EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPREG00000016438 (Gene tree)
Gene ID: 103476359
Gene Symbol: smfn
Alias: -
Full Name: RNA exonuclease 2
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Minus strand
Length: 10575 bases
Position: chrLG14:26623041-26633615
Accession: 103476359
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000024328	RNase_T	PF00929.24	3.7e-34	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000024574	-	843	XM_008428638	ENSPREP00000024328	280 (aa)	XP_008426860	UPI0004A3C099

Gene Model

Click here to download ENSPREG00000016438's gene model file

Pathways

Pathway ID	Pathway Name	Source
pret03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000016438's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000016438	smfn	72	77.612	ENSG00000076043	REXO2	99	78.495	Homo_sapiens
ENSPREG00000016438	smfn	72	78.607	ENSAMEG00000013263	REXO2	85	78.607	Ailuropoda_melanoleuca
ENSPREG00000016438	smfn	66	83.871	ENSACIG00000023553	smfn	100	83.871	Amphilophus_citrinellus
ENSPREG00000016438	smfn	99	67.742	ENSAPEG00000012435	smfn	99	67.742	Amphiprion_percula
ENSPREG00000016438	smfn	99	67.754	ENSATEG00000015385	smfn	97	67.754	Anabas_testudineus
ENSPREG00000016438	smfn	69	76.042	ENSAPLG00000005045	REXO2	94	76.042	Anas_platyrhynchos
ENSPREG00000016438	smfn	65	69.945	ENSACAG00000011631	REXO2	86	69.945	Anolis_carolinensis
ENSPREG00000016438	smfn	72	78.109	ENSANAG00000020834	REXO2	85	78.109	Aotus_nancymaae
ENSPREG00000016438	smfn	80	78.761	ENSACLG00000024566	smfn	96	85.326	Astatotilapia_calliptera
ENSPREG00000016438	smfn	72	78.607	ENSBTAG00000005843	REXO2	85	78.607	Bos_taurus
ENSPREG00000016438	smfn	63	49.153	WBGene00007429	C08B6.8	88	55.072	Caenorhabditis_elegans
ENSPREG00000016438	smfn	72	77.114	ENSCJAG00000012434	REXO2	85	77.114	Callithrix_jacchus
ENSPREG00000016438	smfn	72	77.612	ENSCAFG00000013511	REXO2	85	77.612	Canis_familiaris
ENSPREG00000016438	smfn	72	78.607	ENSCAFG00020002513	REXO2	85	78.607	Canis_lupus_dingo
ENSPREG00000016438	smfn	72	78.607	ENSCHIG00000009264	REXO2	85	78.607	Capra_hircus
ENSPREG00000016438	smfn	72	78.109	ENSTSYG00000002237	REXO2	85	78.109	Carlito_syrichta
ENSPREG00000016438	smfn	69	67.876	ENSTSYG00000027948	-	99	67.876	Carlito_syrichta
ENSPREG00000016438	smfn	66	79.032	ENSCAPG00000006093	REXO2	99	79.032	Cavia_aperea
ENSPREG00000016438	smfn	73	76.961	ENSCPOG00000010548	REXO2	86	76.961	Cavia_porcellus
ENSPREG00000016438	smfn	72	78.109	ENSCCAG00000034979	REXO2	85	78.109	Cebus_capucinus
ENSPREG00000016438	smfn	72	77.612	ENSCATG00000015278	REXO2	85	77.612	Cercocebus_atys
ENSPREG00000016438	smfn	73	76.961	ENSCLAG00000011195	REXO2	86	76.961	Chinchilla_lanigera
ENSPREG00000016438	smfn	72	77.612	ENSCSAG00000002754	REXO2	85	77.612	Chlorocebus_sabaeus
ENSPREG00000016438	smfn	71	77.778	ENSCHOG00000000642	-	84	77.778	Choloepus_hoffmanni
ENSPREG00000016438	smfn	51	72.727	ENSCPBG00000009359	REXO2	99	72.727	Chrysemys_picta_bellii
ENSPREG00000016438	smfn	72	53.171	ENSCING00000009858	-	99	53.171	Ciona_intestinalis
ENSPREG00000016438	smfn	72	77.612	ENSCANG00000034756	REXO2	85	77.612	Colobus_angolensis_palliatus
ENSPREG00000016438	smfn	72	77.114	ENSCGRG00001013673	-	98	77.114	Cricetulus_griseus_chok1gshd
ENSPREG00000016438	smfn	72	77.612	ENSCGRG00001019814	-	85	77.612	Cricetulus_griseus_chok1gshd
ENSPREG00000016438	smfn	71	76.768	ENSCGRG00001010922	-	98	75.622	Cricetulus_griseus_chok1gshd
ENSPREG00000016438	smfn	72	77.612	ENSCGRG00000006235	Rexo2	85	77.612	Cricetulus_griseus_crigri
ENSPREG00000016438	smfn	69	82.902	ENSCSEG00000007214	smfn	73	82.587	Cynoglossus_semilaevis
ENSPREG00000016438	smfn	65	89.071	ENSCVAG00000012008	smfn	99	89.071	Cyprinodon_variegatus
ENSPREG00000016438	smfn	81	71.552	ENSDARG00000009806	smfn	88	71.552	Danio_rerio
ENSPREG00000016438	smfn	63	81.714	ENSDNOG00000046533	REXO2	84	81.714	Dasypus_novemcinctus
ENSPREG00000016438	smfn	69	62.176	ENSDORG00000025142	-	87	60.500	Dipodomys_ordii
ENSPREG00000016438	smfn	72	78.109	ENSDORG00000011255	Rexo2	85	78.109	Dipodomys_ordii
ENSPREG00000016438	smfn	67	53.191	FBgn0039115	CG10214	88	53.191	Drosophila_melanogaster
ENSPREG00000016438	smfn	64	76.536	ENSEBUG00000013964	REXO2	61	76.536	Eptatretus_burgeri
ENSPREG00000016438	smfn	72	78.607	ENSEASG00005006674	REXO2	85	78.607	Equus_asinus_asinus
ENSPREG00000016438	smfn	72	78.607	ENSECAG00000005988	REXO2	85	78.607	Equus_caballus
ENSPREG00000016438	smfn	93	66.284	ENSELUG00000020072	smfn	86	66.284	Esox_lucius
ENSPREG00000016438	smfn	72	78.607	ENSFCAG00000018632	REXO2	85	78.607	Felis_catus
ENSPREG00000016438	smfn	67	75.936	ENSFALG00000010044	REXO2	93	75.936	Ficedula_albicollis
ENSPREG00000016438	smfn	73	76.961	ENSFDAG00000011764	REXO2	86	76.961	Fukomys_damarensis
ENSPREG00000016438	smfn	68	80.000	ENSGMOG00000006370	smfn	98	80.000	Gadus_morhua
ENSPREG00000016438	smfn	70	77.436	ENSGALG00000035980	REXO2	84	77.949	Gallus_gallus
ENSPREG00000016438	smfn	99	95.699	ENSGAFG00000015349	smfn	99	95.699	Gambusia_affinis
ENSPREG00000016438	smfn	70	84.615	ENSGACG00000020096	smfn	96	84.615	Gasterosteus_aculeatus
ENSPREG00000016438	smfn	73	74.877	ENSGAGG00000021126	REXO2	88	74.877	Gopherus_agassizii
ENSPREG00000016438	smfn	72	77.612	ENSGGOG00000023267	REXO2	85	77.612	Gorilla_gorilla
ENSPREG00000016438	smfn	80	58.407	ENSHBUG00000020097	REXO2	88	58.407	Haplochromis_burtoni
ENSPREG00000016438	smfn	73	76.471	ENSHGLG00000013556	REXO2	86	76.471	Heterocephalus_glaber_female
ENSPREG00000016438	smfn	73	76.961	ENSHGLG00100005257	REXO2	86	76.961	Heterocephalus_glaber_male
ENSPREG00000016438	smfn	64	77.778	ENSHCOG00000007122	smfn	98	77.778	Hippocampus_comes
ENSPREG00000016438	smfn	71	81.000	ENSIPUG00000020440	rexo2	75	80.296	Ictalurus_punctatus
ENSPREG00000016438	smfn	72	78.109	ENSSTOG00000012465	REXO2	85	78.109	Ictidomys_tridecemlineatus
ENSPREG00000016438	smfn	72	55.446	ENSJJAG00000022605	-	81	55.446	Jaculus_jaculus
ENSPREG00000016438	smfn	72	78.109	ENSJJAG00000013710	-	85	78.109	Jaculus_jaculus
ENSPREG00000016438	smfn	100	68.198	ENSKMAG00000016795	smfn	100	68.905	Kryptolebias_marmoratus
ENSPREG00000016438	smfn	65	82.967	ENSLBEG00000006021	smfn	96	82.967	Labrus_bergylta
ENSPREG00000016438	smfn	71	68.317	ENSLACG00000018623	REXO2	82	68.317	Latimeria_chalumnae
ENSPREG00000016438	smfn	72	79.602	ENSLOCG00000002389	smfn	96	79.602	Lepisosteus_oculatus
ENSPREG00000016438	smfn	71	78.788	ENSLAFG00000012451	REXO2	85	77.612	Loxodonta_africana
ENSPREG00000016438	smfn	72	77.612	ENSMFAG00000041155	REXO2	85	77.612	Macaca_fascicularis
ENSPREG00000016438	smfn	72	77.612	ENSMMUG00000012269	REXO2	85	77.612	Macaca_mulatta
ENSPREG00000016438	smfn	72	77.612	ENSMNEG00000033379	REXO2	85	77.612	Macaca_nemestrina
ENSPREG00000016438	smfn	72	77.612	ENSMLEG00000036571	REXO2	85	77.612	Mandrillus_leucophaeus
ENSPREG00000016438	smfn	100	68.327	ENSMAMG00000021209	smfn	99	68.327	Mastacembelus_armatus
ENSPREG00000016438	smfn	80	78.761	ENSMZEG00005023224	-	86	78.761	Maylandia_zebra
ENSPREG00000016438	smfn	80	78.761	ENSMZEG00005020730	REXO2	86	78.761	Maylandia_zebra
ENSPREG00000016438	smfn	57	74.534	ENSMGAG00000003026	REXO2	99	74.534	Meleagris_gallopavo
ENSPREG00000016438	smfn	72	77.612	ENSMAUG00000014576	Rexo2	85	77.612	Mesocricetus_auratus
ENSPREG00000016438	smfn	72	78.109	ENSMICG00000010094	REXO2	85	78.109	Microcebus_murinus
ENSPREG00000016438	smfn	72	77.612	ENSMOCG00000009016	Rexo2	85	77.612	Microtus_ochrogaster
ENSPREG00000016438	smfn	74	81.250	ENSMMOG00000006430	smfn	77	81.250	Mola_mola
ENSPREG00000016438	smfn	83	69.658	ENSMODG00000013913	REXO2	99	69.658	Monodelphis_domestica
ENSPREG00000016438	smfn	83	76.395	ENSMALG00000018130	smfn	67	76.395	Monopterus_albus
ENSPREG00000016438	smfn	71	77.000	MGP_CAROLIEiJ_G0032166	Rexo2	84	77.000	Mus_caroli
ENSPREG00000016438	smfn	71	77.000	ENSMUSG00000032026	Rexo2	83	78.571	Mus_musculus
ENSPREG00000016438	smfn	71	77.000	MGP_PahariEiJ_G0015034	Rexo2	83	78.571	Mus_pahari
ENSPREG00000016438	smfn	71	77.000	MGP_SPRETEiJ_G0033305	Rexo2	83	78.571	Mus_spretus
ENSPREG00000016438	smfn	72	78.607	ENSMPUG00000003947	REXO2	85	78.607	Mustela_putorius_furo
ENSPREG00000016438	smfn	72	77.612	ENSMLUG00000009030	REXO2	85	77.612	Myotis_lucifugus
ENSPREG00000016438	smfn	71	78.788	ENSNGAG00000008819	Rexo2	98	77.612	Nannospalax_galili
ENSPREG00000016438	smfn	53	51.351	ENSNBRG00000015319	-	92	51.351	Neolamprologus_brichardi
ENSPREG00000016438	smfn	65	84.530	ENSNBRG00000006529	smfn	95	84.530	Neolamprologus_brichardi
ENSPREG00000016438	smfn	72	77.612	ENSNLEG00000029745	REXO2	85	77.612	Nomascus_leucogenys
ENSPREG00000016438	smfn	72	77.114	ENSMEUG00000011558	REXO2	92	77.114	Notamacropus_eugenii
ENSPREG00000016438	smfn	72	54.229	ENSOPRG00000011076	REXO2	85	54.229	Ochotona_princeps
ENSPREG00000016438	smfn	66	79.032	ENSODEG00000009750	-	99	79.032	Octodon_degus
ENSPREG00000016438	smfn	64	64.246	ENSODEG00000016046	-	89	64.246	Octodon_degus
ENSPREG00000016438	smfn	80	79.204	ENSONIG00000001954	smfn	97	79.204	Oreochromis_niloticus
ENSPREG00000016438	smfn	71	77.778	ENSOANG00000001754	REXO2	84	76.617	Ornithorhynchus_anatinus
ENSPREG00000016438	smfn	72	78.109	ENSOCUG00000004274	REXO2	80	78.109	Oryctolagus_cuniculus
ENSPREG00000016438	smfn	96	66.052	ENSORLG00000005119	smfn	85	66.052	Oryzias_latipes
ENSPREG00000016438	smfn	96	66.421	ENSORLG00020010121	smfn	85	66.421	Oryzias_latipes_hni
ENSPREG00000016438	smfn	96	66.790	ENSORLG00015015699	smfn	85	66.790	Oryzias_latipes_hsok
ENSPREG00000016438	smfn	51	75.352	ENSOMEG00000008940	-	99	75.352	Oryzias_melastigma
ENSPREG00000016438	smfn	80	72.646	ENSOMEG00000016878	REXO2	80	72.646	Oryzias_melastigma
ENSPREG00000016438	smfn	72	78.109	ENSOGAG00000016860	REXO2	85	78.109	Otolemur_garnettii
ENSPREG00000016438	smfn	71	79.798	ENSOARG00000001040	REXO2	94	78.607	Ovis_aries
ENSPREG00000016438	smfn	72	77.612	ENSPPAG00000039849	REXO2	85	77.612	Pan_paniscus
ENSPREG00000016438	smfn	72	78.607	ENSPPRG00000007255	REXO2	85	78.607	Panthera_pardus
ENSPREG00000016438	smfn	66	79.570	ENSPTIG00000015578	REXO2	99	79.570	Panthera_tigris_altaica
ENSPREG00000016438	smfn	72	77.612	ENSPTRG00000004306	REXO2	85	77.612	Pan_troglodytes
ENSPREG00000016438	smfn	72	77.612	ENSPANG00000010675	REXO2	85	77.612	Papio_anubis
ENSPREG00000016438	smfn	96	65.568	ENSPKIG00000000911	smfn	96	65.568	Paramormyrops_kingsleyae
ENSPREG00000016438	smfn	71	78.283	ENSPSIG00000005151	REXO2	97	61.481	Pelodiscus_sinensis
ENSPREG00000016438	smfn	65	83.060	ENSPMGG00000007442	smfn	97	83.060	Periophthalmus_magnuspinnatus
ENSPREG00000016438	smfn	72	62.687	ENSPEMG00000001421	Rexo2	84	62.687	Peromyscus_maniculatus_bairdii
ENSPREG00000016438	smfn	71	78.788	ENSPCIG00000011227	REXO2	53	78.788	Phascolarctos_cinereus
ENSPREG00000016438	smfn	100	96.786	ENSPFOG00000017861	smfn	100	96.786	Poecilia_formosa
ENSPREG00000016438	smfn	92	92.996	ENSPLAG00000007327	REXO2	98	92.996	Poecilia_latipinna
ENSPREG00000016438	smfn	100	96.786	ENSPMEG00000017343	smfn	100	96.786	Poecilia_mexicana
ENSPREG00000016438	smfn	72	77.612	ENSPPYG00000003895	REXO2	85	77.612	Pongo_abelii
ENSPREG00000016438	smfn	71	78.283	ENSPCAG00000005237	REXO2	85	77.114	Procavia_capensis
ENSPREG00000016438	smfn	58	81.366	ENSPCOG00000027639	REXO2	83	81.366	Propithecus_coquereli
ENSPREG00000016438	smfn	72	66.995	ENSPVAG00000005295	REXO2	85	66.995	Pteropus_vampyrus
ENSPREG00000016438	smfn	80	78.319	ENSPNYG00000018401	smfn	86	78.319	Pundamilia_nyererei
ENSPREG00000016438	smfn	70	80.513	ENSPNAG00000005290	smfn	74	79.602	Pygocentrus_nattereri
ENSPREG00000016438	smfn	71	77.500	ENSRNOG00000018939	Rexo2	84	77.500	Rattus_norvegicus
ENSPREG00000016438	smfn	72	77.612	ENSRBIG00000037809	REXO2	85	77.612	Rhinopithecus_bieti
ENSPREG00000016438	smfn	72	77.612	ENSRROG00000038928	REXO2	85	77.612	Rhinopithecus_roxellana
ENSPREG00000016438	smfn	66	43.229	YLR059C	REX2	71	43.229	Saccharomyces_cerevisiae
ENSPREG00000016438	smfn	72	78.109	ENSSBOG00000028651	REXO2	85	78.109	Saimiri_boliviensis_boliviensis
ENSPREG00000016438	smfn	83	69.658	ENSSHAG00000008008	REXO2	100	69.658	Sarcophilus_harrisii
ENSPREG00000016438	smfn	65	80.874	ENSSFOG00015022414	smfn	97	80.874	Scleropages_formosus
ENSPREG00000016438	smfn	98	66.547	ENSSMAG00000003168	smfn	98	66.547	Scophthalmus_maximus
ENSPREG00000016438	smfn	100	66.197	ENSSDUG00000015624	smfn	99	66.197	Seriola_dumerili
ENSPREG00000016438	smfn	100	66.549	ENSSLDG00000014005	smfn	99	66.549	Seriola_lalandi_dorsalis
ENSPREG00000016438	smfn	56	72.785	ENSSPUG00000006005	REXO2	85	72.785	Sphenodon_punctatus
ENSPREG00000016438	smfn	65	87.363	ENSSPAG00000001530	smfn	98	87.363	Stegastes_partitus
ENSPREG00000016438	smfn	72	78.607	ENSSSCG00000015056	REXO2	85	78.607	Sus_scrofa
ENSPREG00000016438	smfn	71	75.253	ENSTGUG00000000121	REXO2	86	75.124	Taeniopygia_guttata
ENSPREG00000016438	smfn	78	79.724	ENSTRUG00000021529	smfn	79	79.724	Takifugu_rubripes
ENSPREG00000016438	smfn	68	84.737	ENSTNIG00000008588	smfn	88	84.343	Tetraodon_nigroviridis
ENSPREG00000016438	smfn	72	78.109	ENSTBEG00000017040	REXO2	85	78.109	Tupaia_belangeri
ENSPREG00000016438	smfn	72	78.109	ENSTTRG00000014928	REXO2	85	78.109	Tursiops_truncatus
ENSPREG00000016438	smfn	71	73.500	ENSUAMG00000019096	REXO2	83	81.988	Ursus_americanus
ENSPREG00000016438	smfn	72	78.607	ENSUMAG00000003770	REXO2	85	78.607	Ursus_maritimus
ENSPREG00000016438	smfn	66	61.290	ENSVPAG00000006301	REXO2	99	61.290	Vicugna_pacos
ENSPREG00000016438	smfn	71	79.798	ENSVVUG00000025223	REXO2	85	78.607	Vulpes_vulpes
ENSPREG00000016438	smfn	76	72.897	ENSXETG00000012648	rexo2	95	69.528	Xenopus_tropicalis
ENSPREG00000016438	smfn	68	94.241	ENSXCOG00000018838	smfn	100	91.878	Xiphophorus_couchianus
ENSPREG00000016438	smfn	100	91.786	ENSXMAG00000021125	smfn	88	91.786	Xiphophorus_maculatus