EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPREG00000016718 (Gene tree)
Gene ID: 103464113
Gene Symbol: lsm7
Alias: -
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Plus strand
Length: 747 bases
Position: chrLG4:28246167-28246913
Accession: 103464113
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000024752	LSM	PF01423.22	3.8e-13	1	1
ENSPREP00000024760	LSM	PF01423.22	4.1e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000025008	-	436	XM_008407960	ENSPREP00000024760	130 (aa)	XP_008406182	UPI0004A46FC9
ENSPRET00000025000	-	421	XM_008407961	ENSPREP00000024752	125 (aa)	XP_008406183	UPI0004A2ECD1

Gene Model

Click here to download ENSPREG00000016718's gene model file

Pathways

Pathway ID	Pathway Name	Source
pret03018	RNA degradation	KEGG
pret03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000016718's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000016718	lsm7	65	76.543	ENSG00000130332	LSM7	94	93.939	Homo_sapiens
ENSPREG00000016718	lsm7	63	77.215	ENSAPOG00000015573	lsm7	68	76.250	Acanthochromis_polyacanthus
ENSPREG00000016718	lsm7	65	72.840	ENSAMEG00000005484	LSM7	78	72.840	Ailuropoda_melanoleuca
ENSPREG00000016718	lsm7	64	76.250	ENSACIG00000006498	lsm7	63	76.250	Amphilophus_citrinellus
ENSPREG00000016718	lsm7	63	77.215	ENSAOCG00000001077	lsm7	73	75.309	Amphiprion_ocellaris
ENSPREG00000016718	lsm7	65	77.778	ENSAPEG00000000694	lsm7	78	77.778	Amphiprion_percula
ENSPREG00000016718	lsm7	65	75.309	ENSAPEG00000024447	lsm7	73	75.309	Amphiprion_percula
ENSPREG00000016718	lsm7	65	77.778	ENSATEG00000008557	lsm7	78	77.778	Anabas_testudineus
ENSPREG00000016718	lsm7	65	76.543	ENSANAG00000037196	-	78	76.543	Aotus_nancymaae
ENSPREG00000016718	lsm7	65	76.543	ENSACLG00000021021	lsm7	78	76.543	Astatotilapia_calliptera
ENSPREG00000016718	lsm7	65	76.543	ENSAMXG00000037622	lsm7	78	76.543	Astyanax_mexicanus
ENSPREG00000016718	lsm7	65	76.543	ENSBTAG00000004521	LSM7	78	76.543	Bos_taurus
ENSPREG00000016718	lsm7	71	69.663	ENSCJAG00000039713	-	94	69.663	Callithrix_jacchus
ENSPREG00000016718	lsm7	63	74.684	ENSCAFG00000019409	LSM7	78	72.840	Canis_familiaris
ENSPREG00000016718	lsm7	63	74.684	ENSCAFG00020018168	LSM7	59	72.840	Canis_lupus_dingo
ENSPREG00000016718	lsm7	65	74.074	ENSCHIG00000023663	LSM7	78	74.074	Capra_hircus
ENSPREG00000016718	lsm7	65	76.543	ENSCPOG00000014025	LSM7	78	76.543	Cavia_porcellus
ENSPREG00000016718	lsm7	63	75.949	ENSCCAG00000035456	LSM7	76	75.949	Cebus_capucinus
ENSPREG00000016718	lsm7	65	76.543	ENSCATG00000023543	LSM7	78	76.543	Cercocebus_atys
ENSPREG00000016718	lsm7	65	76.543	ENSCLAG00000011635	LSM7	78	76.543	Chinchilla_lanigera
ENSPREG00000016718	lsm7	65	76.543	ENSCSAG00000011599	LSM7	78	76.543	Chlorocebus_sabaeus
ENSPREG00000016718	lsm7	62	63.636	ENSCING00000022134	-	77	63.636	Ciona_intestinalis
ENSPREG00000016718	lsm7	65	76.543	ENSCANG00000035525	LSM7	78	76.543	Colobus_angolensis_palliatus
ENSPREG00000016718	lsm7	63	69.620	ENSCGRG00001016005	-	81	69.620	Cricetulus_griseus_chok1gshd
ENSPREG00000016718	lsm7	65	76.543	ENSCGRG00001000807	-	78	76.543	Cricetulus_griseus_chok1gshd
ENSPREG00000016718	lsm7	63	69.620	ENSCGRG00000006821	-	81	69.620	Cricetulus_griseus_crigri
ENSPREG00000016718	lsm7	63	75.949	ENSCGRG00000014355	-	78	73.171	Cricetulus_griseus_crigri
ENSPREG00000016718	lsm7	63	77.215	ENSCSEG00000014900	lsm7	70	73.810	Cynoglossus_semilaevis
ENSPREG00000016718	lsm7	66	79.070	ENSCVAG00000021091	lsm7	79	79.070	Cyprinodon_variegatus
ENSPREG00000016718	lsm7	65	76.543	ENSDARG00000058328	lsm7	78	76.543	Danio_rerio
ENSPREG00000016718	lsm7	64	75.000	ENSDORG00000024460	Lsm7	77	75.000	Dipodomys_ordii
ENSPREG00000016718	lsm7	65	58.140	FBgn0261068	LSm7	78	58.140	Drosophila_melanogaster
ENSPREG00000016718	lsm7	63	73.418	ENSETEG00000012788	LSM7	76	73.418	Echinops_telfairi
ENSPREG00000016718	lsm7	65	66.667	ENSEBUG00000016992	lsm7	77	66.667	Eptatretus_burgeri
ENSPREG00000016718	lsm7	65	75.309	ENSECAG00000001440	LSM7	51	75.309	Equus_caballus
ENSPREG00000016718	lsm7	65	75.309	ENSFCAG00000003445	LSM7	78	75.309	Felis_catus
ENSPREG00000016718	lsm7	63	78.481	ENSFALG00000011912	LSM7	77	78.481	Ficedula_albicollis
ENSPREG00000016718	lsm7	59	74.324	ENSFDAG00000007661	LSM7	76	74.324	Fukomys_damarensis
ENSPREG00000016718	lsm7	66	77.907	ENSFHEG00000006349	lsm7	76	77.907	Fundulus_heteroclitus
ENSPREG00000016718	lsm7	65	75.309	ENSGMOG00000013320	lsm7	78	75.309	Gadus_morhua
ENSPREG00000016718	lsm7	65	79.012	ENSGAFG00000013902	lsm7	78	79.012	Gambusia_affinis
ENSPREG00000016718	lsm7	65	75.309	ENSGACG00000010390	lsm7	78	75.309	Gasterosteus_aculeatus
ENSPREG00000016718	lsm7	65	76.543	ENSGGOG00000010172	LSM7	78	76.543	Gorilla_gorilla
ENSPREG00000016718	lsm7	65	76.543	ENSHBUG00000004616	lsm7	78	76.543	Haplochromis_burtoni
ENSPREG00000016718	lsm7	65	76.543	ENSHGLG00000010587	LSM7	78	76.543	Heterocephalus_glaber_female
ENSPREG00000016718	lsm7	65	76.543	ENSHGLG00100000852	LSM7	78	76.543	Heterocephalus_glaber_male
ENSPREG00000016718	lsm7	63	75.949	ENSHCOG00000020252	lsm7	77	75.949	Hippocampus_comes
ENSPREG00000016718	lsm7	65	77.778	ENSIPUG00000024724	lsm7	78	77.778	Ictalurus_punctatus
ENSPREG00000016718	lsm7	63	75.949	ENSSTOG00000028372	LSM7	76	75.949	Ictidomys_tridecemlineatus
ENSPREG00000016718	lsm7	64	75.000	ENSJJAG00000001936	Lsm7	77	75.000	Jaculus_jaculus
ENSPREG00000016718	lsm7	65	79.012	ENSKMAG00000022151	lsm7	78	79.012	Kryptolebias_marmoratus
ENSPREG00000016718	lsm7	65	76.543	ENSLBEG00000005203	lsm7	78	76.543	Labrus_bergylta
ENSPREG00000016718	lsm7	57	73.239	ENSLACG00000015700	LSM7	78	74.074	Latimeria_chalumnae
ENSPREG00000016718	lsm7	63	77.215	ENSLOCG00000004356	lsm7	77	76.250	Lepisosteus_oculatus
ENSPREG00000016718	lsm7	63	75.949	ENSLAFG00000029302	LSM7	78	75.309	Loxodonta_africana
ENSPREG00000016718	lsm7	65	76.543	ENSMFAG00000044572	LSM7	78	76.543	Macaca_fascicularis
ENSPREG00000016718	lsm7	65	76.543	ENSMMUG00000000452	LSM7	78	76.543	Macaca_mulatta
ENSPREG00000016718	lsm7	65	76.543	ENSMNEG00000004393	LSM7	78	76.543	Macaca_nemestrina
ENSPREG00000016718	lsm7	65	76.543	ENSMLEG00000030852	LSM7	78	76.543	Mandrillus_leucophaeus
ENSPREG00000016718	lsm7	65	76.543	ENSMAMG00000005410	lsm7	78	76.543	Mastacembelus_armatus
ENSPREG00000016718	lsm7	65	76.543	ENSMZEG00005028055	lsm7	78	76.543	Maylandia_zebra
ENSPREG00000016718	lsm7	65	77.778	ENSMGAG00000000750	LSM7	69	77.778	Meleagris_gallopavo
ENSPREG00000016718	lsm7	65	76.543	ENSMAUG00000009276	Lsm7	78	76.543	Mesocricetus_auratus
ENSPREG00000016718	lsm7	65	76.543	ENSMICG00000028619	-	78	76.543	Microcebus_murinus
ENSPREG00000016718	lsm7	65	75.309	ENSMICG00000009988	-	78	75.309	Microcebus_murinus
ENSPREG00000016718	lsm7	65	76.543	ENSMOCG00000016925	Lsm7	78	76.543	Microtus_ochrogaster
ENSPREG00000016718	lsm7	65	77.778	ENSMMOG00000019645	lsm7	76	77.778	Mola_mola
ENSPREG00000016718	lsm7	65	76.543	ENSMODG00000004722	LSM7	78	76.543	Monodelphis_domestica
ENSPREG00000016718	lsm7	65	76.543	ENSMALG00000014511	lsm7	62	76.543	Monopterus_albus
ENSPREG00000016718	lsm7	65	75.309	MGP_CAROLIEiJ_G0015607	Lsm7	78	75.309	Mus_caroli
ENSPREG00000016718	lsm7	65	75.309	ENSMUSG00000035215	Lsm7	73	94.737	Mus_musculus
ENSPREG00000016718	lsm7	65	75.309	MGP_PahariEiJ_G0031020	Lsm7	78	75.309	Mus_pahari
ENSPREG00000016718	lsm7	65	75.309	MGP_SPRETEiJ_G0016425	Lsm7	78	75.309	Mus_spretus
ENSPREG00000016718	lsm7	65	74.074	ENSMLUG00000013097	-	78	74.074	Myotis_lucifugus
ENSPREG00000016718	lsm7	65	71.605	ENSMLUG00000024002	-	73	71.605	Myotis_lucifugus
ENSPREG00000016718	lsm7	65	75.309	ENSNGAG00000021637	Lsm7	78	75.309	Nannospalax_galili
ENSPREG00000016718	lsm7	63	75.949	ENSNBRG00000015770	lsm7	69	74.074	Neolamprologus_brichardi
ENSPREG00000016718	lsm7	58	75.000	ENSNBRG00000001237	-	64	74.074	Neolamprologus_brichardi
ENSPREG00000016718	lsm7	65	76.543	ENSNLEG00000002265	LSM7	78	76.543	Nomascus_leucogenys
ENSPREG00000016718	lsm7	66	68.675	ENSODEG00000018769	-	80	68.675	Octodon_degus
ENSPREG00000016718	lsm7	50	61.905	ENSODEG00000008190	-	58	61.905	Octodon_degus
ENSPREG00000016718	lsm7	65	76.543	ENSODEG00000013590	-	78	76.543	Octodon_degus
ENSPREG00000016718	lsm7	65	76.543	ENSONIG00000001801	lsm7	69	76.543	Oreochromis_niloticus
ENSPREG00000016718	lsm7	65	77.778	ENSORLG00000023951	lsm7	78	77.778	Oryzias_latipes
ENSPREG00000016718	lsm7	65	77.778	ENSORLG00020022226	lsm7	78	77.778	Oryzias_latipes_hni
ENSPREG00000016718	lsm7	65	75.309	ENSORLG00015020044	lsm7	75	76.829	Oryzias_latipes_hsok
ENSPREG00000016718	lsm7	65	77.778	ENSOMEG00000012806	lsm7	78	77.778	Oryzias_melastigma
ENSPREG00000016718	lsm7	65	70.370	ENSOGAG00000024373	-	77	70.370	Otolemur_garnettii
ENSPREG00000016718	lsm7	63	75.949	ENSOGAG00000000144	-	77	75.000	Otolemur_garnettii
ENSPREG00000016718	lsm7	65	74.074	ENSOARG00000014013	LSM7	78	74.074	Ovis_aries
ENSPREG00000016718	lsm7	65	76.543	ENSPPAG00000026500	LSM7	78	76.543	Pan_paniscus
ENSPREG00000016718	lsm7	65	75.309	ENSPPRG00000008624	LSM7	78	75.309	Panthera_pardus
ENSPREG00000016718	lsm7	63	74.684	ENSPTIG00000016252	LSM7	76	74.684	Panthera_tigris_altaica
ENSPREG00000016718	lsm7	65	76.543	ENSPTRG00000010233	LSM7	78	76.543	Pan_troglodytes
ENSPREG00000016718	lsm7	65	76.543	ENSPANG00000020668	LSM7	78	76.543	Papio_anubis
ENSPREG00000016718	lsm7	65	79.012	ENSPKIG00000011325	lsm7	78	79.012	Paramormyrops_kingsleyae
ENSPREG00000016718	lsm7	63	77.215	ENSPSIG00000017149	LSM7	68	77.215	Pelodiscus_sinensis
ENSPREG00000016718	lsm7	65	77.778	ENSPMGG00000006498	lsm7	78	77.778	Periophthalmus_magnuspinnatus
ENSPREG00000016718	lsm7	65	76.543	ENSPCIG00000030454	LSM7	78	76.543	Phascolarctos_cinereus
ENSPREG00000016718	lsm7	65	76.543	ENSPFOG00000012467	lsm7	71	76.543	Poecilia_formosa
ENSPREG00000016718	lsm7	66	77.907	ENSPLAG00000000252	lsm7	79	77.907	Poecilia_latipinna
ENSPREG00000016718	lsm7	66	77.907	ENSPMEG00000000587	lsm7	79	77.907	Poecilia_mexicana
ENSPREG00000016718	lsm7	65	76.543	ENSPCOG00000017177	LSM7	78	76.543	Propithecus_coquereli
ENSPREG00000016718	lsm7	65	76.543	ENSPNYG00000006938	lsm7	78	76.543	Pundamilia_nyererei
ENSPREG00000016718	lsm7	65	76.543	ENSPNAG00000010141	lsm7	78	76.543	Pygocentrus_nattereri
ENSPREG00000016718	lsm7	65	76.543	ENSRNOG00000019552	Lsm7	78	76.543	Rattus_norvegicus
ENSPREG00000016718	lsm7	65	76.543	ENSRBIG00000035978	LSM7	78	76.543	Rhinopithecus_bieti
ENSPREG00000016718	lsm7	65	76.543	ENSRROG00000034044	LSM7	78	76.543	Rhinopithecus_roxellana
ENSPREG00000016718	lsm7	65	76.543	ENSSBOG00000034899	LSM7	78	76.543	Saimiri_boliviensis_boliviensis
ENSPREG00000016718	lsm7	65	77.778	ENSSFOG00015006728	lsm7	78	77.778	Scleropages_formosus
ENSPREG00000016718	lsm7	65	75.309	ENSSMAG00000004195	lsm7	72	77.215	Scophthalmus_maximus
ENSPREG00000016718	lsm7	65	77.778	ENSSDUG00000001863	lsm7	61	96.491	Seriola_dumerili
ENSPREG00000016718	lsm7	65	77.778	ENSSLDG00000016339	lsm7	78	77.778	Seriola_lalandi_dorsalis
ENSPREG00000016718	lsm7	65	77.778	ENSSPAG00000015221	lsm7	78	77.778	Stegastes_partitus
ENSPREG00000016718	lsm7	63	75.949	ENSSSCG00000013463	LSM7	76	75.949	Sus_scrofa
ENSPREG00000016718	lsm7	63	78.481	ENSTGUG00000000067	LSM7	77	78.481	Taeniopygia_guttata
ENSPREG00000016718	lsm7	65	77.778	ENSTRUG00000022913	lsm7	78	77.778	Takifugu_rubripes
ENSPREG00000016718	lsm7	65	77.778	ENSTNIG00000015525	lsm7	78	77.778	Tetraodon_nigroviridis
ENSPREG00000016718	lsm7	65	72.840	ENSUAMG00000000912	LSM7	67	72.840	Ursus_americanus
ENSPREG00000016718	lsm7	63	74.684	ENSUMAG00000006556	LSM7	64	72.289	Ursus_maritimus
ENSPREG00000016718	lsm7	63	75.949	ENSXETG00000022166	lsm7	77	75.949	Xenopus_tropicalis
ENSPREG00000016718	lsm7	64	77.500	ENSXCOG00000002572	lsm7	77	77.500	Xiphophorus_couchianus
ENSPREG00000016718	lsm7	65	79.012	ENSXMAG00000018630	lsm7	78	79.012	Xiphophorus_maculatus