EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPREG00000014998 (Gene tree)
Gene ID: 103457080
Gene Symbol: vars2
Alias: si:ch211-152p11.2
Full Name: valine--tRNA ligase%2C mitochondrial-like
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Minus strand
Length: 22271 bases
Position: chrLG2:21070007-21092277
Accession: 103457080
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000022249	tRNA-synt_1g	PF09334.11	4.8e-15	1	1
ENSPREP00000022249	Anticodon_1	PF08264.13	4.9e-33	1	1
ENSPREP00000022249	tRNA-synt_1	PF00133.22	1.4e-153	1	3
ENSPREP00000022249	tRNA-synt_1	PF00133.22	1.4e-153	2	3
ENSPREP00000022249	tRNA-synt_1	PF00133.22	1.4e-153	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000022481	-	3048	XM_017309157	ENSPREP00000022249	1015 (aa)	XP_017164646	-

Gene Model

Click here to download ENSPREG00000014998's gene model file

Pathways

Pathway ID	Pathway Name	Source
pret00970	Aminoacyl-tRNA biosynthesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000014998's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPREG00000014998	vars2	91	43.634	ENSPREG00000013264	vars	78	43.634

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000014998	vars2	93	70.850	ENSAPOG00000007396	vars2	97	68.815	Acanthochromis_polyacanthus
ENSPREG00000014998	vars2	94	46.368	ENSAMEG00000012997	VARS2	86	47.580	Ailuropoda_melanoleuca
ENSPREG00000014998	vars2	99	67.751	ENSACIG00000004344	vars2	97	67.751	Amphilophus_citrinellus
ENSPREG00000014998	vars2	93	70.648	ENSAOCG00000000476	vars2	97	68.531	Amphiprion_ocellaris
ENSPREG00000014998	vars2	93	70.648	ENSAPEG00000008646	vars2	95	68.531	Amphiprion_percula
ENSPREG00000014998	vars2	93	70.779	ENSATEG00000012291	vars2	97	68.661	Anabas_testudineus
ENSPREG00000014998	vars2	91	49.641	ENSACAG00000022093	VARS2	87	49.641	Anolis_carolinensis
ENSPREG00000014998	vars2	94	46.054	ENSANAG00000038018	VARS2	89	47.363	Aotus_nancymaae
ENSPREG00000014998	vars2	99	66.254	ENSACLG00000018673	vars2	97	66.254	Astatotilapia_calliptera
ENSPREG00000014998	vars2	95	62.055	ENSAMXG00000017773	vars2	93	63.285	Astyanax_mexicanus
ENSPREG00000014998	vars2	94	47.295	ENSBTAG00000010698	VARS2	89	47.439	Bos_taurus
ENSPREG00000014998	vars2	94	45.954	ENSCJAG00000019826	VARS2	89	47.363	Callithrix_jacchus
ENSPREG00000014998	vars2	95	46.275	ENSCAFG00000000454	VARS2	88	47.884	Canis_familiaris
ENSPREG00000014998	vars2	86	48.966	ENSCAFG00020019387	VARS2	89	50.000	Canis_lupus_dingo
ENSPREG00000014998	vars2	94	47.006	ENSCHIG00000007847	VARS2	89	47.551	Capra_hircus
ENSPREG00000014998	vars2	94	47.638	ENSTSYG00000009904	VARS2	89	48.554	Carlito_syrichta
ENSPREG00000014998	vars2	86	47.907	ENSCAPG00000017770	VARS2	95	47.907	Cavia_aperea
ENSPREG00000014998	vars2	95	46.589	ENSCPOG00000021834	VARS2	89	47.844	Cavia_porcellus
ENSPREG00000014998	vars2	94	46.054	ENSCCAG00000037907	VARS2	89	47.466	Cebus_capucinus
ENSPREG00000014998	vars2	94	46.468	ENSCATG00000032554	VARS2	89	47.889	Cercocebus_atys
ENSPREG00000014998	vars2	95	46.680	ENSCLAG00000002889	VARS2	88	48.441	Chinchilla_lanigera
ENSPREG00000014998	vars2	94	46.766	ENSCSAG00000008327	VARS2	89	48.198	Chlorocebus_sabaeus
ENSPREG00000014998	vars2	93	49.592	ENSCPBG00000021502	VARS2	95	49.592	Chrysemys_picta_bellii
ENSPREG00000014998	vars2	94	46.368	ENSCANG00000014991	VARS2	88	47.786	Colobus_angolensis_palliatus
ENSPREG00000014998	vars2	94	46.787	ENSCGRG00001021535	Vars2	88	48.129	Cricetulus_griseus_chok1gshd
ENSPREG00000014998	vars2	94	46.787	ENSCGRG00000014112	Vars2	88	48.129	Cricetulus_griseus_crigri
ENSPREG00000014998	vars2	85	75.882	ENSCSEG00000015432	vars2	89	75.882	Cynoglossus_semilaevis
ENSPREG00000014998	vars2	69	77.731	ENSCVAG00000017765	vars2	98	77.731	Cyprinodon_variegatus
ENSPREG00000014998	vars2	99	60.286	ENSDARG00000056717	vars2	97	60.286	Danio_rerio
ENSPREG00000014998	vars2	77	48.092	ENSDORG00000008516	Vars2	84	48.092	Dipodomys_ordii
ENSPREG00000014998	vars2	95	42.085	ENSETEG00000014844	VARS2	88	43.451	Echinops_telfairi
ENSPREG00000014998	vars2	93	46.123	ENSEASG00005019997	VARS2	94	47.836	Equus_asinus_asinus
ENSPREG00000014998	vars2	93	46.425	ENSECAG00000018202	VARS2	89	47.477	Equus_caballus
ENSPREG00000014998	vars2	99	59.001	ENSELUG00000017824	vars2	91	61.871	Esox_lucius
ENSPREG00000014998	vars2	96	46.401	ENSFCAG00000010531	VARS2	90	47.475	Felis_catus
ENSPREG00000014998	vars2	94	46.766	ENSFDAG00000017216	VARS2	89	47.942	Fukomys_damarensis
ENSPREG00000014998	vars2	95	71.175	ENSFHEG00000013932	vars2	98	71.175	Fundulus_heteroclitus
ENSPREG00000014998	vars2	91	61.546	ENSGMOG00000018960	vars2	99	61.546	Gadus_morhua
ENSPREG00000014998	vars2	95	87.422	ENSGAFG00000004737	vars2	98	87.422	Gambusia_affinis
ENSPREG00000014998	vars2	93	68.094	ENSGACG00000001464	vars2	97	68.094	Gasterosteus_aculeatus
ENSPREG00000014998	vars2	91	50.207	ENSGAGG00000011652	VARS2	95	50.207	Gopherus_agassizii
ENSPREG00000014998	vars2	95	46.832	ENSGGOG00000014587	VARS2	89	48.156	Gorilla_gorilla
ENSPREG00000014998	vars2	99	64.519	ENSHBUG00000002448	vars2	97	64.519	Haplochromis_burtoni
ENSPREG00000014998	vars2	95	45.642	ENSHGLG00000012886	VARS2	85	47.004	Heterocephalus_glaber_female
ENSPREG00000014998	vars2	95	45.544	ENSHGLG00100016535	VARS2	89	46.901	Heterocephalus_glaber_male
ENSPREG00000014998	vars2	71	70.941	ENSHCOG00000017907	vars2	97	70.941	Hippocampus_comes
ENSPREG00000014998	vars2	93	61.996	ENSIPUG00000015573	Vars2	94	61.149	Ictalurus_punctatus
ENSPREG00000014998	vars2	94	46.332	ENSSTOG00000009924	VARS2	89	47.071	Ictidomys_tridecemlineatus
ENSPREG00000014998	vars2	92	47.053	ENSJJAG00000011144	Vars2	90	46.721	Jaculus_jaculus
ENSPREG00000014998	vars2	99	69.442	ENSKMAG00000001393	vars2	97	69.660	Kryptolebias_marmoratus
ENSPREG00000014998	vars2	99	64.442	ENSLBEG00000011949	vars2	97	64.627	Labrus_bergylta
ENSPREG00000014998	vars2	51	67.263	ENSLBEG00000005480	-	81	67.210	Labrus_bergylta
ENSPREG00000014998	vars2	90	45.915	ENSLACG00000001576	-	94	45.075	Latimeria_chalumnae
ENSPREG00000014998	vars2	94	46.627	ENSLAFG00000015183	VARS2	89	47.551	Loxodonta_africana
ENSPREG00000014998	vars2	94	46.254	ENSMFAG00000042367	VARS2	89	47.673	Macaca_fascicularis
ENSPREG00000014998	vars2	94	46.354	ENSMMUG00000018609	VARS2	89	47.777	Macaca_mulatta
ENSPREG00000014998	vars2	94	46.254	ENSMNEG00000043163	VARS2	89	47.880	Macaca_nemestrina
ENSPREG00000014998	vars2	94	47.147	ENSMLEG00000041728	VARS2	86	47.992	Mandrillus_leucophaeus
ENSPREG00000014998	vars2	95	67.925	ENSMAMG00000020339	vars2	91	68.040	Mastacembelus_armatus
ENSPREG00000014998	vars2	99	66.158	ENSMZEG00005017669	vars2	97	66.158	Maylandia_zebra
ENSPREG00000014998	vars2	97	46.498	ENSMAUG00000018946	Vars2	89	48.144	Mesocricetus_auratus
ENSPREG00000014998	vars2	81	49.654	ENSMICG00000005365	VARS2	92	51.322	Microcebus_murinus
ENSPREG00000014998	vars2	96	44.031	ENSMOCG00000014607	Vars2	84	50.837	Microtus_ochrogaster
ENSPREG00000014998	vars2	93	66.903	ENSMMOG00000012122	vars2	96	65.421	Mola_mola
ENSPREG00000014998	vars2	96	45.393	ENSMODG00000015848	VARS2	87	46.956	Monodelphis_domestica
ENSPREG00000014998	vars2	93	67.821	ENSMALG00000009217	vars2	96	67.821	Monopterus_albus
ENSPREG00000014998	vars2	96	46.881	MGP_CAROLIEiJ_G0021529	Vars2	96	54.386	Mus_caroli
ENSPREG00000014998	vars2	96	46.784	ENSMUSG00000038838	Vars2	92	55.474	Mus_musculus
ENSPREG00000014998	vars2	94	47.316	MGP_PahariEiJ_G0020523	Vars2	92	55.292	Mus_pahari
ENSPREG00000014998	vars2	96	46.784	MGP_SPRETEiJ_G0022436	Vars2	96	54.211	Mus_spretus
ENSPREG00000014998	vars2	95	46.819	ENSMPUG00000011643	VARS2	88	48.233	Mustela_putorius_furo
ENSPREG00000014998	vars2	93	46.339	ENSMLUG00000002356	VARS2	86	47.023	Myotis_lucifugus
ENSPREG00000014998	vars2	94	46.241	ENSNGAG00000020607	Vars2	90	46.793	Nannospalax_galili
ENSPREG00000014998	vars2	61	61.644	ENSNBRG00000001624	vars2	55	61.644	Neolamprologus_brichardi
ENSPREG00000014998	vars2	95	46.177	ENSNLEG00000005625	VARS2	88	47.276	Nomascus_leucogenys
ENSPREG00000014998	vars2	74	48.333	ENSMEUG00000014475	VARS2	83	48.333	Notamacropus_eugenii
ENSPREG00000014998	vars2	81	53.548	ENSOPRG00000000682	VARS2	72	65.833	Ochotona_princeps
ENSPREG00000014998	vars2	93	46.815	ENSODEG00000017965	VARS2	88	47.867	Octodon_degus
ENSPREG00000014998	vars2	93	49.104	ENSONIG00000004734	vars2	97	49.203	Oreochromis_niloticus
ENSPREG00000014998	vars2	72	40.642	ENSOANG00000000398	-	87	40.642	Ornithorhynchus_anatinus
ENSPREG00000014998	vars2	96	43.093	ENSOCUG00000021496	VARS2	57	44.590	Oryctolagus_cuniculus
ENSPREG00000014998	vars2	93	66.870	ENSORLG00000010632	vars2	90	66.870	Oryzias_latipes
ENSPREG00000014998	vars2	93	66.565	ENSORLG00020018584	vars2	90	66.565	Oryzias_latipes_hni
ENSPREG00000014998	vars2	93	66.837	ENSORLG00015010408	vars2	90	66.633	Oryzias_latipes_hsok
ENSPREG00000014998	vars2	94	65.139	ENSOMEG00000008360	vars2	97	63.302	Oryzias_melastigma
ENSPREG00000014998	vars2	92	47.678	ENSOGAG00000006087	VARS2	86	47.678	Otolemur_garnettii
ENSPREG00000014998	vars2	94	46.560	ENSOARG00000010844	VARS2	88	47.095	Ovis_aries
ENSPREG00000014998	vars2	95	46.832	ENSPPAG00000041141	VARS2	89	48.053	Pan_paniscus
ENSPREG00000014998	vars2	95	46.943	ENSPPRG00000006751	VARS2	86	47.897	Panthera_pardus
ENSPREG00000014998	vars2	95	46.844	ENSPTIG00000017799	VARS2	93	47.497	Panthera_tigris_altaica
ENSPREG00000014998	vars2	95	46.832	ENSPTRG00000034497	VARS2	89	48.053	Pan_troglodytes
ENSPREG00000014998	vars2	94	46.667	ENSPANG00000018481	VARS2	91	48.095	Papio_anubis
ENSPREG00000014998	vars2	95	60.398	ENSPKIG00000011372	vars2	97	58.523	Paramormyrops_kingsleyae
ENSPREG00000014998	vars2	59	52.426	ENSPSIG00000006206	VARS2	95	51.335	Pelodiscus_sinensis
ENSPREG00000014998	vars2	96	63.333	ENSPMGG00000000465	vars2	93	63.574	Periophthalmus_magnuspinnatus
ENSPREG00000014998	vars2	96	46.823	ENSPEMG00000014691	Vars2	89	48.247	Peromyscus_maniculatus_bairdii
ENSPREG00000014998	vars2	96	45.849	ENSPCIG00000015040	VARS2	88	47.767	Phascolarctos_cinereus
ENSPREG00000014998	vars2	97	86.855	ENSPFOG00000017616	vars2	94	86.855	Poecilia_formosa
ENSPREG00000014998	vars2	99	87.250	ENSPLAG00000019778	vars2	97	87.250	Poecilia_latipinna
ENSPREG00000014998	vars2	99	87.441	ENSPMEG00000011123	vars2	97	87.441	Poecilia_mexicana
ENSPREG00000014998	vars2	95	46.535	ENSPPYG00000016424	VARS2	89	47.848	Pongo_abelii
ENSPREG00000014998	vars2	61	52.724	ENSPCAG00000006946	VARS2	59	52.724	Procavia_capensis
ENSPREG00000014998	vars2	94	46.307	ENSPCOG00000014839	VARS2	87	46.837	Propithecus_coquereli
ENSPREG00000014998	vars2	94	46.230	ENSPVAG00000004197	VARS2	88	47.228	Pteropus_vampyrus
ENSPREG00000014998	vars2	86	67.039	ENSPNYG00000010314	vars2	97	67.039	Pundamilia_nyererei
ENSPREG00000014998	vars2	96	61.303	ENSPNAG00000026793	vars2	93	61.303	Pygocentrus_nattereri
ENSPREG00000014998	vars2	95	46.443	ENSRNOG00000000833	Vars2	90	47.604	Rattus_norvegicus
ENSPREG00000014998	vars2	94	46.567	ENSRBIG00000032725	VARS2	88	48.083	Rhinopithecus_bieti
ENSPREG00000014998	vars2	94	46.368	ENSRROG00000043847	VARS2	89	47.786	Rhinopithecus_roxellana
ENSPREG00000014998	vars2	94	44.868	ENSSBOG00000033240	VARS2	87	46.208	Saimiri_boliviensis_boliviensis
ENSPREG00000014998	vars2	93	47.422	ENSSHAG00000009307	VARS2	87	48.674	Sarcophilus_harrisii
ENSPREG00000014998	vars2	96	59.824	ENSSFOG00015016187	vars2	94	59.202	Scleropages_formosus
ENSPREG00000014998	vars2	93	68.325	ENSSMAG00000020842	vars2	97	66.667	Scophthalmus_maximus
ENSPREG00000014998	vars2	94	70.452	ENSSDUG00000011598	vars2	97	68.780	Seriola_dumerili
ENSPREG00000014998	vars2	91	69.813	ENSSLDG00000015492	vars2	97	66.635	Seriola_lalandi_dorsalis
ENSPREG00000014998	vars2	80	52.921	ENSSPUG00000014700	VARS2	87	52.921	Sphenodon_punctatus
ENSPREG00000014998	vars2	99	66.920	ENSSPAG00000004654	vars2	97	66.920	Stegastes_partitus
ENSPREG00000014998	vars2	94	47.505	ENSSSCG00000001384	VARS2	93	48.739	Sus_scrofa
ENSPREG00000014998	vars2	94	64.623	ENSTRUG00000005264	vars2	93	64.623	Takifugu_rubripes
ENSPREG00000014998	vars2	93	62.107	ENSTNIG00000005916	vars2	94	60.697	Tetraodon_nigroviridis
ENSPREG00000014998	vars2	83	53.020	ENSTTRG00000012243	VARS2	78	58.268	Tursiops_truncatus
ENSPREG00000014998	vars2	95	46.404	ENSUAMG00000026124	VARS2	95	47.677	Ursus_americanus
ENSPREG00000014998	vars2	95	46.535	ENSUMAG00000019894	VARS2	89	47.634	Ursus_maritimus
ENSPREG00000014998	vars2	94	46.283	ENSVVUG00000010754	VARS2	84	47.781	Vulpes_vulpes
ENSPREG00000014998	vars2	91	45.108	ENSXETG00000003036	vars2	98	45.108	Xenopus_tropicalis
ENSPREG00000014998	vars2	99	81.905	ENSXCOG00000003455	vars2	99	81.905	Xiphophorus_couchianus
ENSPREG00000014998	vars2	99	82.890	ENSXMAG00000013523	vars2	97	82.890	Xiphophorus_maculatus