EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPREG00000016792 (Gene tree)
Gene ID: 103475485
Gene Symbol: -
Alias: -
Full Name: serine/arginine-rich splicing factor 1A
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Plus strand
Length: 2426 bases
Position: chrLG14:7444554-7446979
Accession: 103475485
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000024878	RRM_1	PF00076.22	2.1e-33	1	2
ENSPREP00000024878	RRM_1	PF00076.22	2.1e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000025127	-	747	XM_008427139	ENSPREP00000024878	248 (aa)	XP_008425361	UPI0004A4DF7B

Gene Model

Click here to download ENSPREG00000016792's gene model file

Pathways

Pathway ID	Pathway Name	Source
pret03040	Spliceosome	KEGG
pret05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000016792's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPREG00000016792	-	67	46.154	ENSPREG00000009639	srsf4	62	37.168
ENSPREG00000016792	-	73	64.835	ENSPREG00000013165	srsf9	68	64.286
ENSPREG00000016792	-	79	86.667	ENSPREG00000009667	srsf1a	79	86.432
ENSPREG00000016792	-	50	41.045	ENSPREG00000001040	srsf6a	86	40.299
ENSPREG00000016792	-	79	41.589	ENSPREG00000018091	srsf5a	66	41.014
ENSPREG00000016792	-	66	49.133	ENSPREG00000010381	srsf5b	55	48.571

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000016792	-	75	92.473	ENSACIG00000002623	-	96	92.473	Amphilophus_citrinellus
ENSPREG00000016792	-	79	86.154	ENSACLG00000005676	-	79	85.930	Astatotilapia_calliptera
ENSPREG00000016792	-	93	92.373	ENSACLG00000021693	-	82	89.372	Astatotilapia_calliptera
ENSPREG00000016792	-	75	62.887	WBGene00004700	rsp-3	75	63.402	Caenorhabditis_elegans
ENSPREG00000016792	-	55	63.309	ENSCING00000000257	-	77	63.571	Ciona_intestinalis
ENSPREG00000016792	-	75	71.892	ENSCING00000007375	-	77	69.841	Ciona_intestinalis
ENSPREG00000016792	-	75	70.811	ENSCSAVG00000006093	-	93	68.783	Ciona_savignyi
ENSPREG00000016792	-	71	55.114	ENSCSAVG00000003567	-	79	60.584	Ciona_savignyi
ENSPREG00000016792	-	75	67.742	FBgn0283477	SF2	73	68.280	Drosophila_melanogaster
ENSPREG00000016792	-	98	71.837	ENSEBUG00000009582	-	85	75.248	Eptatretus_burgeri
ENSPREG00000016792	-	99	97.976	ENSFHEG00000017425	-	100	97.976	Fundulus_heteroclitus
ENSPREG00000016792	-	75	86.559	ENSGMOG00000010606	-	97	86.559	Gadus_morhua
ENSPREG00000016792	-	79	86.667	ENSGAFG00000012721	-	79	86.432	Gambusia_affinis
ENSPREG00000016792	-	100	99.200	ENSGAFG00000000609	-	100	99.200	Gambusia_affinis
ENSPREG00000016792	-	74	86.339	ENSGACG00000011094	-	96	86.339	Gasterosteus_aculeatus
ENSPREG00000016792	-	51	60.630	ENSHBUG00000015600	-	93	60.156	Haplochromis_burtoni
ENSPREG00000016792	-	93	92.766	ENSHBUG00000015576	-	82	89.806	Haplochromis_burtoni
ENSPREG00000016792	-	79	81.500	ENSHCOG00000008016	-	79	81.281	Hippocampus_comes
ENSPREG00000016792	-	98	82.186	ENSMFAG00000034223	-	66	86.000	Macaca_fascicularis
ENSPREG00000016792	-	93	93.162	ENSMZEG00005019071	-	99	91.005	Maylandia_zebra
ENSPREG00000016792	-	79	86.154	ENSMZEG00005007947	-	79	85.930	Maylandia_zebra
ENSPREG00000016792	-	80	89.899	ENSMMOG00000018849	-	81	89.604	Mola_mola
ENSPREG00000016792	-	93	92.373	ENSNBRG00000008134	-	79	92.271	Neolamprologus_brichardi
ENSPREG00000016792	-	79	86.154	ENSNBRG00000019981	-	79	85.930	Neolamprologus_brichardi
ENSPREG00000016792	-	68	64.881	ENSOPRG00000004745	-	96	64.881	Ochotona_princeps
ENSPREG00000016792	-	80	93.137	ENSONIG00000004857	-	82	92.308	Oreochromis_niloticus
ENSPREG00000016792	-	50	91.057	ENSOANG00000007320	-	55	94.382	Ornithorhynchus_anatinus
ENSPREG00000016792	-	71	50.857	ENSOCUG00000026856	-	96	50.847	Oryctolagus_cuniculus
ENSPREG00000016792	-	80	94.444	ENSORLG00000005314	-	92	93.249	Oryzias_latipes
ENSPREG00000016792	-	80	94.444	ENSORLG00015015497	-	92	93.249	Oryzias_latipes_hsok
ENSPREG00000016792	-	80	94.030	ENSOMEG00000017711	-	78	93.659	Oryzias_melastigma
ENSPREG00000016792	-	79	84.848	ENSPLAG00000019553	-	92	83.422	Poecilia_latipinna
ENSPREG00000016792	-	90	70.293	ENSPLAG00000019613	-	71	86.339	Poecilia_latipinna
ENSPREG00000016792	-	79	86.154	ENSPNYG00000017115	-	79	85.930	Pundamilia_nyererei
ENSPREG00000016792	-	93	92.373	ENSPNYG00000020651	-	79	92.271	Pundamilia_nyererei
ENSPREG00000016792	-	84	88.038	ENSSFOG00015004989	-	72	88.000	Scleropages_formosus
ENSPREG00000016792	-	99	80.769	ENSSDUG00000003887	-	81	87.264	Seriola_dumerili
ENSPREG00000016792	-	80	84.848	ENSTRUG00000017058	-	82	85.149	Takifugu_rubripes
ENSPREG00000016792	-	80	81.910	ENSTNIG00000009993	-	82	82.266	Tetraodon_nigroviridis
ENSPREG00000016792	-	79	84.848	ENSXCOG00000009643	-	79	86.154	Xiphophorus_couchianus
ENSPREG00000016792	-	100	99.598	ENSXCOG00000017888	-	99	99.598	Xiphophorus_couchianus
ENSPREG00000016792	-	100	99.598	ENSXMAG00000010797	-	100	99.598	Xiphophorus_maculatus