EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPREG00000015795 (Gene tree)
Gene ID: 103469127
Gene Symbol: alyref
Alias: tho4|thoc4|zgc:171753
Full Name: THO complex subunit 4-like
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Minus strand
Length: 6109 bases
Position: chrLG8:21058064-21064172
Accession: 103469127
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000023413	RRM_1	PF00076.22	1.3e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000023653	-	3462	XM_008416642	ENSPREP00000023413	270 (aa)	XP_008414864	UPI0004A260BE

Gene Model

Click here to download ENSPREG00000015795's gene model file

Pathways

Pathway ID	Pathway Name	Source
pret03013	RNA transport	KEGG
pret03015	mRNA surveillance pathway	KEGG
pret03040	Spliceosome	KEGG
pret05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000015795's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPREG00000015795	alyref	100	50.000	ENSPREG00000003649	-	100	47.794

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000015795	alyref	100	53.261	ENSAPOG00000000183	-	100	48.639	Acanthochromis_polyacanthus
ENSPREG00000015795	alyref	100	48.161	ENSACIG00000020351	-	100	52.414	Amphilophus_citrinellus
ENSPREG00000015795	alyref	99	77.289	ENSACIG00000006351	alyref	98	76.727	Amphilophus_citrinellus
ENSPREG00000015795	alyref	100	53.650	ENSAOCG00000019305	-	100	52.555	Amphiprion_ocellaris
ENSPREG00000015795	alyref	100	79.710	ENSAOCG00000014012	alyref	100	80.797	Amphiprion_ocellaris
ENSPREG00000015795	alyref	100	54.745	ENSAPEG00000013527	-	100	52.555	Amphiprion_percula
ENSPREG00000015795	alyref	100	79.710	ENSAPEG00000014603	alyref	100	80.797	Amphiprion_percula
ENSPREG00000015795	alyref	100	76.786	ENSATEG00000004307	alyref	100	77.143	Anabas_testudineus
ENSPREG00000015795	alyref	100	57.818	ENSATEG00000000382	-	100	57.455	Anabas_testudineus
ENSPREG00000015795	alyref	100	54.064	ENSACLG00000010184	-	100	55.088	Astatotilapia_calliptera
ENSPREG00000015795	alyref	100	81.588	ENSACLG00000008432	alyref	100	82.310	Astatotilapia_calliptera
ENSPREG00000015795	alyref	100	73.571	ENSAMXG00000007359	alyref	100	76.071	Astyanax_mexicanus
ENSPREG00000015795	alyref	99	44.245	ENSCING00000013568	-	99	44.128	Ciona_intestinalis
ENSPREG00000015795	alyref	99	45.956	ENSCSAVG00000003324	-	99	43.173	Ciona_savignyi
ENSPREG00000015795	alyref	100	77.978	ENSCSEG00000017800	alyref	100	79.422	Cynoglossus_semilaevis
ENSPREG00000015795	alyref	100	81.685	ENSCVAG00000014869	alyref	100	84.615	Cyprinodon_variegatus
ENSPREG00000015795	alyref	100	50.183	ENSCVAG00000007789	-	100	45.652	Cyprinodon_variegatus
ENSPREG00000015795	alyref	100	78.214	ENSDARG00000077732	alyref	100	77.143	Danio_rerio
ENSPREG00000015795	alyref	97	44.326	FBgn0010774	Ref1	65	49.444	Drosophila_melanogaster
ENSPREG00000015795	alyref	99	52.060	ENSEBUG00000008253	alyref	95	52.206	Eptatretus_burgeri
ENSPREG00000015795	alyref	70	46.907	ENSEBUG00000006305	alyref	100	39.643	Eptatretus_burgeri
ENSPREG00000015795	alyref	100	66.078	ENSELUG00000008849	-	100	65.724	Esox_lucius
ENSPREG00000015795	alyref	100	73.626	ENSELUG00000017178	alyref	100	69.963	Esox_lucius
ENSPREG00000015795	alyref	57	76.582	ENSFALG00000011923	-	96	72.727	Ficedula_albicollis
ENSPREG00000015795	alyref	100	82.963	ENSFHEG00000019426	alyref	100	82.353	Fundulus_heteroclitus
ENSPREG00000015795	alyref	100	49.818	ENSFHEG00000004698	-	100	47.445	Fundulus_heteroclitus
ENSPREG00000015795	alyref	67	56.716	ENSGMOG00000013122	-	100	58.763	Gadus_morhua
ENSPREG00000015795	alyref	100	69.708	ENSGMOG00000009882	alyref	100	67.153	Gadus_morhua
ENSPREG00000015795	alyref	100	46.643	ENSGAFG00000007573	-	100	46.909	Gambusia_affinis
ENSPREG00000015795	alyref	100	98.889	ENSGAFG00000006014	alyref	100	98.889	Gambusia_affinis
ENSPREG00000015795	alyref	100	81.588	ENSHBUG00000020196	alyref	100	82.310	Haplochromis_burtoni
ENSPREG00000015795	alyref	100	56.294	ENSHBUG00000001454	-	100	55.052	Haplochromis_burtoni
ENSPREG00000015795	alyref	98	50.183	ENSHCOG00000012825	-	94	48.352	Hippocampus_comes
ENSPREG00000015795	alyref	100	74.275	ENSIPUG00000009469	alyref	100	70.290	Ictalurus_punctatus
ENSPREG00000015795	alyref	73	65.990	ENSSTOG00000016570	-	92	63.102	Ictidomys_tridecemlineatus
ENSPREG00000015795	alyref	100	77.899	ENSKMAG00000008912	alyref	100	80.072	Kryptolebias_marmoratus
ENSPREG00000015795	alyref	100	52.920	ENSKMAG00000006462	-	100	51.095	Kryptolebias_marmoratus
ENSPREG00000015795	alyref	99	48.746	ENSLBEG00000012930	-	99	46.237	Labrus_bergylta
ENSPREG00000015795	alyref	100	48.814	ENSLBEG00000005387	-	100	47.959	Labrus_bergylta
ENSPREG00000015795	alyref	100	80.727	ENSLBEG00000023118	alyref	90	84.000	Labrus_bergylta
ENSPREG00000015795	alyref	76	68.519	ENSLOCG00000013879	alyref	89	68.372	Lepisosteus_oculatus
ENSPREG00000015795	alyref	100	50.174	ENSMAMG00000005464	-	100	50.530	Mastacembelus_armatus
ENSPREG00000015795	alyref	100	80.144	ENSMAMG00000003034	alyref	100	80.505	Mastacembelus_armatus
ENSPREG00000015795	alyref	100	81.588	ENSMZEG00005008639	alyref	100	82.310	Maylandia_zebra
ENSPREG00000015795	alyref	100	53.710	ENSMZEG00005012096	-	100	54.737	Maylandia_zebra
ENSPREG00000015795	alyref	99	49.817	ENSMMOG00000007032	-	98	44.876	Mola_mola
ENSPREG00000015795	alyref	99	80.370	ENSMMOG00000012458	alyref	97	77.656	Mola_mola
ENSPREG00000015795	alyref	100	50.508	ENSMALG00000006054	-	100	48.621	Monopterus_albus
ENSPREG00000015795	alyref	100	53.819	ENSMLUG00000014372	-	100	54.480	Myotis_lucifugus
ENSPREG00000015795	alyref	98	56.364	ENSMLUG00000030671	-	99	53.650	Myotis_lucifugus
ENSPREG00000015795	alyref	98	55.762	ENSMLUG00000022178	-	98	54.647	Myotis_lucifugus
ENSPREG00000015795	alyref	100	54.965	ENSMLUG00000006521	-	100	53.047	Myotis_lucifugus
ENSPREG00000015795	alyref	98	55.357	ENSMLUG00000022467	-	98	50.179	Myotis_lucifugus
ENSPREG00000015795	alyref	100	55.197	ENSMLUG00000004098	-	100	53.405	Myotis_lucifugus
ENSPREG00000015795	alyref	98	52.878	ENSMLUG00000009247	-	77	57.820	Myotis_lucifugus
ENSPREG00000015795	alyref	98	54.152	ENSMLUG00000028605	-	98	53.430	Myotis_lucifugus
ENSPREG00000015795	alyref	100	67.528	ENSNGAG00000022014	-	100	62.362	Nannospalax_galili
ENSPREG00000015795	alyref	100	81.949	ENSNBRG00000001747	alyref	100	81.949	Neolamprologus_brichardi
ENSPREG00000015795	alyref	100	54.804	ENSNBRG00000017460	-	100	55.830	Neolamprologus_brichardi
ENSPREG00000015795	alyref	100	56.989	ENSONIG00000003296	-	100	57.857	Oreochromis_niloticus
ENSPREG00000015795	alyref	100	78.929	ENSONIG00000019434	alyref	100	80.357	Oreochromis_niloticus
ENSPREG00000015795	alyref	99	40.881	ENSORLG00000001620	-	60	46.460	Oryzias_latipes
ENSPREG00000015795	alyref	100	48.551	ENSORLG00020015673	-	99	47.292	Oryzias_latipes_hni
ENSPREG00000015795	alyref	100	81.618	ENSORLG00020011942	alyref	100	84.559	Oryzias_latipes_hni
ENSPREG00000015795	alyref	100	84.191	ENSORLG00015022664	alyref	100	84.191	Oryzias_latipes_hsok
ENSPREG00000015795	alyref	100	47.500	ENSORLG00015015143	-	99	45.205	Oryzias_latipes_hsok
ENSPREG00000015795	alyref	100	83.764	ENSOMEG00000019176	alyref	100	86.716	Oryzias_melastigma
ENSPREG00000015795	alyref	99	51.301	ENSOMEG00000007158	-	97	48.148	Oryzias_melastigma
ENSPREG00000015795	alyref	68	72.973	ENSPPAG00000036403	-	68	71.351	Pan_paniscus
ENSPREG00000015795	alyref	100	73.358	ENSPKIG00000007070	alyref	100	70.438	Paramormyrops_kingsleyae
ENSPREG00000015795	alyref	99	72.894	ENSPKIG00000006233	-	81	67.883	Paramormyrops_kingsleyae
ENSPREG00000015795	alyref	99	76.753	ENSPMGG00000016600	alyref	91	78.467	Periophthalmus_magnuspinnatus
ENSPREG00000015795	alyref	74	47.739	ENSPMGG00000012994	-	70	57.258	Periophthalmus_magnuspinnatus
ENSPREG00000015795	alyref	100	62.455	ENSPEMG00000016628	-	79	71.123	Peromyscus_maniculatus_bairdii
ENSPREG00000015795	alyref	100	47.872	ENSPFOG00000017094	-	100	46.715	Poecilia_formosa
ENSPREG00000015795	alyref	100	98.524	ENSPFOG00000022825	alyref	99	98.524	Poecilia_formosa
ENSPREG00000015795	alyref	100	98.889	ENSPLAG00000006948	alyref	100	98.889	Poecilia_latipinna
ENSPREG00000015795	alyref	100	47.872	ENSPLAG00000014380	-	100	46.715	Poecilia_latipinna
ENSPREG00000015795	alyref	100	47.872	ENSPMEG00000023039	-	100	46.715	Poecilia_mexicana
ENSPREG00000015795	alyref	100	98.524	ENSPMEG00000003547	alyref	100	98.524	Poecilia_mexicana
ENSPREG00000015795	alyref	100	81.588	ENSPNYG00000017498	alyref	100	82.310	Pundamilia_nyererei
ENSPREG00000015795	alyref	99	49.825	ENSPNYG00000002879	-	98	52.688	Pundamilia_nyererei
ENSPREG00000015795	alyref	100	75.451	ENSPNAG00000002531	alyref	100	71.841	Pygocentrus_nattereri
ENSPREG00000015795	alyref	83	65.333	ENSSBOG00000030924	-	87	70.103	Saimiri_boliviensis_boliviensis
ENSPREG00000015795	alyref	99	53.650	ENSSHAG00000012866	-	78	58.252	Sarcophilus_harrisii
ENSPREG00000015795	alyref	99	55.273	ENSSHAG00000000609	-	99	53.333	Sarcophilus_harrisii
ENSPREG00000015795	alyref	89	65.975	ENSSFOG00015003923	alyref	73	74.163	Scleropages_formosus
ENSPREG00000015795	alyref	68	73.936	ENSSFOG00015003678	alyref	83	72.432	Scleropages_formosus
ENSPREG00000015795	alyref	100	81.818	ENSSMAG00000009283	alyref	100	79.636	Scophthalmus_maximus
ENSPREG00000015795	alyref	100	52.817	ENSSMAG00000011169	-	100	55.172	Scophthalmus_maximus
ENSPREG00000015795	alyref	100	79.710	ENSSDUG00000016158	alyref	100	80.435	Seriola_dumerili
ENSPREG00000015795	alyref	100	78.700	ENSSLDG00000017803	alyref	100	79.422	Seriola_lalandi_dorsalis
ENSPREG00000015795	alyref	99	54.745	ENSSPAG00000017028	-	96	54.380	Stegastes_partitus
ENSPREG00000015795	alyref	100	51.220	ENSTRUG00000003051	-	100	49.301	Takifugu_rubripes
ENSPREG00000015795	alyref	100	50.549	ENSTNIG00000014136	-	100	46.520	Tetraodon_nigroviridis
ENSPREG00000015795	alyref	100	73.381	ENSTNIG00000011595	alyref	100	71.942	Tetraodon_nigroviridis
ENSPREG00000015795	alyref	69	73.545	ENSVVUG00000000272	-	82	72.340	Vulpes_vulpes
ENSPREG00000015795	alyref	100	96.667	ENSXCOG00000018047	alyref	99	96.667	Xiphophorus_couchianus
ENSPREG00000015795	alyref	100	50.909	ENSXMAG00000018086	-	100	47.080	Xiphophorus_maculatus
ENSPREG00000015795	alyref	100	97.037	ENSXMAG00000012218	alyref	99	97.037	Xiphophorus_maculatus