EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPREG00000013549 (Gene tree)
Gene ID: 103462864
Gene Symbol: cstf3
Alias: cleavage stimulation factor|3 pre-RNA|subunit 3|wu:fa99c02|wu:fb18b09|zgc:56028
Full Name: cleavage stimulation factor subunit 3
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Plus strand
Length: 10939 bases
Position: chrLG3:30185841-30196779
Accession: 103462864
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000020082	Suf	PF05843.14	6.3e-84	1	1
ENSPREP00000020056	Suf	PF05843.14	9.7e-84	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000020294	-	2813	-	ENSPREP00000020082	705 (aa)	-	-
ENSPRET00000020268	-	2846	XM_008405881	ENSPREP00000020056	716 (aa)	XP_008404103	UPI0004A34EAE

Gene Model

Click here to download ENSPREG00000013549's gene model file

Pathways

Pathway ID	Pathway Name	Source
pret03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000013549's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000013549	cstf3	100	90.808	ENSG00000176102	CSTF3	100	90.808	Homo_sapiens
ENSPREG00000013549	cstf3	100	97.207	ENSAPOG00000014054	cstf3	100	97.207	Acanthochromis_polyacanthus
ENSPREG00000013549	cstf3	99	91.243	ENSAMEG00000007187	CSTF3	98	91.243	Ailuropoda_melanoleuca
ENSPREG00000013549	cstf3	88	91.814	ENSACIG00000005539	cstf3	100	91.814	Amphilophus_citrinellus
ENSPREG00000013549	cstf3	100	97.067	ENSAOCG00000010930	cstf3	100	97.067	Amphiprion_ocellaris
ENSPREG00000013549	cstf3	100	97.067	ENSAPEG00000007903	cstf3	100	97.067	Amphiprion_percula
ENSPREG00000013549	cstf3	100	96.927	ENSATEG00000000190	cstf3	100	96.927	Anabas_testudineus
ENSPREG00000013549	cstf3	99	91.384	ENSAPLG00000007217	CSTF3	100	91.384	Anas_platyrhynchos
ENSPREG00000013549	cstf3	100	91.226	ENSACAG00000002823	CSTF3	100	91.226	Anolis_carolinensis
ENSPREG00000013549	cstf3	100	90.808	ENSANAG00000020699	CSTF3	95	96.119	Aotus_nancymaae
ENSPREG00000013549	cstf3	100	96.927	ENSACLG00000007820	cstf3	100	96.927	Astatotilapia_calliptera
ENSPREG00000013549	cstf3	100	91.783	ENSAMXG00000014198	cstf3	100	92.061	Astyanax_mexicanus
ENSPREG00000013549	cstf3	100	90.808	ENSBTAG00000008617	CSTF3	100	91.098	Bos_taurus
ENSPREG00000013549	cstf3	97	47.114	WBGene00006307	suf-1	99	47.114	Caenorhabditis_elegans
ENSPREG00000013549	cstf3	100	90.808	ENSCJAG00000005533	CSTF3	100	90.880	Callithrix_jacchus
ENSPREG00000013549	cstf3	100	90.808	ENSCAFG00000007264	CSTF3	100	90.808	Canis_familiaris
ENSPREG00000013549	cstf3	99	91.384	ENSCAFG00020002715	CSTF3	99	91.248	Canis_lupus_dingo
ENSPREG00000013549	cstf3	98	91.329	ENSCHIG00000016418	CSTF3	100	91.329	Capra_hircus
ENSPREG00000013549	cstf3	99	91.667	ENSTSYG00000000451	CSTF3	99	96.214	Carlito_syrichta
ENSPREG00000013549	cstf3	83	90.754	ENSCAPG00000010958	CSTF3	98	90.754	Cavia_aperea
ENSPREG00000013549	cstf3	100	90.947	ENSCPOG00000005545	CSTF3	100	90.947	Cavia_porcellus
ENSPREG00000013549	cstf3	100	90.808	ENSCCAG00000024790	CSTF3	96	96.214	Cebus_capucinus
ENSPREG00000013549	cstf3	100	90.808	ENSCATG00000007080	CSTF3	100	90.880	Cercocebus_atys
ENSPREG00000013549	cstf3	100	90.808	ENSCLAG00000016179	CSTF3	100	90.808	Chinchilla_lanigera
ENSPREG00000013549	cstf3	78	96.617	ENSCHOG00000002497	CSTF3	79	96.617	Choloepus_hoffmanni
ENSPREG00000013549	cstf3	100	90.808	ENSCPBG00000006753	CSTF3	100	90.808	Chrysemys_picta_bellii
ENSPREG00000013549	cstf3	99	61.997	ENSCING00000006401	-	99	62.136	Ciona_intestinalis
ENSPREG00000013549	cstf3	98	61.744	ENSCSAVG00000004851	-	100	61.744	Ciona_savignyi
ENSPREG00000013549	cstf3	100	90.808	ENSCANG00000035468	CSTF3	100	90.880	Colobus_angolensis_palliatus
ENSPREG00000013549	cstf3	100	90.669	ENSCGRG00001014773	Cstf3	100	90.669	Cricetulus_griseus_chok1gshd
ENSPREG00000013549	cstf3	100	90.669	ENSCGRG00000004142	Cstf3	100	90.669	Cricetulus_griseus_crigri
ENSPREG00000013549	cstf3	100	95.670	ENSCSEG00000014283	cstf3	100	95.670	Cynoglossus_semilaevis
ENSPREG00000013549	cstf3	100	98.603	ENSCVAG00000019739	cstf3	100	98.603	Cyprinodon_variegatus
ENSPREG00000013549	cstf3	100	93.863	ENSDARG00000018904	cstf3	100	93.863	Danio_rerio
ENSPREG00000013549	cstf3	99	91.049	ENSDNOG00000007366	CSTF3	99	91.049	Dasypus_novemcinctus
ENSPREG00000013549	cstf3	99	83.780	ENSDORG00000005898	Cstf3	99	83.780	Dipodomys_ordii
ENSPREG00000013549	cstf3	99	55.902	FBgn0003559	su(f)	99	55.902	Drosophila_melanogaster
ENSPREG00000013549	cstf3	85	90.134	ENSETEG00000017097	CSTF3	90	85.670	Echinops_telfairi
ENSPREG00000013549	cstf3	84	75.338	ENSEBUG00000015459	cstf3	96	75.338	Eptatretus_burgeri
ENSPREG00000013549	cstf3	99	89.972	ENSEASG00005019884	CSTF3	96	96.214	Equus_asinus_asinus
ENSPREG00000013549	cstf3	99	89.972	ENSECAG00000023338	CSTF3	96	96.214	Equus_caballus
ENSPREG00000013549	cstf3	100	85.933	ENSEEUG00000015167	CSTF3	100	85.933	Erinaceus_europaeus
ENSPREG00000013549	cstf3	100	94.142	ENSELUG00000023393	cstf3	100	94.142	Esox_lucius
ENSPREG00000013549	cstf3	100	90.947	ENSFCAG00000030711	CSTF3	100	90.947	Felis_catus
ENSPREG00000013549	cstf3	93	93.223	ENSFALG00000010764	CSTF3	100	90.169	Ficedula_albicollis
ENSPREG00000013549	cstf3	100	90.947	ENSFDAG00000012082	CSTF3	100	90.947	Fukomys_damarensis
ENSPREG00000013549	cstf3	100	98.464	ENSFHEG00000020623	cstf3	100	98.464	Fundulus_heteroclitus
ENSPREG00000013549	cstf3	100	93.175	ENSGMOG00000012275	cstf3	100	93.175	Gadus_morhua
ENSPREG00000013549	cstf3	100	90.669	ENSGALG00000011685	CSTF3	100	90.669	Gallus_gallus
ENSPREG00000013549	cstf3	100	99.302	ENSGAFG00000002181	cstf3	100	99.302	Gambusia_affinis
ENSPREG00000013549	cstf3	100	95.950	ENSGACG00000015997	cstf3	100	95.950	Gasterosteus_aculeatus
ENSPREG00000013549	cstf3	100	90.808	ENSGAGG00000006200	CSTF3	100	90.808	Gopherus_agassizii
ENSPREG00000013549	cstf3	99	86.944	ENSGGOG00000026591	CSTF3	96	93.607	Gorilla_gorilla
ENSPREG00000013549	cstf3	100	97.067	ENSHBUG00000016656	cstf3	100	97.067	Haplochromis_burtoni
ENSPREG00000013549	cstf3	100	90.808	ENSHGLG00000017834	CSTF3	100	90.808	Heterocephalus_glaber_female
ENSPREG00000013549	cstf3	100	90.808	ENSHGLG00100018042	CSTF3	100	90.808	Heterocephalus_glaber_male
ENSPREG00000013549	cstf3	100	92.978	ENSHCOG00000015218	cstf3	100	92.978	Hippocampus_comes
ENSPREG00000013549	cstf3	100	92.887	ENSIPUG00000013170	CSTF3	100	92.887	Ictalurus_punctatus
ENSPREG00000013549	cstf3	100	90.808	ENSSTOG00000013306	CSTF3	100	90.808	Ictidomys_tridecemlineatus
ENSPREG00000013549	cstf3	99	81.215	ENSJJAG00000018430	Cstf3	98	81.215	Jaculus_jaculus
ENSPREG00000013549	cstf3	100	95.112	ENSKMAG00000010916	cstf3	100	95.112	Kryptolebias_marmoratus
ENSPREG00000013549	cstf3	100	95.670	ENSLBEG00000002306	cstf3	100	95.670	Labrus_bergylta
ENSPREG00000013549	cstf3	100	89.819	ENSLACG00000017296	CSTF3	100	89.819	Latimeria_chalumnae
ENSPREG00000013549	cstf3	100	93.872	ENSLOCG00000004415	cstf3	100	93.872	Lepisosteus_oculatus
ENSPREG00000013549	cstf3	100	90.669	ENSLAFG00000008712	CSTF3	100	90.669	Loxodonta_africana
ENSPREG00000013549	cstf3	100	90.808	ENSMFAG00000029516	CSTF3	100	90.880	Macaca_fascicularis
ENSPREG00000013549	cstf3	100	90.808	ENSMMUG00000002542	CSTF3	100	90.808	Macaca_mulatta
ENSPREG00000013549	cstf3	100	90.808	ENSMNEG00000021807	CSTF3	100	90.880	Macaca_nemestrina
ENSPREG00000013549	cstf3	100	90.808	ENSMLEG00000039594	CSTF3	97	93.987	Mandrillus_leucophaeus
ENSPREG00000013549	cstf3	100	96.508	ENSMAMG00000020423	cstf3	100	96.508	Mastacembelus_armatus
ENSPREG00000013549	cstf3	100	96.927	ENSMZEG00005012082	cstf3	100	96.927	Maylandia_zebra
ENSPREG00000013549	cstf3	100	90.529	ENSMGAG00000001383	CSTF3	100	90.529	Meleagris_gallopavo
ENSPREG00000013549	cstf3	100	90.529	ENSMAUG00000002487	Cstf3	100	90.529	Mesocricetus_auratus
ENSPREG00000013549	cstf3	100	90.808	ENSMICG00000004784	CSTF3	100	90.880	Microcebus_murinus
ENSPREG00000013549	cstf3	100	90.669	ENSMOCG00000017583	Cstf3	100	90.669	Microtus_ochrogaster
ENSPREG00000013549	cstf3	99	96.328	ENSMMOG00000016026	cstf3	95	96.328	Mola_mola
ENSPREG00000013549	cstf3	100	80.501	ENSMODG00000025205	-	100	80.501	Monodelphis_domestica
ENSPREG00000013549	cstf3	100	90.947	ENSMODG00000009745	-	100	90.947	Monodelphis_domestica
ENSPREG00000013549	cstf3	100	96.927	ENSMALG00000012050	cstf3	100	96.927	Monopterus_albus
ENSPREG00000013549	cstf3	100	90.669	MGP_CAROLIEiJ_G0024026	Cstf3	100	90.669	Mus_caroli
ENSPREG00000013549	cstf3	100	90.669	ENSMUSG00000027176	Cstf3	100	90.669	Mus_musculus
ENSPREG00000013549	cstf3	100	90.669	MGP_PahariEiJ_G0025464	Cstf3	100	90.669	Mus_pahari
ENSPREG00000013549	cstf3	100	90.669	MGP_SPRETEiJ_G0024939	Cstf3	100	90.669	Mus_spretus
ENSPREG00000013549	cstf3	100	90.669	ENSMPUG00000011457	CSTF3	100	90.669	Mustela_putorius_furo
ENSPREG00000013549	cstf3	99	91.384	ENSMLUG00000003073	-	99	91.384	Myotis_lucifugus
ENSPREG00000013549	cstf3	100	88.162	ENSMLUG00000026022	-	100	88.162	Myotis_lucifugus
ENSPREG00000013549	cstf3	100	90.669	ENSNGAG00000010677	Cstf3	100	90.669	Nannospalax_galili
ENSPREG00000013549	cstf3	88	96.950	ENSNBRG00000007345	cstf3	100	96.950	Neolamprologus_brichardi
ENSPREG00000013549	cstf3	100	90.808	ENSNLEG00000017901	CSTF3	97	96.119	Nomascus_leucogenys
ENSPREG00000013549	cstf3	73	90.057	ENSMEUG00000005640	-	100	90.057	Notamacropus_eugenii
ENSPREG00000013549	cstf3	68	88.158	ENSOPRG00000000199	-	67	88.158	Ochotona_princeps
ENSPREG00000013549	cstf3	100	90.808	ENSODEG00000016737	-	100	90.808	Octodon_degus
ENSPREG00000013549	cstf3	100	73.975	ENSODEG00000006311	-	97	79.403	Octodon_degus
ENSPREG00000013549	cstf3	100	96.927	ENSONIG00000005563	cstf3	100	96.927	Oreochromis_niloticus
ENSPREG00000013549	cstf3	90	90.462	ENSOANG00000015140	CSTF3	100	90.462	Ornithorhynchus_anatinus
ENSPREG00000013549	cstf3	100	90.529	ENSOCUG00000015417	CSTF3	100	90.529	Oryctolagus_cuniculus
ENSPREG00000013549	cstf3	100	95.251	ENSORLG00000009762	cstf3	100	95.251	Oryzias_latipes
ENSPREG00000013549	cstf3	100	95.251	ENSORLG00020005540	cstf3	100	95.251	Oryzias_latipes_hni
ENSPREG00000013549	cstf3	100	95.112	ENSORLG00015003551	cstf3	100	95.112	Oryzias_latipes_hsok
ENSPREG00000013549	cstf3	100	95.810	ENSOMEG00000003848	cstf3	100	95.810	Oryzias_melastigma
ENSPREG00000013549	cstf3	100	90.430	ENSOGAG00000010229	CSTF3	100	90.430	Otolemur_garnettii
ENSPREG00000013549	cstf3	90	90.980	ENSOARG00000017271	CSTF3	99	90.980	Ovis_aries
ENSPREG00000013549	cstf3	99	89.383	ENSPPAG00000027358	CSTF3	99	89.383	Pan_paniscus
ENSPREG00000013549	cstf3	100	90.947	ENSPPRG00000016852	CSTF3	100	90.947	Panthera_pardus
ENSPREG00000013549	cstf3	100	90.947	ENSPTIG00000008716	CSTF3	100	90.947	Panthera_tigris_altaica
ENSPREG00000013549	cstf3	100	90.808	ENSPTRG00000003485	CSTF3	100	90.808	Pan_troglodytes
ENSPREG00000013549	cstf3	100	90.808	ENSPANG00000013722	CSTF3	97	93.987	Papio_anubis
ENSPREG00000013549	cstf3	100	93.724	ENSPKIG00000023648	cstf3	100	93.724	Paramormyrops_kingsleyae
ENSPREG00000013549	cstf3	100	90.808	ENSPSIG00000009173	CSTF3	100	90.808	Pelodiscus_sinensis
ENSPREG00000013549	cstf3	77	96.898	ENSPMGG00000000164	cstf3	99	96.898	Periophthalmus_magnuspinnatus
ENSPREG00000013549	cstf3	100	90.529	ENSPEMG00000011481	Cstf3	100	90.529	Peromyscus_maniculatus_bairdii
ENSPREG00000013549	cstf3	99	79.296	ENSPMAG00000007282	cstf3	100	78.889	Petromyzon_marinus
ENSPREG00000013549	cstf3	99	76.438	ENSPCIG00000030419	-	89	76.718	Phascolarctos_cinereus
ENSPREG00000013549	cstf3	100	88.178	ENSPCIG00000026406	-	100	91.200	Phascolarctos_cinereus
ENSPREG00000013549	cstf3	100	99.860	ENSPFOG00000017239	cstf3	100	99.860	Poecilia_formosa
ENSPREG00000013549	cstf3	100	99.721	ENSPLAG00000009456	cstf3	100	99.721	Poecilia_latipinna
ENSPREG00000013549	cstf3	100	99.860	ENSPMEG00000010320	cstf3	100	99.860	Poecilia_mexicana
ENSPREG00000013549	cstf3	100	90.808	ENSPPYG00000003375	CSTF3	100	90.808	Pongo_abelii
ENSPREG00000013549	cstf3	71	95.819	ENSPCAG00000008025	-	71	95.819	Procavia_capensis
ENSPREG00000013549	cstf3	100	87.129	ENSPCOG00000014417	CSTF3	100	87.129	Propithecus_coquereli
ENSPREG00000013549	cstf3	100	85.655	ENSPVAG00000002350	CSTF3	100	85.655	Pteropus_vampyrus
ENSPREG00000013549	cstf3	100	97.067	ENSPNYG00000018259	cstf3	100	97.067	Pundamilia_nyererei
ENSPREG00000013549	cstf3	100	94.003	ENSPNAG00000020182	cstf3	100	94.003	Pygocentrus_nattereri
ENSPREG00000013549	cstf3	88	90.400	ENSRNOG00000012089	Cstf3	100	90.400	Rattus_norvegicus
ENSPREG00000013549	cstf3	99	89.972	ENSRBIG00000044258	CSTF3	100	90.880	Rhinopithecus_bieti
ENSPREG00000013549	cstf3	100	90.808	ENSRROG00000043450	CSTF3	100	90.880	Rhinopithecus_roxellana
ENSPREG00000013549	cstf3	100	90.808	ENSSBOG00000024764	CSTF3	98	96.214	Saimiri_boliviensis_boliviensis
ENSPREG00000013549	cstf3	100	81.476	ENSSHAG00000003135	-	99	81.476	Sarcophilus_harrisii
ENSPREG00000013549	cstf3	99	91.525	ENSSHAG00000018128	-	99	91.525	Sarcophilus_harrisii
ENSPREG00000013549	cstf3	100	94.003	ENSSFOG00015022133	cstf3	100	94.003	Scleropages_formosus
ENSPREG00000013549	cstf3	100	95.950	ENSSMAG00000002197	cstf3	100	95.950	Scophthalmus_maximus
ENSPREG00000013549	cstf3	100	97.067	ENSSDUG00000020426	cstf3	100	97.067	Seriola_dumerili
ENSPREG00000013549	cstf3	100	97.067	ENSSLDG00000025649	cstf3	100	97.067	Seriola_lalandi_dorsalis
ENSPREG00000013549	cstf3	100	90.669	ENSSARG00000000391	CSTF3	100	90.669	Sorex_araneus
ENSPREG00000013549	cstf3	96	90.738	ENSSPUG00000010546	CSTF3	100	90.738	Sphenodon_punctatus
ENSPREG00000013549	cstf3	100	97.067	ENSSPAG00000004958	cstf3	100	97.067	Stegastes_partitus
ENSPREG00000013549	cstf3	99	90.603	ENSSSCG00000040954	CSTF3	99	90.603	Sus_scrofa
ENSPREG00000013549	cstf3	99	90.960	ENSTGUG00000005010	CSTF3	100	90.960	Taeniopygia_guttata
ENSPREG00000013549	cstf3	100	95.391	ENSTRUG00000004959	cstf3	100	95.391	Takifugu_rubripes
ENSPREG00000013549	cstf3	99	96.328	ENSTNIG00000013811	cstf3	99	96.328	Tetraodon_nigroviridis
ENSPREG00000013549	cstf3	89	88.474	ENSTBEG00000001544	CSTF3	90	88.474	Tupaia_belangeri
ENSPREG00000013549	cstf3	100	88.022	ENSTTRG00000016366	CSTF3	100	88.022	Tursiops_truncatus
ENSPREG00000013549	cstf3	99	91.102	ENSUMAG00000018971	CSTF3	100	90.560	Ursus_maritimus
ENSPREG00000013549	cstf3	100	90.669	ENSVPAG00000007800	CSTF3	100	90.669	Vicugna_pacos
ENSPREG00000013549	cstf3	99	91.384	ENSVVUG00000014938	CSTF3	100	90.880	Vulpes_vulpes
ENSPREG00000013549	cstf3	66	42.116	ENSXETG00000017946	-	99	42.116	Xenopus_tropicalis
ENSPREG00000013549	cstf3	88	75.469	ENSXETG00000021399	cstf3	100	76.537	Xenopus_tropicalis
ENSPREG00000013549	cstf3	88	98.876	ENSXCOG00000011741	cstf3	100	98.876	Xiphophorus_couchianus
ENSPREG00000013549	cstf3	100	99.302	ENSXMAG00000009545	cstf3	100	99.302	Xiphophorus_maculatus