EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPREG00000015886 (Gene tree)
Gene ID: 103467939
Gene Symbol: pabpc1l
Alias: fi20g03|wu:fi20g03|zgc:55855
Full Name: embryonic polyadenylate-binding protein-like
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Plus strand
Length: 6205 bases
Position: chrLG7:22149941-22156145
Accession: 103467939
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000023528	RRM_5	PF13893.6	1.7e-10	1	2
ENSPREP00000023528	RRM_5	PF13893.6	1.7e-10	2	2
ENSPREP00000023528	RRM_1	PF00076.22	1.7e-90	1	4
ENSPREP00000023528	RRM_1	PF00076.22	1.7e-90	2	4
ENSPREP00000023528	RRM_1	PF00076.22	1.7e-90	3	4
ENSPREP00000023528	RRM_1	PF00076.22	1.7e-90	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000023768	-	1239	XM_008414701	ENSPREP00000023528	412 (aa)	XP_008412923	-

Gene Model

Click here to download ENSPREG00000015886's gene model file

Pathways

Pathway ID	Pathway Name	Source
pret03013	RNA transport	KEGG
pret03015	mRNA surveillance pathway	KEGG
pret03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000015886's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPREG00000015886	pabpc1l	91	32.673	ENSPREG00000011880	rbms3	51	32.673
ENSPREG00000015886	pabpc1l	73	34.884	ENSPREG00000021231	celf4	72	31.405
ENSPREG00000015886	pabpc1l	73	34.884	ENSPREG00000018002	-	57	34.884
ENSPREG00000015886	pabpc1l	89	31.395	ENSPREG00000002689	tial1	83	32.283
ENSPREG00000015886	pabpc1l	74	36.047	ENSPREG00000008235	celf5a	58	33.962
ENSPREG00000015886	pabpc1l	87	33.333	ENSPREG00000005877	-	97	32.584
ENSPREG00000015886	pabpc1l	94	87.786	ENSPREG00000019595	pabpc1a	92	87.786
ENSPREG00000015886	pabpc1l	71	34.247	ENSPREG00000018923	celf3a	67	34.247
ENSPREG00000015886	pabpc1l	100	77.590	ENSPREG00000001589	pabpc4	66	77.590
ENSPREG00000015886	pabpc1l	91	35.789	ENSPREG00000018221	-	60	35.417
ENSPREG00000015886	pabpc1l	100	81.010	ENSPREG00000010911	pabpc1b	69	81.010
ENSPREG00000015886	pabpc1l	90	30.151	ENSPREG00000018937	elavl4	84	30.151
ENSPREG00000015886	pabpc1l	93	30.653	ENSPREG00000006971	elavl3	90	30.653
ENSPREG00000015886	pabpc1l	87	37.333	ENSPREG00000000978	rbm19	75	37.333
ENSPREG00000015886	pabpc1l	65	36.000	ENSPREG00000010801	myef2	57	36.000
ENSPREG00000015886	pabpc1l	75	36.047	ENSPREG00000005911	si:dkey-205h23.2	60	34.247

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000015886	pabpc1l	99	76.513	ENSG00000101104	PABPC1L	98	75.926	Homo_sapiens
ENSPREG00000015886	pabpc1l	99	89.781	ENSAPOG00000010842	pabpc1l	67	89.781	Acanthochromis_polyacanthus
ENSPREG00000015886	pabpc1l	100	77.536	ENSAMEG00000004099	PABPC1L	65	77.536	Ailuropoda_melanoleuca
ENSPREG00000015886	pabpc1l	100	95.146	ENSACIG00000021004	-	76	95.013	Amphilophus_citrinellus
ENSPREG00000015886	pabpc1l	99	89.294	ENSAOCG00000006167	-	66	89.294	Amphiprion_ocellaris
ENSPREG00000015886	pabpc1l	100	89.216	ENSAPEG00000010558	-	99	89.908	Amphiprion_percula
ENSPREG00000015886	pabpc1l	99	95.134	ENSATEG00000007428	pabpc1l	67	95.134	Anabas_testudineus
ENSPREG00000015886	pabpc1l	98	81.683	ENSAPLG00000008415	PABPC1L	66	81.068	Anas_platyrhynchos
ENSPREG00000015886	pabpc1l	99	82.809	ENSACAG00000011841	PABPC1L	65	82.809	Anolis_carolinensis
ENSPREG00000015886	pabpc1l	99	75.787	ENSANAG00000026826	PABPC1L	67	75.787	Aotus_nancymaae
ENSPREG00000015886	pabpc1l	99	95.134	ENSACLG00000024791	pabpc1l	66	95.134	Astatotilapia_calliptera
ENSPREG00000015886	pabpc1l	100	86.957	ENSAMXG00000013552	pabpc1l	66	86.957	Astyanax_mexicanus
ENSPREG00000015886	pabpc1l	94	87.500	ENSBTAG00000055300	-	100	87.500	Bos_taurus
ENSPREG00000015886	pabpc1l	91	68.699	ENSBTAG00000016849	PABPC1L	75	68.699	Bos_taurus
ENSPREG00000015886	pabpc1l	99	75.787	ENSCJAG00000017628	PABPC1L	67	75.787	Callithrix_jacchus
ENSPREG00000015886	pabpc1l	89	80.460	ENSCJAG00000038506	-	100	80.460	Callithrix_jacchus
ENSPREG00000015886	pabpc1l	99	77.240	ENSCAFG00000009573	PABPC1L	64	77.240	Canis_familiaris
ENSPREG00000015886	pabpc1l	99	76.998	ENSCAFG00020013828	PABPC1L	68	76.998	Canis_lupus_dingo
ENSPREG00000015886	pabpc1l	99	78.450	ENSCHIG00000025759	PABPC1L	64	78.450	Capra_hircus
ENSPREG00000015886	pabpc1l	99	76.513	ENSTSYG00000006645	PABPC1L	67	76.513	Carlito_syrichta
ENSPREG00000015886	pabpc1l	97	72.024	ENSCAPG00000014519	PABPC1L	62	72.024	Cavia_aperea
ENSPREG00000015886	pabpc1l	99	74.384	ENSCPOG00000013633	PABPC1L	66	74.384	Cavia_porcellus
ENSPREG00000015886	pabpc1l	99	75.862	ENSCCAG00000023338	PABPC1L	67	75.303	Cebus_capucinus
ENSPREG00000015886	pabpc1l	99	76.998	ENSCATG00000034065	PABPC1L	67	76.998	Cercocebus_atys
ENSPREG00000015886	pabpc1l	99	73.645	ENSCLAG00000005298	PABPC1L	67	73.123	Chinchilla_lanigera
ENSPREG00000015886	pabpc1l	99	76.755	ENSCSAG00000014242	PABPC1L	67	76.755	Chlorocebus_sabaeus
ENSPREG00000015886	pabpc1l	83	84.733	ENSCPBG00000007810	-	91	84.733	Chrysemys_picta_bellii
ENSPREG00000015886	pabpc1l	99	81.598	ENSCPBG00000017755	-	93	81.598	Chrysemys_picta_bellii
ENSPREG00000015886	pabpc1l	75	57.576	ENSCING00000002796	-	53	57.576	Ciona_intestinalis
ENSPREG00000015886	pabpc1l	99	68.780	ENSCSAVG00000004246	-	74	65.509	Ciona_savignyi
ENSPREG00000015886	pabpc1l	83	85.034	ENSCSAVG00000003102	-	100	85.034	Ciona_savignyi
ENSPREG00000015886	pabpc1l	99	76.998	ENSCANG00000037530	PABPC1L	67	76.998	Colobus_angolensis_palliatus
ENSPREG00000015886	pabpc1l	99	72.236	ENSCGRG00001021938	Pabpc1l	66	72.236	Cricetulus_griseus_chok1gshd
ENSPREG00000015886	pabpc1l	99	72.236	ENSCGRG00000007946	Pabpc1l	66	72.236	Cricetulus_griseus_crigri
ENSPREG00000015886	pabpc1l	99	90.663	ENSCSEG00000021295	pabpc1l	73	90.663	Cynoglossus_semilaevis
ENSPREG00000015886	pabpc1l	99	96.107	ENSCVAG00000015943	-	99	97.710	Cyprinodon_variegatus
ENSPREG00000015886	pabpc1l	100	85.301	ENSDARG00000002597	pabpc1l	88	96.154	Danio_rerio
ENSPREG00000015886	pabpc1l	99	77.240	ENSDNOG00000048450	PABPC1L	67	77.240	Dasypus_novemcinctus
ENSPREG00000015886	pabpc1l	99	74.757	ENSDORG00000001067	Pabpc1l	67	74.757	Dipodomys_ordii
ENSPREG00000015886	pabpc1l	94	85.119	ENSEASG00005023408	-	100	85.119	Equus_asinus_asinus
ENSPREG00000015886	pabpc1l	76	75.316	ENSEASG00005023407	-	64	75.316	Equus_asinus_asinus
ENSPREG00000015886	pabpc1l	91	72.917	ENSECAG00000040139	-	70	72.917	Equus_caballus
ENSPREG00000015886	pabpc1l	99	75.912	ENSEEUG00000005978	PABPC1L	67	75.912	Erinaceus_europaeus
ENSPREG00000015886	pabpc1l	99	87.651	ENSELUG00000001811	pabpc1l	74	87.651	Esox_lucius
ENSPREG00000015886	pabpc1l	99	77.240	ENSFCAG00000011692	PABPC1L	68	77.240	Felis_catus
ENSPREG00000015886	pabpc1l	99	81.840	ENSFALG00000005372	PABPC1L	70	81.840	Ficedula_albicollis
ENSPREG00000015886	pabpc1l	99	74.877	ENSFDAG00000008291	PABPC1L	68	74.877	Fukomys_damarensis
ENSPREG00000015886	pabpc1l	99	96.350	ENSFHEG00000003398	pabpc1l	67	96.350	Fundulus_heteroclitus
ENSPREG00000015886	pabpc1l	99	89.806	ENSGMOG00000004437	pabpc1l	66	89.806	Gadus_morhua
ENSPREG00000015886	pabpc1l	99	81.840	ENSGALG00000004123	PABPC1L	98	81.840	Gallus_gallus
ENSPREG00000015886	pabpc1l	99	90.745	ENSGAFG00000021057	pabpc1l	68	90.745	Gambusia_affinis
ENSPREG00000015886	pabpc1l	99	93.674	ENSGACG00000002792	pabpc1l	66	93.674	Gasterosteus_aculeatus
ENSPREG00000015886	pabpc1l	100	81.643	ENSGAGG00000000589	PABPC1L	75	81.643	Gopherus_agassizii
ENSPREG00000015886	pabpc1l	99	76.513	ENSGGOG00000004584	PABPC1L	67	76.513	Gorilla_gorilla
ENSPREG00000015886	pabpc1l	100	94.903	ENSHBUG00000006134	pabpc1l	73	94.903	Haplochromis_burtoni
ENSPREG00000015886	pabpc1l	99	74.877	ENSHGLG00000008434	PABPC1L	66	74.877	Heterocephalus_glaber_female
ENSPREG00000015886	pabpc1l	99	74.877	ENSHGLG00100012151	PABPC1L	66	74.877	Heterocephalus_glaber_male
ENSPREG00000015886	pabpc1l	88	86.517	ENSHGLG00100019506	-	100	86.517	Heterocephalus_glaber_male
ENSPREG00000015886	pabpc1l	100	91.505	ENSHCOG00000009270	pabpc1l	72	91.505	Hippocampus_comes
ENSPREG00000015886	pabpc1l	89	59.162	ENSIPUG00000006780	-	93	59.162	Ictalurus_punctatus
ENSPREG00000015886	pabpc1l	99	85.956	ENSIPUG00000012602	pabpc1l	71	85.956	Ictalurus_punctatus
ENSPREG00000015886	pabpc1l	65	59.231	ENSIPUG00000005537	-	100	59.231	Ictalurus_punctatus
ENSPREG00000015886	pabpc1l	89	61.326	ENSIPUG00000006760	-	91	61.326	Ictalurus_punctatus
ENSPREG00000015886	pabpc1l	99	76.513	ENSSTOG00000003739	PABPC1L	67	76.513	Ictidomys_tridecemlineatus
ENSPREG00000015886	pabpc1l	99	59.420	ENSJJAG00000022406	Pabpc1l	62	55.474	Jaculus_jaculus
ENSPREG00000015886	pabpc1l	99	94.891	ENSKMAG00000016847	pabpc1l	73	94.891	Kryptolebias_marmoratus
ENSPREG00000015886	pabpc1l	99	92.944	ENSLBEG00000010084	pabpc1l	69	92.944	Labrus_bergylta
ENSPREG00000015886	pabpc1l	99	84.019	ENSLACG00000005762	PABPC1L	75	84.019	Latimeria_chalumnae
ENSPREG00000015886	pabpc1l	99	89.104	ENSLOCG00000007519	pabpc1l	65	89.104	Lepisosteus_oculatus
ENSPREG00000015886	pabpc1l	99	76.271	ENSLAFG00000003553	PABPC1L	66	76.271	Loxodonta_africana
ENSPREG00000015886	pabpc1l	99	76.998	ENSMFAG00000040365	PABPC1L	67	76.998	Macaca_fascicularis
ENSPREG00000015886	pabpc1l	99	76.998	ENSMNEG00000032298	PABPC1L	67	76.998	Macaca_nemestrina
ENSPREG00000015886	pabpc1l	99	76.998	ENSMLEG00000043139	PABPC1L	67	76.998	Mandrillus_leucophaeus
ENSPREG00000015886	pabpc1l	99	93.917	ENSMAMG00000011854	pabpc1l	67	93.917	Mastacembelus_armatus
ENSPREG00000015886	pabpc1l	99	95.134	ENSMZEG00005023713	pabpc1l	66	95.134	Maylandia_zebra
ENSPREG00000015886	pabpc1l	99	82.082	ENSMGAG00000003674	PABPC1L	66	82.082	Meleagris_gallopavo
ENSPREG00000015886	pabpc1l	100	71.845	ENSMOCG00000013186	Pabpc1l	67	71.845	Microtus_ochrogaster
ENSPREG00000015886	pabpc1l	99	93.187	ENSMMOG00000020574	-	90	96.923	Mola_mola
ENSPREG00000015886	pabpc1l	100	79.710	ENSMODG00000016198	PABPC1L	70	79.710	Monodelphis_domestica
ENSPREG00000015886	pabpc1l	99	92.944	ENSMALG00000021622	pabpc1l	68	92.944	Monopterus_albus
ENSPREG00000015886	pabpc1l	99	71.429	MGP_CAROLIEiJ_G0024627	Pabpc1l	67	71.429	Mus_caroli
ENSPREG00000015886	pabpc1l	99	71.429	ENSMUSG00000054582	Pabpc1l	67	71.429	Mus_musculus
ENSPREG00000015886	pabpc1l	99	71.429	MGP_PahariEiJ_G0026071	Pabpc1l	67	71.429	Mus_pahari
ENSPREG00000015886	pabpc1l	99	71.429	MGP_SPRETEiJ_G0025549	Pabpc1l	67	71.429	Mus_spretus
ENSPREG00000015886	pabpc1l	99	77.966	ENSMPUG00000017646	PABPC1L	67	77.966	Mustela_putorius_furo
ENSPREG00000015886	pabpc1l	99	75.060	ENSMLUG00000006324	PABPC1L	66	75.060	Myotis_lucifugus
ENSPREG00000015886	pabpc1l	99	73.123	ENSNGAG00000010458	Pabpc1l	67	73.123	Nannospalax_galili
ENSPREG00000015886	pabpc1l	100	94.903	ENSNBRG00000016633	pabpc1l	76	95.276	Neolamprologus_brichardi
ENSPREG00000015886	pabpc1l	99	77.240	ENSMEUG00000007905	-	67	77.240	Notamacropus_eugenii
ENSPREG00000015886	pabpc1l	99	76.029	ENSOPRG00000011846	PABPC1L	67	76.029	Ochotona_princeps
ENSPREG00000015886	pabpc1l	99	74.334	ENSODEG00000015482	PABPC1L	76	74.334	Octodon_degus
ENSPREG00000015886	pabpc1l	86	80.625	ENSODEG00000002920	-	97	80.625	Octodon_degus
ENSPREG00000015886	pabpc1l	99	95.134	ENSONIG00000017314	pabpc1l	66	95.134	Oreochromis_niloticus
ENSPREG00000015886	pabpc1l	99	69.471	ENSOANG00000015793	-	74	69.471	Ornithorhynchus_anatinus
ENSPREG00000015886	pabpc1l	95	78.372	ENSOCUG00000003005	PABPC1L	61	78.372	Oryctolagus_cuniculus
ENSPREG00000015886	pabpc1l	99	92.944	ENSORLG00000010322	pabpc1l	78	92.727	Oryzias_latipes
ENSPREG00000015886	pabpc1l	99	92.944	ENSORLG00020021193	pabpc1l	78	92.727	Oryzias_latipes_hni
ENSPREG00000015886	pabpc1l	99	92.944	ENSORLG00015017018	pabpc1l	78	92.727	Oryzias_latipes_hsok
ENSPREG00000015886	pabpc1l	99	87.500	ENSOMEG00000010789	pabpc1l	67	87.500	Oryzias_melastigma
ENSPREG00000015886	pabpc1l	99	76.513	ENSOGAG00000032999	PABPC1L	66	76.513	Otolemur_garnettii
ENSPREG00000015886	pabpc1l	99	77.724	ENSOARG00000004578	PABPC1L	67	77.724	Ovis_aries
ENSPREG00000015886	pabpc1l	99	76.755	ENSPPAG00000039677	PABPC1L	67	76.755	Pan_paniscus
ENSPREG00000015886	pabpc1l	99	67.284	ENSPPRG00000019327	-	98	67.284	Panthera_pardus
ENSPREG00000015886	pabpc1l	98	77.340	ENSPTIG00000006524	PABPC1L	67	77.340	Panthera_tigris_altaica
ENSPREG00000015886	pabpc1l	94	76.235	ENSPTRG00000013531	PABPC1L	98	76.235	Pan_troglodytes
ENSPREG00000015886	pabpc1l	99	76.998	ENSPANG00000018788	PABPC1L	67	76.998	Papio_anubis
ENSPREG00000015886	pabpc1l	99	85.680	ENSPKIG00000007322	pabpc1l	72	80.045	Paramormyrops_kingsleyae
ENSPREG00000015886	pabpc1l	79	83.969	ENSPKIG00000016810	-	93	83.969	Paramormyrops_kingsleyae
ENSPREG00000015886	pabpc1l	99	81.840	ENSPSIG00000013289	PABPC1L	98	81.840	Pelodiscus_sinensis
ENSPREG00000015886	pabpc1l	90	96.970	ENSPMGG00000023117	pabpc1l	97	94.884	Periophthalmus_magnuspinnatus
ENSPREG00000015886	pabpc1l	98	88.272	ENSPMGG00000023121	-	80	88.272	Periophthalmus_magnuspinnatus
ENSPREG00000015886	pabpc1l	100	71.602	ENSPEMG00000020671	Pabpc1l	67	71.359	Peromyscus_maniculatus_bairdii
ENSPREG00000015886	pabpc1l	99	99.027	ENSPFOG00000013241	pabpc1l	67	99.027	Poecilia_formosa
ENSPREG00000015886	pabpc1l	99	98.783	ENSPLAG00000017490	-	73	98.783	Poecilia_latipinna
ENSPREG00000015886	pabpc1l	94	99.231	ENSPLAG00000023686	-	92	99.231	Poecilia_latipinna
ENSPREG00000015886	pabpc1l	99	99.027	ENSPMEG00000007677	pabpc1l	67	99.027	Poecilia_mexicana
ENSPREG00000015886	pabpc1l	79	99.231	ENSPMEG00000009185	-	88	99.231	Poecilia_mexicana
ENSPREG00000015886	pabpc1l	99	76.755	ENSPPYG00000011042	PABPC1L	67	76.755	Pongo_abelii
ENSPREG00000015886	pabpc1l	91	85.938	ENSPCAG00000011787	-	75	85.938	Procavia_capensis
ENSPREG00000015886	pabpc1l	99	76.755	ENSPCOG00000020630	PABPC1L	68	76.755	Propithecus_coquereli
ENSPREG00000015886	pabpc1l	99	75.545	ENSPVAG00000012663	PABPC1L	67	75.545	Pteropus_vampyrus
ENSPREG00000015886	pabpc1l	100	95.146	ENSPNYG00000004101	pabpc1l	76	95.276	Pundamilia_nyererei
ENSPREG00000015886	pabpc1l	99	78.208	ENSPNAG00000021248	pabpc1l	64	78.208	Pygocentrus_nattereri
ENSPREG00000015886	pabpc1l	100	71.117	ENSRNOG00000012750	Pabpc1l	67	71.117	Rattus_norvegicus
ENSPREG00000015886	pabpc1l	99	76.755	ENSRBIG00000035381	PABPC1L	67	76.755	Rhinopithecus_bieti
ENSPREG00000015886	pabpc1l	99	76.513	ENSRROG00000044498	PABPC1L	67	76.513	Rhinopithecus_roxellana
ENSPREG00000015886	pabpc1l	99	75.787	ENSSBOG00000009532	-	67	75.787	Saimiri_boliviensis_boliviensis
ENSPREG00000015886	pabpc1l	98	74.386	ENSSHAG00000011446	PABPC1L	59	74.386	Sarcophilus_harrisii
ENSPREG00000015886	pabpc1l	99	86.441	ENSSFOG00015017304	pabpc1l	66	86.441	Scleropages_formosus
ENSPREG00000015886	pabpc1l	99	94.161	ENSSMAG00000010516	pabpc1l	98	99.225	Scophthalmus_maximus
ENSPREG00000015886	pabpc1l	99	93.917	ENSSDUG00000014743	pabpc1l	67	93.917	Seriola_dumerili
ENSPREG00000015886	pabpc1l	100	93.607	ENSSLDG00000006981	pabpc1l	98	93.607	Seriola_lalandi_dorsalis
ENSPREG00000015886	pabpc1l	99	81.598	ENSSPUG00000004233	PABPC1L	65	81.598	Sphenodon_punctatus
ENSPREG00000015886	pabpc1l	99	89.294	ENSSPAG00000017137	pabpc1l	74	89.294	Stegastes_partitus
ENSPREG00000015886	pabpc1l	99	76.755	ENSSSCG00000007382	PABPC1L	68	76.755	Sus_scrofa
ENSPREG00000015886	pabpc1l	99	80.000	ENSTGUG00000005114	PABPC1L	67	80.000	Taeniopygia_guttata
ENSPREG00000015886	pabpc1l	99	93.187	ENSTRUG00000011085	pabpc1l	67	93.187	Takifugu_rubripes
ENSPREG00000015886	pabpc1l	99	90.291	ENSTNIG00000017903	pabpc1l	65	90.291	Tetraodon_nigroviridis
ENSPREG00000015886	pabpc1l	99	75.862	ENSTTRG00000007618	PABPC1L	69	75.862	Tursiops_truncatus
ENSPREG00000015886	pabpc1l	99	77.240	ENSUAMG00000017682	PABPC1L	70	77.240	Ursus_americanus
ENSPREG00000015886	pabpc1l	99	74.157	ENSUMAG00000025436	PABPC1L	91	74.157	Ursus_maritimus
ENSPREG00000015886	pabpc1l	99	77.240	ENSVVUG00000018939	PABPC1L	69	77.240	Vulpes_vulpes
ENSPREG00000015886	pabpc1l	99	78.325	ENSXETG00000022831	pabpc1l	64	78.325	Xenopus_tropicalis
ENSPREG00000015886	pabpc1l	99	98.054	ENSXCOG00000005459	pabpc1l	99	94.326	Xiphophorus_couchianus
ENSPREG00000015886	pabpc1l	99	98.054	ENSXMAG00000017135	pabpc1l	73	98.054	Xiphophorus_maculatus