus
ENSPREG00000013453	urb1	93	73.635	ENSKMAG00000006001	urb1	98	74.476	Kryptolebias_marmoratus
ENSPREG00000013453	urb1	97	63.057	ENSLBEG00000027208	urb1	99	63.057	Labrus_bergylta
ENSPREG00000013453	urb1	99	44.086	ENSLACG00000017059	URB1	100	44.148	Latimeria_chalumnae
ENSPREG00000013453	urb1	99	51.902	ENSLOCG00000009190	urb1	99	51.902	Lepisosteus_oculatus
ENSPREG00000013453	urb1	99	43.736	ENSLAFG00000010407	URB1	99	43.736	Loxodonta_africana
ENSPREG00000013453	urb1	99	43.615	ENSMFAG00000034391	URB1	95	43.775	Macaca_fascicularis
ENSPREG00000013453	urb1	99	43.620	ENSMMUG00000010295	URB1	99	43.780	Macaca_mulatta
ENSPREG00000013453	urb1	99	43.280	ENSMNEG00000032981	URB1	99	43.199	Macaca_nemestrina
ENSPREG00000013453	urb1	99	43.855	ENSMLEG00000041435	URB1	99	44.016	Mandrillus_leucophaeus
ENSPREG00000013453	urb1	99	66.050	ENSMAMG00000011238	urb1	99	66.050	Mastacembelus_armatus
ENSPREG00000013453	urb1	100	65.698	ENSMZEG00005011862	urb1	100	65.698	Maylandia_zebra
ENSPREG00000013453	urb1	97	45.500	ENSMGAG00000014512	URB1	98	45.500	Meleagris_gallopavo
ENSPREG00000013453	urb1	91	52.545	ENSMAUG00000010516	Urb1	98	51.830	Mesocricetus_auratus
ENSPREG00000013453	urb1	99	43.827	ENSMICG00000016424	URB1	99	43.648	Microcebus_murinus
ENSPREG00000013453	urb1	99	43.662	ENSMOCG00000012613	Urb1	99	43.706	Microtus_ochrogaster
ENSPREG00000013453	urb1	99	43.001	ENSMODG00000021076	URB1	99	43.001	Monodelphis_domestica
ENSPREG00000013453	urb1	99	64.630	ENSMALG00000017411	urb1	99	64.542	Monopterus_albus
ENSPREG00000013453	urb1	98	43.761	MGP_CAROLIEiJ_G0020948	Urb1	98	43.761	Mus_caroli
ENSPREG00000013453	urb1	98	43.791	ENSMUSG00000039929	Urb1	98	43.791	Mus_musculus
ENSPREG00000013453	urb1	98	43.521	MGP_PahariEiJ_G0016653	Urb1	98	43.444	Mus_pahari
ENSPREG00000013453	urb1	98	44.105	MGP_SPRETEiJ_G0021854	Urb1	98	44.105	Mus_spretus
ENSPREG00000013453	urb1	98	43.936	ENSMPUG00000001123	URB1	98	43.936	Mustela_putorius_furo
ENSPREG00000013453	urb1	99	43.014	ENSNGAG00000001905	Urb1	99	43.014	Nannospalax_galili
ENSPREG00000013453	urb1	83	68.058	ENSNBRG00000001049	urb1	99	68.058	Neolamprologus_brichardi
ENSPREG00000013453	urb1	98	42.851	ENSNLEG00000026872	URB1	98	42.794	Nomascus_leucogenys
ENSPREG00000013453	urb1	89	54.613	ENSMEUG00000010828	URB1	95	40.918	Notamacropus_eugenii
ENSPREG00000013453	urb1	98	42.385	ENSOPRG00000013482	URB1	98	42.481	Ochotona_princeps
ENSPREG00000013453	urb1	99	43.799	ENSODEG00000002587	URB1	99	43.668	Octodon_degus
ENSPREG00000013453	urb1	100	70.557	ENSONIG00000005599	urb1	100	70.557	Oreochromis_niloticus
ENSPREG00000013453	urb1	99	44.303	ENSOCUG00000009381	URB1	99	44.264	Oryctolagus_cuniculus
ENSPREG00000013453	urb1	99	67.553	ENSORLG00000003429	urb1	99	67.553	Oryzias_latipes
ENSPREG00000013453	urb1	99	67.168	ENSORLG00020013785	urb1	99	67.168	Oryzias_latipes_hni
ENSPREG00000013453	urb1	99	64.362	ENSORLG00015019421	urb1	99	66.076	Oryzias_latipes_hsok
ENSPREG00000013453	urb1	79	69.622	ENSOMEG00000002094	urb1	99	69.622	Oryzias_melastigma
ENSPREG00000013453	urb1	98	44.262	ENSOGAG00000017140	URB1	99	44.395	Otolemur_garnettii
ENSPREG00000013453	urb1	98	41.630	ENSOARG00000013679	URB1	97	47.826	Ovis_aries
ENSPREG00000013453	urb1	98	43.853	ENSPPAG00000003423	URB1	98	43.747	Pan_paniscus
ENSPREG00000013453	urb1	99	43.310	ENSPPRG00000023131	URB1	99	43.310	Panthera_pardus
ENSPREG00000013453	urb1	87	45.155	ENSPTIG00000016125	URB1	93	45.140	Panthera_tigris_altaica
ENSPREG00000013453	urb1	98	43.764	ENSPTRG00000013852	URB1	98	43.658	Pan_troglodytes
ENSPREG00000013453	urb1	99	43.811	ENSPANG00000021964	URB1	99	43.972	Papio_anubis
ENSPREG00000013453	urb1	99	52.107	ENSPKIG00000003683	urb1	99	52.195	Paramormyrops_kingsleyae
ENSPREG00000013453	urb1	98	43.540	ENSPEMG00000021205	Urb1	98	43.540	Peromyscus_maniculatus_bairdii
ENSPREG00000013453	urb1	80	33.105	ENSPMAG00000009733	URB1	99	33.298	Petromyzon_marinus
ENSPREG00000013453	urb1	99	42.876	ENSPCIG00000016350	URB1	99	43.323	Phascolarctos_cinereus
ENSPREG00000013453	urb1	97	95.271	ENSPLAG00000004371	urb1	100	95.133	Poecilia_latipinna
ENSPREG00000013453	urb1	100	95.685	ENSPMEG00000006634	urb1	100	95.685	Poecilia_mexicana
ENSPREG00000013453	urb1	98	43.853	ENSPPYG00000011359	URB1	99	43.853	Pongo_abelii
ENSPREG00000013453	urb1	99	39.593	ENSPCAG00000007430	URB1	99	39.637	Procavia_capensis
ENSPREG00000013453	urb1	99	42.913	ENSPCOG00000022695	URB1	99	43.094	Propithecus_coquereli
ENSPREG00000013453	urb1	99	42.707	ENSPVAG00000000889	URB1	99	42.707	Pteropus_vampyrus
ENSPREG00000013453	urb1	100	66.549	ENSPNYG00000010589	urb1	100	66.549	Pundamilia_nyererei
ENSPREG00000013453	urb1	99	49.469	ENSPNAG00000019324	urb1	99	49.322	Pygocentrus_nattereri
ENSPREG00000013453	urb1	98	43.822	ENSRNOG00000002080	Urb1	98	43.822	Rattus_norvegicus
ENSPREG00000013453	urb1	99	43.709	ENSRBIG00000033122	URB1	99	43.869	Rhinopithecus_bieti
ENSPREG00000013453	urb1	99	43.684	ENSRROG00000040237	URB1	99	43.844	Rhinopithecus_roxellana
ENSPREG00000013453	urb1	98	44.102	ENSSBOG00000027672	URB1	98	43.995	Saimiri_boliviensis_boliviensis
ENSPREG00000013453	urb1	99	43.195	ENSSHAG00000005140	URB1	99	43.195	Sarcophilus_harrisii
ENSPREG00000013453	urb1	93	54.981	ENSSFOG00015000339	urb1	99	54.981	Scleropages_formosus
ENSPREG00000013453	urb1	100	69.251	ENSSMAG00000003782	urb1	100	69.309	Scophthalmus_maximus
ENSPREG00000013453	urb1	100	72.281	ENSSDUG00000012313	urb1	99	72.281	Seriola_dumerili
ENSPREG00000013453	urb1	100	71.839	ENSSLDG00000023179	urb1	99	71.839	Seriola_lalandi_dorsalis
ENSPREG00000013453	urb1	99	43.810	ENSSPUG00000012447	URB1	99	43.840	Sphenodon_punctatus
ENSPREG00000013453	urb1	99	71.322	ENSSPAG00000006325	urb1	99	71.233	Stegastes_partitus
ENSPREG00000013453	urb1	99	43.961	ENSSSCG00000032024	URB1	99	44.011	Sus_scrofa
ENSPREG00000013453	urb1	74	47.156	ENSTGUG00000013442	URB1	100	47.156	Taeniopygia_guttata
ENSPREG00000013453	urb1	99	64.852	ENSTRUG00000009372	urb1	99	64.852	Takifugu_rubripes
ENSPREG00000013453	urb1	99	62.673	ENSTNIG00000016277	urb1	99	62.673	Tetraodon_nigroviridis
ENSPREG00000013453	urb1	76	46.839	ENSTBEG00000010044	URB1	75	46.839	Tupaia_belangeri
ENSPREG00000013453	urb1	89	49.426	ENSTTRG00000007712	URB1	90	49.426	Tursiops_truncatus
ENSPREG00000013453	urb1	99	43.723	ENSUAMG00000012231	URB1	99	43.816	Ursus_americanus
ENSPREG00000013453	urb1	88	45.875	ENSUMAG00000017419	URB1	94	45.699	Ursus_maritimus
ENSPREG00000013453	urb1	65	62.162	ENSVPAG00000001164	URB1	67	62.162	Vicugna_pacos
ENSPREG00000013453	urb1	98	44.257	ENSVVUG00000000551	URB1	99	44.174	Vulpes_vulpes
ENSPREG00000013453	urb1	99	44.107	ENSXETG00000009895	urb1	99	43.742	Xenopus_tropicalis
ENSPREG00000013453	urb1	97	94.505	ENSXCOG00000005500	urb1	100	94.505	Xiphophorus_couchianus
ENSPREG00000013453	urb1	97	94.505	ENSXMAG00000007253	urb1	100	94.505	Xiphophorus_maculatus