EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPREG00000013962 (Gene tree)
Gene ID: 103471972
Gene Symbol: rab42a
Alias: -
Full Name: ras-related protein Rab-39B-like
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Plus strand
Length: 5404 bases
Position: chrLG11:2108857-2114260
Accession: 103471972
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000020650	MMR_HSR1	PF01926.23	5.1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000020868	-	657	XM_008421298	ENSPREP00000020650	218 (aa)	XP_008419520	UPI0004A46B5F

Gene Model

Click here to download ENSPREG00000013962's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000013962's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPREG00000013962	rab42a	75	38.415	ENSPREG00000010146	rab5c	74	38.415
ENSPREG00000013962	rab42a	78	43.860	ENSPREG00000017517	zgc:171927	79	43.860
ENSPREG00000013962	rab42a	83	41.667	ENSPREG00000014634	rab30	88	41.667
ENSPREG00000013962	rab42a	78	34.118	ENSPREG00000006363	rras	85	34.118
ENSPREG00000013962	rab42a	79	44.186	ENSPREG00000004889	-	81	44.186
ENSPREG00000013962	rab42a	75	40.237	ENSPREG00000003221	rab33a	50	40.116
ENSPREG00000013962	rab42a	72	37.736	ENSPREG00000022241	si:dkey-13a21.4	77	37.736
ENSPREG00000013962	rab42a	84	41.530	ENSPREG00000017324	rab11al	84	41.530
ENSPREG00000013962	rab42a	69	34.437	ENSPREG00000019341	hrasb	85	33.537
ENSPREG00000013962	rab42a	100	55.505	ENSPREG00000007129	RAB39B	100	55.505
ENSPREG00000013962	rab42a	69	37.500	ENSPREG00000016102	si:ch73-116o1.2	78	37.195
ENSPREG00000013962	rab42a	72	38.509	ENSPREG00000001832	rab9a	79	38.509
ENSPREG00000013962	rab42a	85	41.935	ENSPREG00000006357	rab11ba	66	41.935
ENSPREG00000013962	rab42a	83	32.967	ENSPREG00000010752	rheb	93	32.967
ENSPREG00000013962	rab42a	77	41.667	ENSPREG00000010284	rab15	78	41.667
ENSPREG00000013962	rab42a	67	45.270	ENSPREG00000000880	rab33ba	62	45.270
ENSPREG00000013962	rab42a	76	41.212	ENSPREG00000005923	rab18a	66	41.212
ENSPREG00000013962	rab42a	67	42.763	ENSPREG00000001864	-	65	42.763
ENSPREG00000013962	rab42a	78	36.686	ENSPREG00000022167	-	85	36.310
ENSPREG00000013962	rab42a	83	41.667	ENSPREG00000017337	rab25b	85	41.667
ENSPREG00000013962	rab42a	86	46.277	ENSPREG00000014888	rab2a	88	46.277
ENSPREG00000013962	rab42a	78	40.698	ENSPREG00000017487	rab12	70	40.698
ENSPREG00000013962	rab42a	75	31.928	ENSPREG00000014761	rabl2	79	31.928
ENSPREG00000013962	rab42a	72	39.490	ENSPREG00000021505	rab6a	75	39.490
ENSPREG00000013962	rab42a	83	33.880	ENSPREG00000009813	rab34b	71	33.880
ENSPREG00000013962	rab42a	79	43.023	ENSPREG00000017567	rab13	85	43.023
ENSPREG00000013962	rab42a	100	54.128	ENSPREG00000009597	-	100	54.128
ENSPREG00000013962	rab42a	79	45.930	ENSPREG00000005323	si:dkey-16l2.16	81	45.930
ENSPREG00000013962	rab42a	74	34.337	ENSPREG00000017750	RAB7A	79	34.337
ENSPREG00000013962	rab42a	61	34.091	ENSPREG00000008951	rab34a	53	34.091
ENSPREG00000013962	rab42a	84	39.674	ENSPREG00000003616	rab1ba	91	39.674
ENSPREG00000013962	rab42a	67	42.568	ENSPREG00000007017	zgc:101559	63	42.568
ENSPREG00000013962	rab42a	75	38.095	ENSPREG00000006970	rab9b	75	38.095
ENSPREG00000013962	rab42a	75	34.756	ENSPREG00000010920	rab22a	84	34.756
ENSPREG00000013962	rab42a	88	35.938	ENSPREG00000010154	rab4a	89	35.938
ENSPREG00000013962	rab42a	78	41.176	ENSPREG00000006119	rab25a	85	42.143
ENSPREG00000013962	rab42a	55	31.933	ENSPREG00000016664	rap2b	93	31.818
ENSPREG00000013962	rab42a	76	40.606	ENSPREG00000019783	RAB15	78	40.606
ENSPREG00000013962	rab42a	72	38.217	ENSPREG00000009535	RAB41	73	38.217
ENSPREG00000013962	rab42a	85	40.860	ENSPREG00000009605	rab11a	86	40.860
ENSPREG00000013962	rab42a	87	35.263	ENSPREG00000015480	rab6ba	91	35.263
ENSPREG00000013962	rab42a	77	37.427	ENSPREG00000020276	RAB29	83	37.427
ENSPREG00000013962	rab42a	65	35.461	ENSPREG00000022509	rab23	74	34.641
ENSPREG00000013962	rab42a	69	34.437	ENSPREG00000018287	KRAS	98	31.937
ENSPREG00000013962	rab42a	85	41.398	ENSPREG00000014269	rab11bb	84	41.398
ENSPREG00000013962	rab42a	75	39.881	ENSPREG00000012522	-	83	39.881
ENSPREG00000013962	rab42a	100	39.908	ENSPREG00000020321	rab1ab	100	39.908
ENSPREG00000013962	rab42a	74	34.337	ENSPREG00000012148	RAB7A	79	34.337
ENSPREG00000013962	rab42a	77	31.737	ENSPREG00000012803	rhebl1	88	31.737
ENSPREG00000013962	rab42a	98	36.744	ENSPREG00000017344	-	97	36.744
ENSPREG00000013962	rab42a	85	41.398	ENSPREG00000006336	-	84	41.398

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000013962	rab42a	100	94.954	ENSAPOG00000009188	rab42a	100	94.954	Acanthochromis_polyacanthus
ENSPREG00000013962	rab42a	100	94.954	ENSACIG00000003102	rab42a	100	94.954	Amphilophus_citrinellus
ENSPREG00000013962	rab42a	100	95.872	ENSAOCG00000012921	rab42a	83	95.872	Amphiprion_ocellaris
ENSPREG00000013962	rab42a	100	95.872	ENSAPEG00000007713	rab42a	83	95.872	Amphiprion_percula
ENSPREG00000013962	rab42a	100	93.119	ENSATEG00000009052	rab42a	100	93.119	Anabas_testudineus
ENSPREG00000013962	rab42a	100	94.037	ENSACLG00000007514	rab42a	100	94.037	Astatotilapia_calliptera
ENSPREG00000013962	rab42a	100	88.532	ENSAMXG00000032729	rab42a	100	88.532	Astyanax_mexicanus
ENSPREG00000013962	rab42a	100	92.661	ENSCSEG00000010582	rab42a	100	92.661	Cynoglossus_semilaevis
ENSPREG00000013962	rab42a	100	89.908	ENSDARG00000034215	rab42a	100	89.908	Danio_rerio
ENSPREG00000013962	rab42a	90	49.239	ENSDARG00000102580	CU571310.1	93	49.239	Danio_rerio
ENSPREG00000013962	rab42a	100	88.532	ENSELUG00000010345	rab42a	100	88.532	Esox_lucius
ENSPREG00000013962	rab42a	100	98.165	ENSFHEG00000013106	rab42a	100	98.165	Fundulus_heteroclitus
ENSPREG00000013962	rab42a	100	100.000	ENSGAFG00000002141	rab42a	100	100.000	Gambusia_affinis
ENSPREG00000013962	rab42a	100	94.037	ENSHBUG00000015126	rab42a	82	94.037	Haplochromis_burtoni
ENSPREG00000013962	rab42a	100	85.321	ENSIPUG00000011376	rab42a	100	85.321	Ictalurus_punctatus
ENSPREG00000013962	rab42a	100	96.330	ENSKMAG00000007267	rab42a	100	96.330	Kryptolebias_marmoratus
ENSPREG00000013962	rab42a	100	95.413	ENSLBEG00000001193	rab42a	100	95.413	Labrus_bergylta
ENSPREG00000013962	rab42a	100	64.679	ENSLACG00000012755	-	100	64.679	Latimeria_chalumnae
ENSPREG00000013962	rab42a	100	49.772	ENSLOCG00000015825	-	99	49.772	Lepisosteus_oculatus
ENSPREG00000013962	rab42a	100	80.734	ENSLOCG00000003453	rab42a	100	80.734	Lepisosteus_oculatus
ENSPREG00000013962	rab42a	100	95.872	ENSMAMG00000002296	rab42a	100	95.872	Mastacembelus_armatus
ENSPREG00000013962	rab42a	100	94.037	ENSMZEG00005012460	rab42a	82	94.037	Maylandia_zebra
ENSPREG00000013962	rab42a	100	91.743	ENSMMOG00000014358	rab42a	100	91.743	Mola_mola
ENSPREG00000013962	rab42a	100	94.495	ENSNBRG00000021487	rab42a	82	94.495	Neolamprologus_brichardi
ENSPREG00000013962	rab42a	100	95.413	ENSORLG00000022335	rab42a	100	95.413	Oryzias_latipes
ENSPREG00000013962	rab42a	100	95.413	ENSORLG00020013895	rab42a	100	95.413	Oryzias_latipes_hni
ENSPREG00000013962	rab42a	100	95.413	ENSORLG00015004273	rab42a	100	95.413	Oryzias_latipes_hsok
ENSPREG00000013962	rab42a	100	95.413	ENSOMEG00000020418	rab42a	100	95.413	Oryzias_melastigma
ENSPREG00000013962	rab42a	89	47.938	ENSPKIG00000015234	-	93	47.938	Paramormyrops_kingsleyae
ENSPREG00000013962	rab42a	100	76.712	ENSPKIG00000021215	-	100	76.712	Paramormyrops_kingsleyae
ENSPREG00000013962	rab42a	90	95.939	ENSPMGG00000024112	rab42a	90	95.939	Periophthalmus_magnuspinnatus
ENSPREG00000013962	rab42a	100	99.083	ENSPFOG00000004838	rab42a	82	99.083	Poecilia_formosa
ENSPREG00000013962	rab42a	100	99.541	ENSPLAG00000005628	rab42a	100	99.541	Poecilia_latipinna
ENSPREG00000013962	rab42a	100	99.083	ENSPMEG00000019497	rab42a	100	99.083	Poecilia_mexicana
ENSPREG00000013962	rab42a	100	94.037	ENSPNYG00000010325	rab42a	82	94.037	Pundamilia_nyererei
ENSPREG00000013962	rab42a	100	88.073	ENSPNAG00000016567	rab42a	100	88.073	Pygocentrus_nattereri
ENSPREG00000013962	rab42a	100	45.662	ENSSFOG00015016000	-	97	45.662	Scleropages_formosus
ENSPREG00000013962	rab42a	100	83.486	ENSSFOG00015020732	rab42a	100	83.486	Scleropages_formosus
ENSPREG00000013962	rab42a	100	93.578	ENSSMAG00000020311	rab42a	100	93.578	Scophthalmus_maximus
ENSPREG00000013962	rab42a	100	96.330	ENSSDUG00000011851	rab42a	100	96.330	Seriola_dumerili
ENSPREG00000013962	rab42a	100	96.330	ENSSLDG00000020354	rab42a	100	96.330	Seriola_lalandi_dorsalis
ENSPREG00000013962	rab42a	100	95.872	ENSSPAG00000016167	rab42a	100	95.872	Stegastes_partitus
ENSPREG00000013962	rab42a	100	94.954	ENSTRUG00000010224	rab42a	100	94.954	Takifugu_rubripes
ENSPREG00000013962	rab42a	100	99.541	ENSXCOG00000003428	rab42a	100	99.541	Xiphophorus_couchianus
ENSPREG00000013962	rab42a	100	99.541	ENSXMAG00000028376	rab42a	100	99.541	Xiphophorus_maculatus