EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPREG00000016298 (Gene tree)
Gene ID: 103481897
Gene Symbol: a1cf
Alias: acf
Full Name: APOBEC1 complementation factor
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Minus strand
Length: 15447 bases
Position: chrLG19:19836432-19851878
Accession: 103481897
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000024156	DND1_DSRM	PF14709.7	6.9e-26	1	1
ENSPREP00000024156	RRM_1	PF00076.22	2.6e-40	1	3
ENSPREP00000024156	RRM_1	PF00076.22	2.6e-40	2	3
ENSPREP00000024156	RRM_1	PF00076.22	2.6e-40	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000024403	-	5615	XM_008437694	ENSPREP00000024156	614 (aa)	XP_008435916	UPI0004A407CB

Gene Model

Click here to download ENSPREG00000016298's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000016298's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPREG00000016298	a1cf	86	65.424	ENSPREG00000014464	rbm46	86	65.424
ENSPREG00000016298	a1cf	87	52.897	ENSPREG00000008456	rbm47	58	70.627

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000016298	a1cf	100	77.036	ENSG00000148584	A1CF	100	86.139	Homo_sapiens
ENSPREG00000016298	a1cf	100	84.345	ENSAPOG00000008259	a1cf	100	83.713	Acanthochromis_polyacanthus
ENSPREG00000016298	a1cf	100	76.221	ENSAMEG00000000523	A1CF	100	75.733	Ailuropoda_melanoleuca
ENSPREG00000016298	a1cf	100	86.992	ENSACIG00000008632	a1cf	100	88.780	Amphilophus_citrinellus
ENSPREG00000016298	a1cf	100	85.993	ENSAOCG00000023744	a1cf	97	89.459	Amphiprion_ocellaris
ENSPREG00000016298	a1cf	100	87.459	ENSAPEG00000009537	a1cf	100	87.296	Amphiprion_percula
ENSPREG00000016298	a1cf	100	90.065	ENSATEG00000013720	a1cf	100	90.065	Anabas_testudineus
ENSPREG00000016298	a1cf	100	77.362	ENSAPLG00000002964	A1CF	100	75.733	Anas_platyrhynchos
ENSPREG00000016298	a1cf	100	76.059	ENSACAG00000015269	A1CF	100	75.407	Anolis_carolinensis
ENSPREG00000016298	a1cf	100	76.873	ENSANAG00000019974	A1CF	100	75.407	Aotus_nancymaae
ENSPREG00000016298	a1cf	100	84.553	ENSACLG00000017428	a1cf	100	84.065	Astatotilapia_calliptera
ENSPREG00000016298	a1cf	100	76.537	ENSAMXG00000018180	a1cf	100	75.566	Astyanax_mexicanus
ENSPREG00000016298	a1cf	100	76.384	ENSBTAG00000021195	A1CF	100	75.709	Bos_taurus
ENSPREG00000016298	a1cf	100	77.850	ENSCJAG00000005045	A1CF	100	76.384	Callithrix_jacchus
ENSPREG00000016298	a1cf	100	76.710	ENSCAFG00000015581	A1CF	100	75.407	Canis_familiaris
ENSPREG00000016298	a1cf	100	76.710	ENSCAFG00020026421	A1CF	98	81.940	Canis_lupus_dingo
ENSPREG00000016298	a1cf	100	78.013	ENSCHIG00000020411	A1CF	100	76.710	Capra_hircus
ENSPREG00000016298	a1cf	94	77.069	ENSTSYG00000001755	A1CF	100	74.483	Carlito_syrichta
ENSPREG00000016298	a1cf	100	72.595	ENSCAPG00000017386	A1CF	100	74.441	Cavia_aperea
ENSPREG00000016298	a1cf	100	76.710	ENSCPOG00000009807	A1CF	100	75.244	Cavia_porcellus
ENSPREG00000016298	a1cf	100	77.850	ENSCCAG00000018168	A1CF	100	76.059	Cebus_capucinus
ENSPREG00000016298	a1cf	100	76.059	ENSCATG00000043715	A1CF	100	74.593	Cercocebus_atys
ENSPREG00000016298	a1cf	100	76.384	ENSCLAG00000010424	A1CF	100	74.430	Chinchilla_lanigera
ENSPREG00000016298	a1cf	100	77.036	ENSCSAG00000007032	A1CF	100	75.570	Chlorocebus_sabaeus
ENSPREG00000016298	a1cf	98	73.311	ENSCHOG00000009089	A1CF	94	73.973	Choloepus_hoffmanni
ENSPREG00000016298	a1cf	100	78.013	ENSCPBG00000026464	A1CF	100	76.384	Chrysemys_picta_bellii
ENSPREG00000016298	a1cf	100	77.199	ENSCANG00000038032	A1CF	100	75.733	Colobus_angolensis_palliatus
ENSPREG00000016298	a1cf	100	76.710	ENSCGRG00001017413	A1cf	100	75.570	Cricetulus_griseus_chok1gshd
ENSPREG00000016298	a1cf	100	76.059	ENSCGRG00000017332	A1cf	100	75.244	Cricetulus_griseus_crigri
ENSPREG00000016298	a1cf	100	85.945	ENSCSEG00000002361	a1cf	100	85.945	Cynoglossus_semilaevis
ENSPREG00000016298	a1cf	100	93.974	ENSCVAG00000010520	a1cf	100	93.974	Cyprinodon_variegatus
ENSPREG00000016298	a1cf	100	81.922	ENSDARG00000002968	a1cf	100	80.293	Danio_rerio
ENSPREG00000016298	a1cf	100	77.199	ENSDNOG00000002829	A1CF	100	75.733	Dasypus_novemcinctus
ENSPREG00000016298	a1cf	81	83.696	ENSETEG00000012527	A1CF	81	83.696	Echinops_telfairi
ENSPREG00000016298	a1cf	100	77.398	ENSEASG00005012924	A1CF	100	76.098	Equus_asinus_asinus
ENSPREG00000016298	a1cf	100	77.073	ENSECAG00000010424	A1CF	100	75.772	Equus_caballus
ENSPREG00000016298	a1cf	79	66.116	ENSEEUG00000000013	A1CF	97	65.310	Erinaceus_europaeus
ENSPREG00000016298	a1cf	100	82.248	ENSELUG00000003159	a1cf	100	81.270	Esox_lucius
ENSPREG00000016298	a1cf	100	75.407	ENSFCAG00000011179	A1CF	100	74.430	Felis_catus
ENSPREG00000016298	a1cf	100	76.873	ENSFALG00000013183	A1CF	100	75.407	Ficedula_albicollis
ENSPREG00000016298	a1cf	100	76.059	ENSFDAG00000019371	A1CF	100	74.593	Fukomys_damarensis
ENSPREG00000016298	a1cf	100	87.459	ENSFHEG00000019652	a1cf	96	95.312	Fundulus_heteroclitus
ENSPREG00000016298	a1cf	100	79.479	ENSGMOG00000018943	a1cf	100	78.502	Gadus_morhua
ENSPREG00000016298	a1cf	96	76.740	ENSGALG00000003765	A1CF	96	75.731	Gallus_gallus
ENSPREG00000016298	a1cf	100	88.274	ENSGAFG00000014868	a1cf	100	87.785	Gambusia_affinis
ENSPREG00000016298	a1cf	100	86.319	ENSGACG00000010241	a1cf	100	85.342	Gasterosteus_aculeatus
ENSPREG00000016298	a1cf	96	76.910	ENSGAGG00000016508	A1CF	98	75.212	Gopherus_agassizii
ENSPREG00000016298	a1cf	100	77.036	ENSGGOG00000009670	A1CF	100	75.570	Gorilla_gorilla
ENSPREG00000016298	a1cf	100	87.317	ENSHBUG00000021959	a1cf	100	87.480	Haplochromis_burtoni
ENSPREG00000016298	a1cf	100	77.362	ENSHGLG00000008955	A1CF	100	75.244	Heterocephalus_glaber_female
ENSPREG00000016298	a1cf	100	76.710	ENSHGLG00100000518	A1CF	100	74.593	Heterocephalus_glaber_male
ENSPREG00000016298	a1cf	100	74.437	ENSHCOG00000017669	a1cf	100	76.367	Hippocampus_comes
ENSPREG00000016298	a1cf	89	83.971	ENSIPUG00000010367	a1cf	99	81.547	Ictalurus_punctatus
ENSPREG00000016298	a1cf	100	91.086	ENSKMAG00000006568	a1cf	100	89.303	Kryptolebias_marmoratus
ENSPREG00000016298	a1cf	99	89.902	ENSLBEG00000020994	a1cf	99	89.902	Labrus_bergylta
ENSPREG00000016298	a1cf	100	77.850	ENSLACG00000008061	A1CF	100	75.896	Latimeria_chalumnae
ENSPREG00000016298	a1cf	100	82.573	ENSLOCG00000006302	a1cf	100	80.456	Lepisosteus_oculatus
ENSPREG00000016298	a1cf	100	77.362	ENSLAFG00000015462	A1CF	100	76.710	Loxodonta_africana
ENSPREG00000016298	a1cf	100	76.059	ENSMFAG00000035948	A1CF	100	74.593	Macaca_fascicularis
ENSPREG00000016298	a1cf	100	76.059	ENSMMUG00000007077	A1CF	100	74.593	Macaca_mulatta
ENSPREG00000016298	a1cf	100	75.896	ENSMNEG00000031454	A1CF	100	74.430	Macaca_nemestrina
ENSPREG00000016298	a1cf	100	77.199	ENSMLEG00000037223	A1CF	100	75.733	Mandrillus_leucophaeus
ENSPREG00000016298	a1cf	100	87.154	ENSMAMG00000010402	a1cf	100	86.016	Mastacembelus_armatus
ENSPREG00000016298	a1cf	100	86.645	ENSMZEG00005013245	a1cf	100	85.505	Maylandia_zebra
ENSPREG00000016298	a1cf	100	76.748	ENSMGAG00000001507	A1CF	100	75.285	Meleagris_gallopavo
ENSPREG00000016298	a1cf	100	76.221	ENSMAUG00000007422	A1cf	100	75.244	Mesocricetus_auratus
ENSPREG00000016298	a1cf	100	75.162	ENSMICG00000003377	A1CF	100	74.513	Microcebus_murinus
ENSPREG00000016298	a1cf	100	76.221	ENSMOCG00000021536	A1cf	100	74.756	Microtus_ochrogaster
ENSPREG00000016298	a1cf	100	76.059	ENSMMOG00000009422	a1cf	100	74.919	Mola_mola
ENSPREG00000016298	a1cf	92	76.241	ENSMODG00000016478	A1CF	99	74.468	Monodelphis_domestica
ENSPREG00000016298	a1cf	100	78.803	ENSMALG00000012992	a1cf	100	78.317	Monopterus_albus
ENSPREG00000016298	a1cf	100	76.221	MGP_CAROLIEiJ_G0022873	A1cf	100	74.756	Mus_caroli
ENSPREG00000016298	a1cf	100	76.221	ENSMUSG00000052595	A1cf	99	81.771	Mus_musculus
ENSPREG00000016298	a1cf	100	75.407	MGP_PahariEiJ_G0014366	A1cf	100	73.941	Mus_pahari
ENSPREG00000016298	a1cf	100	76.059	MGP_SPRETEiJ_G0023792	A1cf	100	74.593	Mus_spretus
ENSPREG00000016298	a1cf	100	72.150	ENSMPUG00000016971	A1CF	100	70.847	Mustela_putorius_furo
ENSPREG00000016298	a1cf	100	77.036	ENSMLUG00000016071	A1CF	100	75.896	Myotis_lucifugus
ENSPREG00000016298	a1cf	100	77.199	ENSNGAG00000015136	A1cf	100	75.733	Nannospalax_galili
ENSPREG00000016298	a1cf	100	87.480	ENSNBRG00000001712	a1cf	100	87.642	Neolamprologus_brichardi
ENSPREG00000016298	a1cf	100	77.524	ENSNLEG00000012028	A1CF	100	76.059	Nomascus_leucogenys
ENSPREG00000016298	a1cf	94	76.207	ENSMEUG00000015909	A1CF	100	73.793	Notamacropus_eugenii
ENSPREG00000016298	a1cf	88	70.055	ENSOPRG00000010667	A1CF	97	68.545	Ochotona_princeps
ENSPREG00000016298	a1cf	100	87.967	ENSONIG00000019105	a1cf	100	87.317	Oreochromis_niloticus
ENSPREG00000016298	a1cf	78	76.812	ENSOANG00000007360	A1CF	99	76.190	Ornithorhynchus_anatinus
ENSPREG00000016298	a1cf	100	75.244	ENSOCUG00000011587	A1CF	100	73.779	Oryctolagus_cuniculus
ENSPREG00000016298	a1cf	100	85.016	ENSORLG00000013342	a1cf	100	85.016	Oryzias_latipes
ENSPREG00000016298	a1cf	100	87.480	ENSORLG00020000586	a1cf	100	88.130	Oryzias_latipes_hni
ENSPREG00000016298	a1cf	100	87.480	ENSORLG00015018569	a1cf	100	88.130	Oryzias_latipes_hsok
ENSPREG00000016298	a1cf	100	86.645	ENSOMEG00000013531	a1cf	100	85.342	Oryzias_melastigma
ENSPREG00000016298	a1cf	100	76.384	ENSOGAG00000012884	A1CF	100	75.733	Otolemur_garnettii
ENSPREG00000016298	a1cf	100	77.687	ENSOARG00000013695	A1CF	100	76.384	Ovis_aries
ENSPREG00000016298	a1cf	95	76.672	ENSPPAG00000028115	A1CF	99	78.824	Pan_paniscus
ENSPREG00000016298	a1cf	100	76.547	ENSPPRG00000012180	A1CF	100	75.570	Panthera_pardus
ENSPREG00000016298	a1cf	100	76.547	ENSPTIG00000021223	A1CF	100	75.570	Panthera_tigris_altaica
ENSPREG00000016298	a1cf	100	77.036	ENSPTRG00000002508	A1CF	100	75.570	Pan_troglodytes
ENSPREG00000016298	a1cf	100	76.059	ENSPANG00000021988	A1CF	100	74.593	Papio_anubis
ENSPREG00000016298	a1cf	100	80.945	ENSPKIG00000025176	a1cf	100	79.967	Paramormyrops_kingsleyae
ENSPREG00000016298	a1cf	100	76.710	ENSPSIG00000010318	A1CF	100	75.244	Pelodiscus_sinensis
ENSPREG00000016298	a1cf	98	69.371	ENSPMGG00000013359	a1cf	99	69.371	Periophthalmus_magnuspinnatus
ENSPREG00000016298	a1cf	100	77.036	ENSPEMG00000015021	A1cf	100	75.570	Peromyscus_maniculatus_bairdii
ENSPREG00000016298	a1cf	100	76.059	ENSPCIG00000002175	A1CF	100	74.430	Phascolarctos_cinereus
ENSPREG00000016298	a1cf	100	98.208	ENSPFOG00000007437	-	100	98.208	Poecilia_formosa
ENSPREG00000016298	a1cf	100	98.208	ENSPFOG00000006683	a1cf	100	98.208	Poecilia_formosa
ENSPREG00000016298	a1cf	100	96.906	ENSPLAG00000000026	a1cf	100	96.906	Poecilia_latipinna
ENSPREG00000016298	a1cf	100	96.906	ENSPLAG00000001210	-	100	96.906	Poecilia_latipinna
ENSPREG00000016298	a1cf	100	87.134	ENSPMEG00000000921	a1cf	100	87.134	Poecilia_mexicana
ENSPREG00000016298	a1cf	100	88.436	ENSPMEG00000015529	-	100	88.436	Poecilia_mexicana
ENSPREG00000016298	a1cf	100	76.384	ENSPPYG00000002819	A1CF	100	74.919	Pongo_abelii
ENSPREG00000016298	a1cf	80	60.081	ENSPCAG00000006463	A1CF	79	58.656	Procavia_capensis
ENSPREG00000016298	a1cf	100	76.384	ENSPCOG00000024172	A1CF	100	75.570	Propithecus_coquereli
ENSPREG00000016298	a1cf	100	88.943	ENSPNYG00000017944	a1cf	100	89.106	Pundamilia_nyererei
ENSPREG00000016298	a1cf	100	81.981	ENSPNAG00000007704	a1cf	100	81.169	Pygocentrus_nattereri
ENSPREG00000016298	a1cf	100	75.407	ENSRNOG00000033195	A1cf	100	73.941	Rattus_norvegicus
ENSPREG00000016298	a1cf	100	71.429	ENSRBIG00000042892	A1CF	100	72.212	Rhinopithecus_bieti
ENSPREG00000016298	a1cf	100	77.199	ENSRROG00000041398	A1CF	100	75.733	Rhinopithecus_roxellana
ENSPREG00000016298	a1cf	100	77.850	ENSSBOG00000021930	A1CF	100	76.384	Saimiri_boliviensis_boliviensis
ENSPREG00000016298	a1cf	100	77.036	ENSSHAG00000005096	A1CF	100	74.756	Sarcophilus_harrisii
ENSPREG00000016298	a1cf	100	81.169	ENSSFOG00015011774	a1cf	100	80.519	Scleropages_formosus
ENSPREG00000016298	a1cf	100	88.799	ENSSMAG00000013271	a1cf	100	88.799	Scophthalmus_maximus
ENSPREG00000016298	a1cf	100	89.577	ENSSDUG00000013930	a1cf	100	89.251	Seriola_dumerili
ENSPREG00000016298	a1cf	100	81.596	ENSSLDG00000004290	a1cf	100	81.759	Seriola_lalandi_dorsalis
ENSPREG00000016298	a1cf	95	68.096	ENSSARG00000005940	A1CF	95	67.581	Sorex_araneus
ENSPREG00000016298	a1cf	95	76.410	ENSSPUG00000006797	A1CF	95	74.490	Sphenodon_punctatus
ENSPREG00000016298	a1cf	100	77.687	ENSSSCG00000010431	A1CF	100	76.384	Sus_scrofa
ENSPREG00000016298	a1cf	100	78.374	ENSTGUG00000005090	A1CF	100	76.585	Taeniopygia_guttata
ENSPREG00000016298	a1cf	100	87.317	ENSTRUG00000001982	a1cf	100	87.805	Takifugu_rubripes
ENSPREG00000016298	a1cf	100	86.526	ENSTNIG00000003580	a1cf	100	86.526	Tetraodon_nigroviridis
ENSPREG00000016298	a1cf	95	72.041	ENSTTRG00000013190	A1CF	94	70.669	Tursiops_truncatus
ENSPREG00000016298	a1cf	100	75.896	ENSUAMG00000020065	A1CF	100	74.430	Ursus_americanus
ENSPREG00000016298	a1cf	100	76.547	ENSUMAG00000011162	A1CF	100	75.081	Ursus_maritimus
ENSPREG00000016298	a1cf	87	73.234	ENSVPAG00000006130	A1CF	86	71.561	Vicugna_pacos
ENSPREG00000016298	a1cf	100	75.896	ENSVVUG00000002504	A1CF	100	74.430	Vulpes_vulpes
ENSPREG00000016298	a1cf	100	72.150	ENSXETG00000006611	a1cf	100	71.336	Xenopus_tropicalis
ENSPREG00000016298	a1cf	100	96.091	ENSXCOG00000003302	a1cf	100	96.091	Xiphophorus_couchianus
ENSPREG00000016298	a1cf	100	97.394	ENSXMAG00000016703	a1cf	100	97.394	Xiphophorus_maculatus