EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPREG00000016307 (Gene tree)
Gene ID: 103472025
Gene Symbol: cpsf1
Alias: wu:fb24c01
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Plus strand
Length: 13873 bases
Position: chrLG11:4234585-4248457
Accession: 103472025
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000024232	CPSF_A	PF03178.15	8.4e-91	1	1
ENSPREP00000024291	CPSF_A	PF03178.15	4.1e-90	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000024537	-	4338	-	ENSPREP00000024291	1445 (aa)	-	-
ENSPRET00000024478	-	4438	XM_008421374	ENSPREP00000024232	1471 (aa)	XP_008419596	UPI0004A373EB

Gene Model

Click here to download ENSPREG00000016307's gene model file

Pathways

Pathway ID	Pathway Name	Source
pret03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000016307's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000016307	cpsf1	100	76.065	ENSG00000071894	CPSF1	100	76.133	Homo_sapiens
ENSPREG00000016307	cpsf1	100	91.236	ENSAPOG00000019621	cpsf1	100	91.168	Acanthochromis_polyacanthus
ENSPREG00000016307	cpsf1	97	75.401	ENSAMEG00000005557	CPSF1	99	75.411	Ailuropoda_melanoleuca
ENSPREG00000016307	cpsf1	100	86.721	ENSACIG00000006112	cpsf1	100	86.721	Amphilophus_citrinellus
ENSPREG00000016307	cpsf1	100	87.635	ENSAOCG00000007120	cpsf1	100	87.635	Amphiprion_ocellaris
ENSPREG00000016307	cpsf1	100	88.581	ENSAPEG00000005755	cpsf1	100	88.581	Amphiprion_percula
ENSPREG00000016307	cpsf1	100	89.824	ENSATEG00000011097	cpsf1	100	90.434	Anabas_testudineus
ENSPREG00000016307	cpsf1	93	73.420	ENSACAG00000009655	CPSF1	100	73.057	Anolis_carolinensis
ENSPREG00000016307	cpsf1	100	76.268	ENSANAG00000036514	CPSF1	100	76.403	Aotus_nancymaae
ENSPREG00000016307	cpsf1	99	90.199	ENSACLG00000012231	cpsf1	99	89.767	Astatotilapia_calliptera
ENSPREG00000016307	cpsf1	100	76.351	ENSAMXG00000008485	cpsf1	100	76.171	Astyanax_mexicanus
ENSPREG00000016307	cpsf1	100	74.967	ENSBTAG00000008355	CPSF1	100	75.736	Bos_taurus
ENSPREG00000016307	cpsf1	100	32.060	WBGene00022301	cpsf-1	99	40.678	Caenorhabditis_elegans
ENSPREG00000016307	cpsf1	100	76.335	ENSCJAG00000021421	CPSF1	100	76.200	Callithrix_jacchus
ENSPREG00000016307	cpsf1	97	76.853	ENSCAFG00000001600	CPSF1	100	76.399	Canis_familiaris
ENSPREG00000016307	cpsf1	100	76.367	ENSCAFG00020020821	CPSF1	100	76.435	Canis_lupus_dingo
ENSPREG00000016307	cpsf1	100	72.869	ENSCHIG00000015833	CPSF1	100	72.684	Capra_hircus
ENSPREG00000016307	cpsf1	100	76.606	ENSTSYG00000028560	CPSF1	100	76.852	Carlito_syrichta
ENSPREG00000016307	cpsf1	97	75.908	ENSCAPG00000014921	CPSF1	99	75.908	Cavia_aperea
ENSPREG00000016307	cpsf1	100	75.254	ENSCPOG00000011448	CPSF1	100	75.254	Cavia_porcellus
ENSPREG00000016307	cpsf1	100	76.475	ENSCCAG00000037658	CPSF1	100	76.335	Cebus_capucinus
ENSPREG00000016307	cpsf1	100	75.997	ENSCATG00000037234	CPSF1	99	77.612	Cercocebus_atys
ENSPREG00000016307	cpsf1	100	76.522	ENSCLAG00000012166	CPSF1	100	76.522	Chinchilla_lanigera
ENSPREG00000016307	cpsf1	100	76.335	ENSCSAG00000008502	CPSF1	100	76.133	Chlorocebus_sabaeus
ENSPREG00000016307	cpsf1	99	78.689	ENSCPBG00000018910	CPSF1	96	78.689	Chrysemys_picta_bellii
ENSPREG00000016307	cpsf1	96	47.789	ENSCING00000000514	-	100	47.509	Ciona_intestinalis
ENSPREG00000016307	cpsf1	99	47.981	ENSCSAVG00000002293	-	99	49.767	Ciona_savignyi
ENSPREG00000016307	cpsf1	98	73.444	ENSCANG00000032760	CPSF1	100	76.389	Colobus_angolensis_palliatus
ENSPREG00000016307	cpsf1	100	76.116	ENSCGRG00001016344	Cpsf1	100	75.913	Cricetulus_griseus_chok1gshd
ENSPREG00000016307	cpsf1	100	74.222	ENSCGRG00000003118	Cpsf1	100	73.951	Cricetulus_griseus_crigri
ENSPREG00000016307	cpsf1	100	84.690	ENSCSEG00000013464	cpsf1	99	87.372	Cynoglossus_semilaevis
ENSPREG00000016307	cpsf1	86	90.933	ENSCVAG00000014059	cpsf1	100	86.111	Cyprinodon_variegatus
ENSPREG00000016307	cpsf1	100	84.157	ENSDARG00000034178	cpsf1	100	83.829	Danio_rerio
ENSPREG00000016307	cpsf1	60	73.958	ENSDNOG00000043654	CPSF1	97	73.958	Dasypus_novemcinctus
ENSPREG00000016307	cpsf1	97	76.681	ENSDORG00000006278	Cpsf1	99	76.681	Dipodomys_ordii
ENSPREG00000016307	cpsf1	100	43.851	FBgn0024698	Cpsf160	100	43.817	Drosophila_melanogaster
ENSPREG00000016307	cpsf1	81	80.537	ENSETEG00000006022	CPSF1	83	80.537	Echinops_telfairi
ENSPREG00000016307	cpsf1	100	76.367	ENSEASG00005010774	CPSF1	100	76.502	Equus_asinus_asinus
ENSPREG00000016307	cpsf1	100	76.300	ENSECAG00000022209	CPSF1	100	76.435	Equus_caballus
ENSPREG00000016307	cpsf1	100	76.181	ENSEEUG00000000471	CPSF1	100	76.248	Erinaceus_europaeus
ENSPREG00000016307	cpsf1	100	84.341	ENSELUG00000012271	cpsf1	100	84.397	Esox_lucius
ENSPREG00000016307	cpsf1	100	76.658	ENSFDAG00000016060	CPSF1	100	76.658	Fukomys_damarensis
ENSPREG00000016307	cpsf1	100	91.830	ENSFHEG00000016801	cpsf1	100	91.762	Fundulus_heteroclitus
ENSPREG00000016307	cpsf1	100	84.392	ENSGMOG00000000796	cpsf1	100	84.324	Gadus_morhua
ENSPREG00000016307	cpsf1	94	94.081	ENSGAFG00000018890	cpsf1	99	94.081	Gambusia_affinis
ENSPREG00000016307	cpsf1	100	87.744	ENSGACG00000008703	cpsf1	100	87.542	Gasterosteus_aculeatus
ENSPREG00000016307	cpsf1	100	76.534	ENSGAGG00000004276	CPSF1	98	79.870	Gopherus_agassizii
ENSPREG00000016307	cpsf1	100	76.116	ENSGGOG00000016185	CPSF1	100	76.184	Gorilla_gorilla
ENSPREG00000016307	cpsf1	100	87.967	ENSHBUG00000018900	cpsf1	100	88.035	Haplochromis_burtoni
ENSPREG00000016307	cpsf1	100	76.590	ENSHGLG00000016139	CPSF1	100	76.590	Heterocephalus_glaber_female
ENSPREG00000016307	cpsf1	100	76.522	ENSHGLG00100009750	CPSF1	100	76.522	Heterocephalus_glaber_male
ENSPREG00000016307	cpsf1	100	88.111	ENSHCOG00000018509	cpsf1	100	87.840	Hippocampus_comes
ENSPREG00000016307	cpsf1	100	80.608	ENSIPUG00000011259	cpsf1	100	80.608	Ictalurus_punctatus
ENSPREG00000016307	cpsf1	97	75.852	ENSSTOG00000009957	CPSF1	99	76.048	Ictidomys_tridecemlineatus
ENSPREG00000016307	cpsf1	100	76.522	ENSJJAG00000023002	Cpsf1	100	76.455	Jaculus_jaculus
ENSPREG00000016307	cpsf1	91	94.671	ENSKMAG00000001940	cpsf1	99	94.671	Kryptolebias_marmoratus
ENSPREG00000016307	cpsf1	100	88.647	ENSLBEG00000003601	cpsf1	100	88.783	Labrus_bergylta
ENSPREG00000016307	cpsf1	88	77.924	ENSLACG00000000233	CPSF1	92	77.924	Latimeria_chalumnae
ENSPREG00000016307	cpsf1	100	79.825	ENSLOCG00000008484	cpsf1	100	80.094	Lepisosteus_oculatus
ENSPREG00000016307	cpsf1	97	76.639	ENSLAFG00000022601	CPSF1	100	76.220	Loxodonta_africana
ENSPREG00000016307	cpsf1	100	75.997	ENSMFAG00000037013	CPSF1	99	77.612	Macaca_fascicularis
ENSPREG00000016307	cpsf1	100	75.997	ENSMMUG00000007380	CPSF1	98	78.914	Macaca_mulatta
ENSPREG00000016307	cpsf1	97	76.380	ENSMNEG00000043564	CPSF1	100	75.926	Macaca_nemestrina
ENSPREG00000016307	cpsf1	100	75.997	ENSMLEG00000043010	CPSF1	99	77.612	Mandrillus_leucophaeus
ENSPREG00000016307	cpsf1	100	90.353	ENSMAMG00000003803	cpsf1	100	90.761	Mastacembelus_armatus
ENSPREG00000016307	cpsf1	100	84.844	ENSMZEG00005001168	cpsf1	100	84.772	Maylandia_zebra
ENSPREG00000016307	cpsf1	100	76.049	ENSMAUG00000003601	Cpsf1	100	75.981	Mesocricetus_auratus
ENSPREG00000016307	cpsf1	100	76.387	ENSMICG00000015767	CPSF1	100	76.184	Microcebus_murinus
ENSPREG00000016307	cpsf1	100	76.455	ENSMOCG00000022758	Cpsf1	100	76.387	Microtus_ochrogaster
ENSPREG00000016307	cpsf1	100	87.810	ENSMMOG00000021245	cpsf1	100	87.754	Mola_mola
ENSPREG00000016307	cpsf1	100	76.840	ENSMODG00000010755	CPSF1	100	76.907	Monodelphis_domestica
ENSPREG00000016307	cpsf1	100	90.014	ENSMALG00000020545	cpsf1	100	89.810	Monopterus_albus
ENSPREG00000016307	cpsf1	100	76.387	MGP_CAROLIEiJ_G0019936	Cpsf1	100	76.387	Mus_caroli
ENSPREG00000016307	cpsf1	100	76.319	ENSMUSG00000034022	Cpsf1	100	76.319	Mus_musculus
ENSPREG00000016307	cpsf1	100	76.455	MGP_PahariEiJ_G0019946	Cpsf1	100	76.387	Mus_pahari
ENSPREG00000016307	cpsf1	100	76.387	MGP_SPRETEiJ_G0020839	Cpsf1	100	76.387	Mus_spretus
ENSPREG00000016307	cpsf1	94	76.984	ENSMPUG00000006419	CPSF1	93	76.984	Mustela_putorius_furo
ENSPREG00000016307	cpsf1	100	76.284	ENSNGAG00000022460	Cpsf1	100	76.081	Nannospalax_galili
ENSPREG00000016307	cpsf1	94	89.535	ENSNBRG00000000813	cpsf1	97	89.341	Neolamprologus_brichardi
ENSPREG00000016307	cpsf1	86	66.216	ENSNLEG00000010633	-	100	75.926	Nomascus_leucogenys
ENSPREG00000016307	cpsf1	83	81.977	ENSMEUG00000014922	CPSF1	85	81.977	Notamacropus_eugenii
ENSPREG00000016307	cpsf1	61	87.368	ENSOPRG00000004693	-	70	87.368	Ochotona_princeps
ENSPREG00000016307	cpsf1	100	76.590	ENSODEG00000013995	CPSF1	100	76.590	Octodon_degus
ENSPREG00000016307	cpsf1	100	88.092	ENSONIG00000007676	cpsf1	100	87.889	Oreochromis_niloticus
ENSPREG00000016307	cpsf1	59	77.857	ENSOANG00000010716	CPSF1	89	77.857	Ornithorhynchus_anatinus
ENSPREG00000016307	cpsf1	100	91.033	ENSORLG00000013544	cpsf1	100	90.625	Oryzias_latipes
ENSPREG00000016307	cpsf1	100	90.965	ENSORLG00020021693	cpsf1	100	90.625	Oryzias_latipes_hni
ENSPREG00000016307	cpsf1	100	90.897	ENSORLG00015009979	cpsf1	100	90.489	Oryzias_latipes_hsok
ENSPREG00000016307	cpsf1	100	90.360	ENSOMEG00000011849	cpsf1	100	89.885	Oryzias_melastigma
ENSPREG00000016307	cpsf1	100	76.606	ENSOGAG00000000315	CPSF1	100	76.538	Otolemur_garnettii
ENSPREG00000016307	cpsf1	100	76.133	ENSPPAG00000019280	CPSF1	100	77.376	Pan_paniscus
ENSPREG00000016307	cpsf1	100	76.133	ENSPTRG00000049288	-	100	77.376	Pan_troglodytes
ENSPREG00000016307	cpsf1	100	74.867	ENSPTRG00000051253	-	100	77.376	Pan_troglodytes
ENSPREG00000016307	cpsf1	97	76.380	ENSPANG00000015005	CPSF1	100	75.926	Papio_anubis
ENSPREG00000016307	cpsf1	100	83.367	ENSPKIG00000002582	cpsf1	100	83.432	Paramormyrops_kingsleyae
ENSPREG00000016307	cpsf1	100	77.043	ENSPCIG00000009035	CPSF1	100	77.110	Phascolarctos_cinereus
ENSPREG00000016307	cpsf1	100	98.640	ENSPFOG00000012870	cpsf1	100	98.640	Poecilia_formosa
ENSPREG00000016307	cpsf1	100	69.527	ENSPPYG00000018973	CPSF1	100	69.257	Pongo_abelii
ENSPREG00000016307	cpsf1	91	82.955	ENSPCAG00000011541	CPSF1	94	82.955	Procavia_capensis
ENSPREG00000016307	cpsf1	100	73.194	ENSPCOG00000020001	CPSF1	100	75.926	Propithecus_coquereli
ENSPREG00000016307	cpsf1	91	85.143	ENSPVAG00000006761	CPSF1	91	85.143	Pteropus_vampyrus
ENSPREG00000016307	cpsf1	100	90.360	ENSPNYG00000004906	cpsf1	100	89.952	Pundamilia_nyererei
ENSPREG00000016307	cpsf1	100	79.215	ENSPNAG00000024395	cpsf1	100	79.215	Pygocentrus_nattereri
ENSPREG00000016307	cpsf1	100	76.355	ENSRNOG00000030705	Cpsf1	100	76.287	Rattus_norvegicus
ENSPREG00000016307	cpsf1	100	76.200	ENSRBIG00000044907	CPSF1	100	76.403	Rhinopithecus_bieti
ENSPREG00000016307	cpsf1	100	76.268	ENSRROG00000044861	CPSF1	100	76.471	Rhinopithecus_roxellana
ENSPREG00000016307	cpsf1	97	76.660	ENSSBOG00000027177	CPSF1	99	76.693	Saimiri_boliviensis_boliviensis
ENSPREG00000016307	cpsf1	100	76.975	ENSSHAG00000006500	CPSF1	100	76.840	Sarcophilus_harrisii
ENSPREG00000016307	cpsf1	100	81.357	ENSSFOG00015004606	cpsf1	100	84.083	Scleropages_formosus
ENSPREG00000016307	cpsf1	100	90.149	ENSSMAG00000020547	cpsf1	100	90.285	Scophthalmus_maximus
ENSPREG00000016307	cpsf1	100	88.382	ENSSDUG00000001100	cpsf1	100	88.179	Seriola_dumerili
ENSPREG00000016307	cpsf1	100	88.313	ENSSLDG00000003619	cpsf1	100	87.976	Seriola_lalandi_dorsalis
ENSPREG00000016307	cpsf1	89	73.391	ENSSARG00000003643	CPSF1	92	72.998	Sorex_araneus
ENSPREG00000016307	cpsf1	96	79.269	ENSSPUG00000014396	CPSF1	100	79.184	Sphenodon_punctatus
ENSPREG00000016307	cpsf1	100	91.094	ENSSPAG00000005349	cpsf1	100	91.094	Stegastes_partitus
ENSPREG00000016307	cpsf1	100	75.692	ENSSSCG00000005906	CPSF1	100	75.625	Sus_scrofa
ENSPREG00000016307	cpsf1	96	88.670	ENSTRUG00000013134	cpsf1	99	88.318	Takifugu_rubripes
ENSPREG00000016307	cpsf1	100	86.734	ENSTNIG00000014027	cpsf1	100	86.465	Tetraodon_nigroviridis
ENSPREG00000016307	cpsf1	78	69.331	ENSTBEG00000001756	CPSF1	91	69.168	Tupaia_belangeri
ENSPREG00000016307	cpsf1	89	81.944	ENSTTRG00000001937	CPSF1	89	81.771	Tursiops_truncatus
ENSPREG00000016307	cpsf1	97	76.918	ENSUAMG00000006476	CPSF1	98	76.709	Ursus_americanus
ENSPREG00000016307	cpsf1	100	95.363	ENSXCOG00000003608	cpsf1	100	95.363	Xiphophorus_couchianus
ENSPREG00000016307	cpsf1	100	94.740	ENSXMAG00000005798	cpsf1	100	94.740	Xiphophorus_maculatus