EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPREG00000015035 (Gene tree)
Gene ID: 103479293
Gene Symbol: trnau1apb
Alias: secp43|trnau1ap|trnau1apl|trspap1|wu:fa56b07|wu:fc12c07|wu:fc69f09|zgc:113964|zgc:77884
Full Name: tRNA selenocysteine 1-associated protein 1-like
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Plus strand
Length: 9481 bases
Position: chrLG17:12154550-12164030
Accession: 103479293
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000022259	RRM_1	PF00076.22	2.5e-31	1	2
ENSPREP00000022259	RRM_1	PF00076.22	2.5e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000022491	-	4863	XM_008433650	ENSPREP00000022259	344 (aa)	XP_008431872	UPI0004A23BFA

Gene Model

Click here to download ENSPREG00000015035's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000015035's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPREG00000015035	trnau1apb	51	31.868	ENSPREG00000017346	tia1	66	31.868
ENSPREG00000015035	trnau1apb	51	30.952	ENSPREG00000019595	pabpc1a	82	30.952
ENSPREG00000015035	trnau1apb	54	30.000	ENSPREG00000019232	tia1l	68	30.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000015035	trnau1apb	99	73.178	ENSAPOG00000010086	trnau1apb	100	75.291	Acanthochromis_polyacanthus
ENSPREG00000015035	trnau1apb	99	77.101	ENSACIG00000001863	trnau1apb	100	75.723	Amphilophus_citrinellus
ENSPREG00000015035	trnau1apb	99	82.659	ENSAOCG00000011891	trnau1apb	100	81.034	Amphiprion_ocellaris
ENSPREG00000015035	trnau1apb	99	72.174	ENSAPEG00000008029	trnau1apb	100	81.503	Amphiprion_percula
ENSPREG00000015035	trnau1apb	99	82.081	ENSATEG00000002196	trnau1apb	100	80.172	Anabas_testudineus
ENSPREG00000015035	trnau1apb	99	76.504	ENSACLG00000003016	trnau1apb	100	75.358	Astatotilapia_calliptera
ENSPREG00000015035	trnau1apb	99	61.808	ENSAMXG00000001805	trnau1apb	99	62.573	Astyanax_mexicanus
ENSPREG00000015035	trnau1apb	98	80.531	ENSCSEG00000018215	trnau1apb	98	80.531	Cynoglossus_semilaevis
ENSPREG00000015035	trnau1apb	95	87.768	ENSCVAG00000017866	trnau1apb	100	87.768	Cyprinodon_variegatus
ENSPREG00000015035	trnau1apb	99	60.526	ENSDARG00000056475	trnau1apb	98	61.877	Danio_rerio
ENSPREG00000015035	trnau1apb	99	61.272	ENSELUG00000016683	trnau1apb	99	63.112	Esox_lucius
ENSPREG00000015035	trnau1apb	100	90.698	ENSFHEG00000001267	trnau1apb	100	90.698	Fundulus_heteroclitus
ENSPREG00000015035	trnau1apb	69	83.264	ENSGMOG00000001160	trnau1apb	100	69.275	Gadus_morhua
ENSPREG00000015035	trnau1apb	99	68.497	ENSGAFG00000006770	trnau1apb	100	79.539	Gambusia_affinis
ENSPREG00000015035	trnau1apb	99	73.699	ENSGACG00000014944	trnau1apb	100	74.277	Gasterosteus_aculeatus
ENSPREG00000015035	trnau1apb	71	38.462	ENSGAGG00000022384	-	78	37.247	Gopherus_agassizii
ENSPREG00000015035	trnau1apb	100	83.285	ENSHBUG00000018944	trnau1apb	100	81.662	Haplochromis_burtoni
ENSPREG00000015035	trnau1apb	66	79.039	ENSHCOG00000011350	trnau1apb	78	77.328	Hippocampus_comes
ENSPREG00000015035	trnau1apb	99	59.593	ENSIPUG00000008843	tsp1l	99	62.757	Ictalurus_punctatus
ENSPREG00000015035	trnau1apb	63	90.000	ENSKMAG00000010082	trnau1apb	100	85.260	Kryptolebias_marmoratus
ENSPREG00000015035	trnau1apb	99	77.971	ENSLBEG00000020480	trnau1apb	100	77.391	Labrus_bergylta
ENSPREG00000015035	trnau1apb	99	50.997	ENSLOCG00000013175	trnau1apb	99	50.847	Lepisosteus_oculatus
ENSPREG00000015035	trnau1apb	99	81.503	ENSMAMG00000012192	trnau1apb	100	82.370	Mastacembelus_armatus
ENSPREG00000015035	trnau1apb	100	83.285	ENSMZEG00005014852	trnau1apb	100	81.662	Maylandia_zebra
ENSPREG00000015035	trnau1apb	71	37.247	ENSMGAG00000003234	-	99	36.842	Meleagris_gallopavo
ENSPREG00000015035	trnau1apb	97	72.206	ENSMMOG00000021521	trnau1apb	100	72.206	Mola_mola
ENSPREG00000015035	trnau1apb	99	70.968	ENSMALG00000003772	trnau1apb	100	71.137	Monopterus_albus
ENSPREG00000015035	trnau1apb	97	76.696	ENSNBRG00000000751	trnau1apb	99	75.516	Neolamprologus_brichardi
ENSPREG00000015035	trnau1apb	99	72.222	ENSONIG00000016639	trnau1apb	100	70.845	Oreochromis_niloticus
ENSPREG00000015035	trnau1apb	100	75.723	ENSORLG00000013265	trnau1apb	100	75.723	Oryzias_latipes
ENSPREG00000015035	trnau1apb	100	75.575	ENSORLG00020004464	trnau1apb	100	80.460	Oryzias_latipes_hni
ENSPREG00000015035	trnau1apb	100	75.575	ENSORLG00015021098	trnau1apb	100	80.460	Oryzias_latipes_hsok
ENSPREG00000015035	trnau1apb	100	71.387	ENSOMEG00000016531	trnau1apb	100	82.997	Oryzias_melastigma
ENSPREG00000015035	trnau1apb	99	54.023	ENSPKIG00000007995	trnau1apb	99	56.818	Paramormyrops_kingsleyae
ENSPREG00000015035	trnau1apb	71	40.081	ENSPSIG00000004189	-	78	39.676	Pelodiscus_sinensis
ENSPREG00000015035	trnau1apb	78	74.895	ENSPMGG00000018509	trnau1apb	97	76.987	Periophthalmus_magnuspinnatus
ENSPREG00000015035	trnau1apb	100	97.093	ENSPFOG00000003938	trnau1apb	100	97.093	Poecilia_formosa
ENSPREG00000015035	trnau1apb	100	97.093	ENSPLAG00000015480	trnau1apb	100	97.093	Poecilia_latipinna
ENSPREG00000015035	trnau1apb	100	97.093	ENSPMEG00000012743	trnau1apb	100	97.093	Poecilia_mexicana
ENSPREG00000015035	trnau1apb	99	74.212	ENSPNYG00000012127	trnau1apb	100	73.066	Pundamilia_nyererei
ENSPREG00000015035	trnau1apb	99	61.628	ENSPNAG00000019138	trnau1apb	98	62.757	Pygocentrus_nattereri
ENSPREG00000015035	trnau1apb	99	58.239	ENSSFOG00015014158	trnau1apb	99	60.286	Scleropages_formosus
ENSPREG00000015035	trnau1apb	99	78.488	ENSSMAG00000001745	trnau1apb	99	78.779	Scophthalmus_maximus
ENSPREG00000015035	trnau1apb	99	82.609	ENSSDUG00000011109	trnau1apb	99	80.980	Seriola_dumerili
ENSPREG00000015035	trnau1apb	99	82.319	ENSSLDG00000012947	trnau1apb	99	80.403	Seriola_lalandi_dorsalis
ENSPREG00000015035	trnau1apb	71	34.686	ENSSPUG00000016701	-	91	34.843	Sphenodon_punctatus
ENSPREG00000015035	trnau1apb	99	83.526	ENSSPAG00000006917	trnau1apb	100	82.471	Stegastes_partitus
ENSPREG00000015035	trnau1apb	100	75.145	ENSTRUG00000008608	trnau1apb	100	74.640	Takifugu_rubripes
ENSPREG00000015035	trnau1apb	99	65.103	ENSTNIG00000000916	trnau1apb	100	62.170	Tetraodon_nigroviridis
ENSPREG00000015035	trnau1apb	94	83.642	ENSXCOG00000007974	trnau1apb	94	83.642	Xiphophorus_couchianus
ENSPREG00000015035	trnau1apb	100	97.093	ENSXMAG00000029918	trnau1apb	100	97.093	Xiphophorus_maculatus